TCONS_00009042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009042
Unique NameTCONS_00009042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length950

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009042 ID=TCONS_00009042|Name=TCONS_00009042|organism=Clytia hemisphaerica|type=transcript|length=950bp
ACAACATTACAAGTGCctgaatttttttagaatttgataATGAACTTGAA
GCCTGCACAGAAGCTCTGCAAGATTTCTTAAGAACTCCATCGAACAATAC
AAGAAAGAAAACTTGGACACAACGAATGGCAGACACCGAGGAACAATGGT
TCGATATTAGAGAAGATTTACTCTCCATTTCAATTAAACGATTCTGCCCC
ATCAGATGTTTTAGATGCTCAGATTCACCACCAGTTGTTCGTTGTGGAGC
TTGTGGCTACTTGTGTGGTGACTGTGATGAGGACGTTCATCAGCATGAAC
CATTACACGATCGCATTGCCTTTATCGAAGGAAAAGTGATACCATTGTCA
CCTTGCCAGGTCATAGAAGAAGGAAATTTATTGACCAAAACTGTGCGTCT
TATCAAATTAGAATACGTAAAATGTTGTAATTGTTTTCAAATACAAAATG
TAACCACCCTAACAAGGATTCCCCAGGATGAAACTGTTGTGGTGATTGGA
TTAAGAGGGAGATTTCTGTTGCATAAATGGTCCTTTTCGTGTCAAAATTG
TACATTCCACCAGCGTGCCCTTAACTTGGAAAGTGGGTTATGGTCTGGTT
ACTGGCCTACATCTCCAAAAACTCTCAACACGGTCATTGAAGAAGATCTT
CTTATGTTTTGGGACTCTTTTCGAAAAAGGATGCCAGGATCTTCTGCGAA
GGCTTTCGTTGATACACTTAATGATATCTCAATCACGAATGGAAGGGTAT
GGCTATTTATATGTCTATTCAAATACTGAGTATGTAATTTGTACATTTTG
TCTCTAAAAGATTTTTAGTGCCTAAGCAATAATAGAATCTAATTGTTATA
GAAATGAGAGTTTGATTGAAAACCAACGTAGTTCTCCGACCATGATCCTG
ACAAATTTCGGTGTTGATTTTTCTTTAGGATTGTTCTATTTACTCGTAAT
Run BLAST on NCBI

protein sequence of TCONS_00009042-protein

>TCONS_00009042-protein ID=TCONS_00009042-protein|Name=TCONS_00009042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MADTEEQWFDIREDLLSISIKRFCPIRCFRCSDSPPVVRCGACGYLCGDC
DEDVHQHEPLHDRIAFIEGKVIPLSPCQVIEEGNLLTKTVRLIKLEYVKC
CNCFQIQNVTTLTRIPQDETVVVIGLRGRFLLHKWSFSCQNCTFHQRALN
LESGLWSGYWPTSPKTLNTVIEEDLLMFWDSFRKRMPGSSAKAFVDTLND
ISITNGRVWLFICLFKY
Run BLAST on NCBI

transcript from alignment at sc0000089:523383..525750-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009042 ID=TCONS_00009042|Name=TCONS_00009042|organism=Clytia hemisphaerica|type=transcript|length=2368bp|location=Sequence derived from alignment at sc0000089:523383..525750- (Clytia hemisphaerica)
ACAACATTACAAGTGCCTGAATTTTTTTAGAATTTGATAATGAACTTGAA
GCCTGCACAGAAGCTCTGCAAGATTTCTTAAGAACTCCATGTAAGTTTGA
AACTTGTGTATATTTTTTAGAAATAACTTATGTATGAATCCATGTTTTCT
TCTAAATTCATTTGACTTGAAAATAAGCGAAGTCGTATTCTAAAATAGAA
ATTACAAGCTTATGTTATGTGAAGAATCTATTATATTTTCATAATAGCGA
ACAATACAAGAAAGAAAACTTGGACACAACGAATGGCAGACACCGAGGAA
CAATGTTTCGATATTAGAGAAGATTTACTCTCCATTTCAATTTAACGATT
CTGCCCCATCAAATGTTTTAGATGCTTAAATTCACCACCAGTTGTTCGTT
GTAGAGCTTGTGGCTACCCGTGTGGTGACTGTGATGAGGATGTTCAACCA
TTACATGATCACATTGCCATTATCGAAGGAAAAGTGATACCATTGCCACC
TTGCCAGGCCATAGAAGAAGGAAATGTATTGACCAAAACTGGTAAAACCA
AAGCATTTATTTGTATTTCTTTTTTTTTTGCGATATCGATAGTCATAAGA
AAACTGAATCTTTTGTTTTGATCTTTTCGTTAAAAATTTAAGCTCTTTAA
TCTTTGAATGACTAGGTTTCAACAGTTTCTTACCTTTACTTTTCAGTGCC
TCTTATCAAATTAGAATACGTGAAATGGTATAATTGTTTTCAAATACAAG
ATGTAACCACCCTAACAAGGATTCCCCAGGATGAAATTGTTGTGGTGATT
GGATTTAGAGGGAGATTTCTGTTGCATAAATGGTCCGTTTCGTGTCAAAA
TTGTACATTCCACCAGCGTGCCCTTAACTTGGAAAGTGGGTTATGGCCTG
GTTACTGGCCTACATCTCCGAAAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGTTATGTGAAGAATCTATTATATTTTCATAATAGCGAA
CAATACAAGAAAGAAAACTTGGACACAACGAATGGCAGACACCGAGGAAC
AATGGTTCGATATTAGAGAAGATTTACTCTCCATTTCAATTAAACGATTC
TGCCCCATCAGATGTTTTAGATGCTCAGATTCACCACCAGTTGTTCGTTG
TGGAGCTTGTGGCTACTTGTGTGGTGACTGTGATGAGGACGTTCATCAGC
ATGAACCATTACACGATCGCATTGCCTTTATCGAAGGAAAAGTGATACCA
TTGTCACCTTGCCAGGTCATAGAAGAAGGAAATTTATTGACCAAAACTGG
TAAAACCCAAGCGTTTATTTGTATTTCTTTTTTTTTTGCGATATCGATAG
TCATTAGTGAAAGCTGAATCTTTTGTTTTGATCTTTTCGTTAGAAATTTT
AAGCTCGTTATTTAACCTTTGAATGACTATGTTTCAACAGTTCCTTACCT
TTACTTTTCAGTGCGTCTTATCAAATTAGAATACGTAAAATGTTGTAATT
GTTTTCAAATACAAAATGTAACCACCCTAACAAGGATTCCCCAGGATGAA
ACTGTTGTGGTGATTGGATTAAGAGGGAGATTTCTGTTGCATAAATGGTC
CTTTTCGTGTCAAAATTGTACATTCCACCAGCGTGCCCTTAACTTGGAAA
GTGGGTTATGGTCTGGTTACTGGCCTACATCTCCAAAAACTCTCAACACG
GTCATTGAAGAAGATCTTCTTATGTTTTGGGACTCTTTTCGAAAAAGGAT
GCCAGGATCTTCTGCGAAGGCTTTCGTTGATACACTTAATGATATCTCAA
TCACGAATGGAAGGGTATGGCTATTTATATGTCTATTCAAATACTGAGTA
TGTAATTTGTACATTTTGTCTCTAAAAGATTTTTAGTGCCTAAGCAATAA
TAGAATCTAATTGTTATAGAAATGAGAGTTTGATTGAAAACCAACGTAGT
TCTCCGACCATGATCCTGACAAATTTCGGTGTTGATTTTTCTTTAGGATT
GTTCTATTTACTCGTAAT

