TCONS_00009034 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009034
Unique NameTCONS_00009034
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2929

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009034 ID=TCONS_00009034|Name=TCONS_00009034|organism=Clytia hemisphaerica|type=transcript|length=2929bp
aaaaaaactcaaaaaaattgtaaagagAAAGTAGTAGAAAAACTCAAAAC
AAAGTGACTTGAAcacaaaaaaatcgaaaaaaacaaaTCATGACACCAAA
TATTCAAATTGCAAGAAAGACTATTATACCAACAACATCAGAGATGAAAA
ATAAGAAACGCCAAAAGCCACCCGGCAACGCCAACTCGACGCCTAACAAC
AACAGACTGTCGAGTAATAACAAAGAAAATACCACACCATACGATCCCAA
TAGTATGGAACATGAAGTCGAGGCTGGTGTTAGTTTAATCTTACGTTTCG
TACAGAACTCTACTTTGAAGAAAACTAATACACACGGTTTGCAATCATTC
AAAGAAAGATTAATCAAAGCCATCATAGAAATGTATACTGGTCATTGGTA
TCCAGACAGACCAATGAAAGGAAGCGCATTCAGATGTTTACGTATTAATC
AAAATGGTAGCGAATCACTGATCGAAAAAACGGCAAAAAATTGCGATGCA
GTTTGGATTGTCGAAAGTCTACCTAAAGAGTTTACTGTGTGGATTGATCC
ATCAGAAGTTTCGTATCGCATTGGTGAAGAGGGGTCTATTTGTGTACATT
ATGCAAGAAAAAACAACACGGATCAGGCTGCCAGAATCGCTAGGGATATC
TATACCatacaaatttgaaaatttagagTCAGTCTACTCGGTTCAAACAA
TCTTACGTCATACAAAAACCAACTTTTGACTGTGAACATTTTTACGAAAC
GAATATTTAGAAGGTTTTAAAGTTAACTGAATGCATTACCAAAAGTAaca
ttgaatttattttttaaaatttttattaaaacgGTCTTGCGTTCTTAACT
GTTTGACCTCGAATGTTCcttccgaaaaaaatttaaaagtttcgaCTCGA
TGAATTGACTATCATAGCTATGAGGTTTATTTTCCTTTCAAAGGTCTGGC
TTCCTTTTTCTAACATTACGATTTTCTCTTAAACCCCTAACGTCTAGGTG
GAGATAAAGAGAGAGGATCACCTTTTTTATTGAGATGGGAAAGATCGATA
GTAAAAGGTTtcacaatatttttttcgagtttttttttcttgagaGATAG
GAGTACGATATAGAGAGAgctattctttttttgtttgtttgaagaTTCAA
ATCCAATTTAGCCCACTTAGCTTTAATGCCTTGTATAGTTATTAATACCA
CCTATTTGACCAACCAATCCCAACCTACGTGAATACACTATTACCTCCTt
taatttaaacaaaaaaagaagtttttatcCGTTTTTTTTAATGTAGTATA
TGCACAGTATTGTATAAGTAGAAAATGTCATCATTCCTATGGAGAGGCTT
GTATTTGATTCTACCATCTCGATGAAAGAGATTTTTAATATTCCCTTGAA
ATTGGATTAAAAACTAGGCAACACTATATGAGTCATTGGTGCATTAAAAA
CAAGTCTCTCAATAGAAAGGGGACGAAGAATTTTACTAAAAATAATTAGC
TTTATTATTTTGGTTGACTAATTCCTTGACCCCTATCTTTACCACAGCCC
TATAAAAGACACAAAATATGCATGGTCATTAAGTTGaaccccccccaaaa
aaaaaaaaatcttaccatCACCATCAGTTATTTTTCACAAGGTAGTCACA
TGTTTTATATGTGATTGAATCCATTGAAAGGTGACTGGGTCTTCTGTCTA
GGTGTCCCCTAATCCATTTTTTGAACTGCCATGCATCTTGTATCTAGAAA
AAGGGTGGTAAACTTGAtgtgttttttataaatatataatacatttttaa
aaaagattgtaAAGAAAGCTAATTgaagatataatttttttagctttgtt
ttttttgagagtacaattttttttaattttcaaatttcaagattttttgg
aTATTGAGgatgatttctttttcaataggAATGTATCATATGAATTGACA
ATCCTTTTACAAGATAATGGTTTCTCCATAGAGAAAGAAGgattaaaata
ataactttcGCCGACAGAAAATGTCTTCCTGAGATTTTGAGTGTCACGAG
TAAGAAGCCGCTATGTTGATCATTCGTTTTTATGTCATCAAAGCAAACAG
ATAGCTTTCTAAAAATAATACTGTTTCCTATATTTAGATACGTTGTTCAT
TTAAacgttttgtttgatttttacatTCATACTTCCAATTTAAGAAATCA
GCCTCAATTTGCCAAAGATTTccctttgaaaattaaaattgtattttttt
atttttgtaatattttcatTATACCATCAAAGGATAAGAGAGACATAGGA
CGAAAAAAGAATGACCTTAGCGAACTCGTTAGAAGATATACCTTacttgc
tgattcagcattttgaGGAATTATTCTTTTGAAATCACATGAAATTTTTA
CCTTTAATCAATCTTTTGGTCTTTTGTCGAGACATCATTTTGTGTAAGTG
TAATTAAAACTGCAAAGAAGAATACTGTAGCATTACAACATTGAATAGAC
TATAAATGCAAGATCAAAGGTCTATAGGCATAACAGAGAAAAGTCTTTCT
AAACCCTCCATCTCTCCCATAAGAataaaaagtcaagaaaaaaatatttg
aaaccttttattttattttttcatataaaaaatatcgatccTTTTCCATT
GTATATacgttagaattttttttcacttataaTTTGTAAATACGATATTA
TTATTATCTCACCCCCTCAATTATTCTGTTGACAATAATTTTGTGAATAG
AACCTTTGAAATGGCAACAGTCAGCGGTAGTTTTACAATTTAATAATAAA
TCTACTACTTCgtatatatttgaaaatttgtacaTAAAGACATTATAGTT
AGATCTTAAAAGATGAGACGGGCTTAAAAGTCAATTAAAACGtgataaaa
ttttaataaattttaaagaGGAAAAAATC
Run BLAST on NCBI

protein sequence of TCONS_00009034-protein

>TCONS_00009034-protein ID=TCONS_00009034-protein|Name=TCONS_00009034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MTPNIQIARKTIIPTTSEMKNKKRQKPPGNANSTPNNNRLSSNNKENTTP
YDPNSMEHEVEAGVSLILRFVQNSTLKKTNTHGLQSFKERLIKAIIEMYT
GHWYPDRPMKGSAFRCLRINQNGSESLIEKTAKNCDAVWIVESLPKEFTV
WIDPSEVSYRIGEEGSICVHYARKNNTDQAARIARDIYTIQI
Run BLAST on NCBI

transcript from alignment at sc0000089:386833..390222-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009034 ID=TCONS_00009034|Name=TCONS_00009034|organism=Clytia hemisphaerica|type=transcript|length=3390bp|location=Sequence derived from alignment at sc0000089:386833..390222- (Clytia hemisphaerica)
AAAAAAACTCAAAAAAATTGTAAAGAGAAAGTAGTAGAAAAACTCAAAAC
AAAGTGACTTGAACACAAAAAAATCGAAAAAAACAAATCATGACACCAAA
TATTCAAATTGCAAGAAAGACTATTATACCAACAACATCAGAGATGAAAA
ATAAGAAACGCCAAAAGCCACCCGGCAACGCCAACTCGACGCCTAACAAC
AACAGACTGTCGAGTAATAACAAAGAAAATACCACACCATACGATCCCAA
TAGTATGGAACATGAAGTCGAGGCTGGTGTTAGTTTAATCTTACGTTTCG
TACAGAACTCTACTTTGAAGAAAACTAATACACACGGTTTGCAATCATTC
AAAGAAAGATTAATCAAAGCCATCATAGAAATGTATACTGGTCATTGGTA
TCCAGACAGACCAATGAAAGGAAGCGCATTCAGATGTTTACGTATTAATC
AAAATGGTAGCGAATCACTGATCGAAAAAACGGCAAAAAATTGCGATGCA