Coding sequence (CDS) from alignment at sc0000089:523383..525750-

>TCONS_00009042 ID=TCONS_00009042|Name=TCONS_00009042|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0000089:523383..525750- (Clytia hemisphaerica)
ATGGCAGACACCGAGGAACAATGGTTCGATATTAGAGAAGATTTACTCTC
CATTTCAATTAAACGATTCTGCCCCATCAGATGTTTTAGATGCTCAGATT
CACCACCAGTTGTTCGTTGTGGAGCTTGTGGCTACTTGTGTGGTGACTGT
GATGAGGACGTTCATCAGCATGAACCATTACACGATCGCATTGCCTTTAT
CGAAGGAAAAGTGATACCATTGTCACCTTGCCAGGTCATAGAAGAAGGAA
ATTTATTGACCAAAACTGTGCGTCTTATCAAATTAGAATACGTAAAATGT
TGTAATTGTTTTCAAATACAAAATGTAACCACCCTAACAAGGATTCCCCA
GGATGAAACTGTTGTGGTGATTGGATTAAGAGGGAGATTTCTGTTGCATA
AATGGTCCTTTTCGTGTCAAAATTGTACATTCCACCAGCGTGCCCTTAAC
TTGGAAAGTGGGTTATGGTCTGGTTACTGGCCTACATCTCCAAAAACTCT
CAACACGGTCATTGAAGAAGATCTTCTTATGTTTTGGGACTCTTTTCGAA
AAAGGATGCCAGGATCTTCTGCGAAGGCTTTCGTTGATACACTTAATGAT
ATCTCAATCACGAATGGAAGGGTATGGCTATTTATATGTCTATTCAAATA
CTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005054XLOC_005054Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009042-proteinTCONS_00009042-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009042-exon-sc0000089-1575043694:525661..525750TCONS_00009042-exon-sc0000089-1575043694:525661..525750Clytia hemisphaericaexon
TCONS_00009042-exon-sc0000089-1575043694:524102..524404TCONS_00009042-exon-sc0000089-1575043694:524102..524404Clytia hemisphaericaexon
TCONS_00009042-exon-sc0000089-1575043694:523383..523939TCONS_00009042-exon-sc0000089-1575043694:523383..523939Clytia hemisphaericaexon
TCONS_00009042-exon-sc0000089-1510915933:525661..525750TCONS_00009042-exon-sc0000089-1510915933:525661..525750Clytia hemisphaericaexon
TCONS_00009042-exon-sc0000089-1510915933:524102..524404TCONS_00009042-exon-sc0000089-1510915933:524102..524404Clytia hemisphaericaexon
TCONS_00009042-exon-sc0000089-1510915933:523383..523939TCONS_00009042-exon-sc0000089-1510915933:523383..523939Clytia hemisphaericaexon
TCONS_00009042-exon-sc0000089-1491911889:525661..525750TCONS_00009042-exon-sc0000089-1491911889:525661..525750Clytia hemisphaericaexon
TCONS_00009042-exon-sc0000089-1491911889:524102..524404TCONS_00009042-exon-sc0000089-1491911889:524102..524404Clytia hemisphaericaexon
TCONS_00009042-exon-sc0000089-1491911889:523383..523939TCONS_00009042-exon-sc0000089-1491911889:523383..523939Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:523383..525750 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1012	1.30729	0.542101	0.583398	3.22832	3.06128	2.27753	3.22711	3.72666	3.69816	4.6382	3.62981	2.45186	2.72283	2.08151	2.4715	1.22203	2.29929	0.254478	1.01191	1.1307	1.4225	0.908743	1.1479	0.616856	1.65159	1.05041	0.840768	0.850257	0.595566
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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