GTTTGGATTGTCGAAAGTCTACCTAAAGAGTTTACTGTGTGGATTGATCC
ATCAGAAGTTTCGTATCGCATTGGTGAAGAGGGGTCTATTTGTGTACATT
ATGCAAGAAAAAACAACACGGTGAAAAGTTAAATTTTGGTTGATTTCTAT
ACTGGAAGCACTTTTTGCTTTGTTCACCCTCTGTTGTTTTTCTACACAAT
TTTTTTTGTCTTCGATTTGTTTGATATTGAGCAAAATGGTTTGGTTTTTT
TGATTGATGCCAGCAACATCATAACTTGATAATCCAAGTTCGACAAAATT
TATTTCATTTTTTTTGGTCGGTGGTGATTTTTTAAAAACATATTTTAAAC
AACTTTTACTGCTCTTTCTACAATAATAATTTTGATTTTCTTGGTCTTTT
TGGTCTCTTATTTTGGTTTTAAAACAGCAAATGTAAATGTAATTTTTTGA
CGTTATCATTTTTGACTGTTTTTAATGCCTCGCTTATCTTGAAGGTCTAC
GTACACTCTGTTCTTATTGATAATGGAGTAAGTGAGATTTTACTAATTAT
TTTGCAAATTTATTCTTGTTTGTTATGCTAGGATCAGGCTGCCAGAATCG
CTAGGGATATCTATACCATACAAATTTGAAAATTTAGAGTCAGTCTACTC
GGTTCAAACAATCTTACGTCATACAAAAACCAACTTTTGACTGTGAACAT
TTTTACGAAACGAATATTTAGAAGGTTTTAAAGTTAACTGAATGCATTAC
CAAAAGTAACATTGAATTTATTTTTTAAAATTTTTATTAAAACGGTCTTG
CGTTCTTAACTGTTTGACCTCGAATGTTCCTTCCGAAAAAAATTTAAAAG
TTTCGACTCGATGAATTGACTATCATAGCTATGAGGTTTATTTTCCTTTC
AAAGGTCTGGCTTCCTTTTTCTAACATTACGATTTTCTCTTAAACCCCTA
ACGTCTAGGTGGAGATAAAGAGAGAGGATCACCTTTTTTATTGAGATGGG
AAAGATCGATAGTAAAAGGTTTCACAATATTTTTTTCGAGTTTTTTTTTC
TTGAGAGATAGGAGTACGATATAGAGAGAGCTATTCTTTTTTTGTTTGTT
TGAAGATTCAAATCCAATTTAGCCCACTTAGCTTTAATGCCTTGTATAGT
TATTAATACCACCTATTTGACCAACCAATCCCAACCTACGTGAATACACT
ATTACCTCCTTTAATTTAAACAAAAAAAGAAGTTTTTATCCGTTTTTTTT
AATGTAGTATATGCACAGTATTGTATAAGTAGAAAATGTCATCATTCCTA
TGGAGAGGCTTGTATTTGATTCTACCATCTCGATGAAAGAGATTTTTAAT
ATTCCCTTGAAATTGGATTAAAAACTAGGCAACACTATATGAGTCATTGG
TGCATTAAAAACAAGTCTCTCAATAGAAAGGGGACGAAGAATTTTACTAA
AAATAATTAGCTTTATTATTTTGGTTGACTAATTCCTTGACCCCTATCTT
TACCACAGCCCTATAAAAGACACAAAATATGCATGGTCATTAAGTTGAAC
CCCCCCCAAAAAAAAAAAAATCTTACCATCACCATCAGTTATTTTTCACA
AGGTAGTCACATGTTTTATATGTGATTGAATCCATTGAAAGGTGACTGGG
TCTTCTGTCTAGGTGTCCCCTAATCCATTTTTTGAACTGCCATGCATCTT
GTATCTAGAAAAAGGGTGGTAAACTTGATGTGTTTTTTATAAATATATAA
TACATTTTTAAAAAAGATTGTAAAGAAAGCTAATTGAAGATATAATTTTT
TTAGCTTTGTTTTTTTTGAGAGTACAATTTTTTTTAATTTTCAAATTTCA
AGATTTTTTGGATATTGAGGATGATTTCTTTTTCAATAGGAATGTATCAT
ATGAATTGACAATCCTTTTACAAGATAATGGTTTCTCCATAGAGAAAGAA
GGATTAAAATAATAACTTTCGCCGACAGAAAATGTCTTCCTGAGATTTTG
AGTGTCACGAGTAAGAAGCCGCTATGTTGATCATTCGTTTTTATGTCATC
AAAGCAAACAGATAGCTTTCTAAAAATAATACTGTTTCCTATATTTAGAT
ACGTTGTTCATTTAAACGTTTTGTTTGATTTTTACATTCATACTTCCAAT
TTAAGAAATCAGCCTCAATTTGCCAAAGATTTCCCTTTGAAAATTAAAAT
TGTATTTTTTTATTTTTGTAATATTTTCATTATACCATCAAAGGATAAGA
GAGACATAGGACGAAAAAAGAATGACCTTAGCGAACTCGTTAGAAGATAT
ACCTTACTTGCTGATTCAGCATTTTGAGGAATTATTCTTTTGAAATCACA
TGAAATTTTTACCTTTAATCAATCTTTTGGTCTTTTGTCGAGACATCATT
TTGTGTAAGTGTAATTAAAACTGCAAAGAAGAATACTGTAGCATTACAAC
ATTGAATAGACTATAAATGCAAGATCAAAGGTCTATAGGCATAACAGAGA
AAAGTCTTTCTAAACCCTCCATCTCTCCCATAAGAATAAAAAGTCAAGAA
AAAAATATTTGAAACCTTTTATTTTATTTTTTCATATAAAAAATATCGAT
CCTTTTCCATTGTATATACGTTAGAATTTTTTTTCACTTATAATTTGTAA
ATACGATATTATTATTATCTCACCCCCTCAATTATTCTGTTGACAATAAT
TTTGTGAATAGAACCTTTGAAATGGCAACAGTCAGCGGTAGTTTTACAAT
TTAATAATAAATCTACTACTTCGTATATATTTGAAAATTTGTACATAAAG
ACATTATAGTTAGATCTTAAAAGATGAGACGGGCTTAAAAGTCAATTAAA
ACGTGATAAAATTTTAATAAATTTTAAAGAGGAAAAAATC

Coding sequence (CDS) from alignment at sc0000089:386833..390222-

>TCONS_00009034 ID=TCONS_00009034|Name=TCONS_00009034|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at sc0000089:386833..390222- (Clytia hemisphaerica)
GATCAGGCTGCCAGAATCGCTAGGGATATCTATACCATACAAATTTGAAT
GACACCAAATATTCAAATTGCAAGAAAGACTATTATACCAACAACATCAG
AGATGAAAAATAAGAAACGCCAAAAGCCACCCGGCAACGCCAACTCGACG
CCTAACAACAACAGACTGTCGAGTAATAACAAAGAAAATACCACACCATA
CGATCCCAATAGTATGGAACATGAAGTCGAGGCTGGTGTTAGTTTAATCT
TACGTTTCGTACAGAACTCTACTTTGAAGAAAACTAATACACACGGTTTG
CAATCATTCAAAGAAAGATTAATCAAAGCCATCATAGAAATGTATACTGG
TCATTGGTATCCAGACAGACCAATGAAAGGAAGCGCATTCAGATGTTTAC
GTATTAATCAAAATGGTAGCGAATCACTGATCGAAAAAACGGCAAAAAAT
TGCGATGCAGTTTGGATTGTCGAAAGTCTACCTAAAGAGTTTACTGTGTG
GATTGATCCATCAGAAGTTTCGTATCGCATTGGTGAAGAGGGGTCTATTT
GTGTACATTATGCAAGAAAAAACAACACGGATCAGGCTGCCAGAATCGCT
AGGGATATCTATACCATACAAATTTGAATGACACCAAATATTCAAATTGC
AAGAAAGACTATTATACCAACAACATCAGAGATGAAAAATAAGAAACGCC
AAAAGCCACCCGGCAACGCCAACTCGACGCCTAACAACAACAGACTGTCG
AGTAATAACAAAGAAAATACCACACCATACGATCCCAATAGTATGGAACA
TGAAGTCGAGGCTGGTGTTAGTTTAATCTTACGTTTCGTACAGAACTCTA
CTTTGAAGAAAACTAATACACACGGTTTGCAATCATTCAAAGAAAGATTA
ATCAAAGCCATCATAGAAATGTATACTGGTCATTGGTATCCAGACAGACC
AATGAAAGGAAGCGCATTCAGATGTTTACGTATTAATCAAAATGGTAGCG
AATCACTGATCGAAAAAACGGCAAAAAATTGCGATGCAGTTTGGATTGTC
GAAAGTCTACCTAAAGAGTTTACTGTGTGGATTGATCCATCAGAAGTTTC
GTATCGCATTGGTGAAGAGGGGTCTATTTGTGTACATTATGCAAGAAAAA
ACAACACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005051XLOC_005051Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009034-proteinTCONS_00009034-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009034-exon-sc0000089-1575043694:389603..390222TCONS_00009034-exon-sc0000089-1575043694:389603..390222Clytia hemisphaericaexon
TCONS_00009034-exon-sc0000089-1575043694:386833..389141TCONS_00009034-exon-sc0000089-1575043694:386833..389141Clytia hemisphaericaexon
TCONS_00009034-exon-sc0000089-1510915933:389603..390222TCONS_00009034-exon-sc0000089-1510915933:389603..390222Clytia hemisphaericaexon
TCONS_00009034-exon-sc0000089-1510915933:386833..389141TCONS_00009034-exon-sc0000089-1510915933:386833..389141Clytia hemisphaericaexon
TCONS_00009034-exon-sc0000089-1491911889:389603..390222TCONS_00009034-exon-sc0000089-1491911889:389603..390222Clytia hemisphaericaexon
TCONS_00009034-exon-sc0000089-1491911889:386833..389141TCONS_00009034-exon-sc0000089-1491911889:386833..389141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:386833..390222 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.117996	0	1.10542	0.181696	0.347434	0.835383	1.10882	2.11206	0.327186	0.82055	3.2064	3.7874	2.10966	0.681275	1.98275	0.455222	4.7896	2.62753	0.967136	1.37076	0.741223	1.28886e-07	0.269477	0	0.977792	10.94	1.58037	1.33926
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002087Anti_prolifrtn
Blast
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BLAST of TCONS_00009034 vs. Swiss-Prot (Human)
Match: BTG1 (Protein BTG1 OS=Homo sapiens GN=BTG1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.662e-23
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = 3 
Query:  252 SMEHEVEAGVSLILRFVQNSTLKKTNTHGLQSFKERLIKAIIEMYTGHWYPDRPMKGSAFRCLRINQNGSESLIEKTAK--NCDAVWIVESLPKEFTVWIDPSEVSYRIGEEGSICVHY 602
            +M  E+ A VS I +F++   L  T+   LQ+F + L + + E Y  HW+P++P KGS +RC+RIN    + LI + A+     +  +   LP E T+W+DP EVSYRIGE+GSICV Y
Sbjct:   10 TMIGEIAAAVSFISKFLRTKGL--TSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSGYRCIRINHK-MDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGSICVLY 125
The following BLAST results are available for this feature:
BLAST of TCONS_00009034 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BTG11.662e-2342.86Protein BTG1 OS=Homo sapiens GN=BTG1 PE=1 SV=1[more]
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