TCONS_00009052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009052
Unique NameTCONS_00009052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009052 ID=TCONS_00009052|Name=TCONS_00009052|organism=Clytia hemisphaerica|type=transcript|length=812bp
cttttcGTGAGTGCGTGATTGCGAAGGTCATGCGACTTTCCCTGGCTAAG
AATTAAAATATCCCcttcaagaaaaacaacaatatgCAAGAACACCCTAC
TTAAAGTGTTTCAATTAAAATATTGGTACAGGCTCATAAAACTGCCTTCT
TCTAATGATCAaaagcaaaattaataaaatacatATAAAAAATACTAATG
GACAAAAATAATTCAAGTGTTGAAAGGTGAAGGTGGCGGTAAATAGACCT
AGGGCGCTTCCAAGGCGCGTAGATGCGAGACGTATTCCTTCTGAAATGGA
TTGAGCTTGAGATGGTACCATTTTAGCCAGGGTGGTGATCAGAAACAGTT
CCTCTGCTGTAATAATAATGCTTAAACAGAGACATGTAACAAGCCATAAA
AAGGCATCCAACCATATTATATGCCAAGTGTCaaacttaaagaaaaagaa
tgctCCAAATATAATCATGATTGATGGAAAAGCAGCATAACCTAAGTAAA
TCATCTTATCAGTTTTGGGTGGTTTGAAAATGCATATGAGGAGAAATAAC
AAGCTTATGGTTCCATTTGTCAGATAAATAAGATTTATATCCAAGTTTGT
CCAATTTAAGATTTCGATGCATGCCAGAGGTACCCATAAGTCATAAACAA
CTACACAGAGCATGGTTGTAAAAGACATCACCAGAATCAAAATTGTATCA
AGGTTGGTAAAAAATTTTCGTAAGACAAACATGGTTTCCATTTCGTTATC
GGTGTTAAATGATGACTTATTCTCGATCATAGGAGTTGACTGCTCTTCTT
GATCTGATTCAA
Run BLAST on NCBI

protein sequence of TCONS_00009052-protein

>TCONS_00009052-protein ID=TCONS_00009052-protein|Name=TCONS_00009052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
ESDQEEQSTPMIENKSSFNTDNEMETMFVLRKFFTNLDTILILVMSFTTM
LCVVVYDLWVPLACIEILNWTNLDINLIYLTNGTISLLFLLICIFKPPKT
DKMIYLGYAAFPSIMIIFGAFFFFKFDTWHIIWLDAFLWLVTCLCLSIII
TAEELFLITTLAKMVPSQAQSISEGIRLASTRLGSALGLFTATFTFQHLN
YFCPLVFFICILLILLLIIRRRQFYEPVPIF
Run BLAST on NCBI

transcript from alignment at sc0000089:131688..132499

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009052 ID=TCONS_00009052|Name=TCONS_00009052|organism=Clytia hemisphaerica|type=transcript|length=812bp|location=Sequence derived from alignment at sc0000089:131688..132499 (Clytia hemisphaerica)
TTGAATCAGATCAAGAAGAGCAGTCAACTCCTATGATCGAGAATAAGTCA
TCATTTAACACCGATAACGAAATGGAAACCATGTTTGTCTTACGAAAATT
TTTTACCAACCTTGATACAATTTTGATTCTGGTGATGTCTTTTACAACCA
TGCTCTGTGTAGTTGTTTATGACTTATGGGTACCTCTGGCATGCATCGAA
ATCTTAAATTGGACAAACTTGGATATAAATCTTATTTATCTGACAAATGG
AACCATAAGCTTGTTATTTCTCCTCATATGCATTTTCAAACCACCCAAAA
CTGATAAGATGATTTACTTAGGTTATGCTGCTTTTCCATCAATCATGATT
ATATTTGGagcattctttttctttaagtttGACACTTGGCATATAATATG
GTTGGATGCCTTTTTATGGCTTGTTACATGTCTCTGTTTAAGCATTATTA
TTACAGCAGAGGAACTGTTTCTGATCACCACCCTGGCTAAAATGGTACCA
TCTCAAGCTCAATCCATTTCAGAAGGAATACGTCTCGCATCTACGCGCCT
TGGAAGCGCCCTAGGTCTATTTACCGCCACCTTCACCTTTCAACACTTGA
ATTATTTTTGTCCATTAGTATTTTTTATatgtattttattaattttgctt
tTGATCATTAGAAGAAGGCAGTTTTATGAGCCTGTACCAATATTTTAATT
GAAACACTTTAAGTAGGGTGTTCTTGcatattgttgtttttcttgaagGG
GATATTTTAATTCTTAGCCAGGGAAAGTCGCATGACCTTCGCAATCACGC
ACTCACgaaaag

Coding sequence (CDS) from alignment at sc0000089:131688..132499

>TCONS_00009052 ID=TCONS_00009052|Name=TCONS_00009052|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000089:131688..132499 (Clytia hemisphaerica)
GAATCAGATCAAGAAGAGCAGTCAACTCCTATGATCGAGAATAAGTCATC
ATTTAACACCGATAACGAAATGGAAACCATGTTTGTCTTACGAAAATTTT
TTACCAACCTTGATACAATTTTGATTCTGGTGATGTCTTTTACAACCATG
CTCTGTGTAGTTGTTTATGACTTATGGGTACCTCTGGCATGCATCGAAAT
CTTAAATTGGACAAACTTGGATATAAATCTTATTTATCTGACAAATGGAA
CCATAAGCTTGTTATTTCTCCTCATATGCATTTTCAAACCACCCAAAACT
GATAAGATGATTTACTTAGGTTATGCTGCTTTTCCATCAATCATGATTAT
ATTTGGagcattctttttctttaagtttGACACTTGGCATATAATATGGT
TGGATGCCTTTTTATGGCTTGTTACATGTCTCTGTTTAAGCATTATTATT
ACAGCAGAGGAACTGTTTCTGATCACCACCCTGGCTAAAATGGTACCATC
TCAAGCTCAATCCATTTCAGAAGGAATACGTCTCGCATCTACGCGCCTTG
GAAGCGCCCTAGGTCTATTTACCGCCACCTTCACCTTTCAACACTTGAAT
TATTTTTGTCCATTAGTATTTTTTATatgtattttattaattttgctttT
GATCATTAGAAGAAGGCAGTTTTATGAGCCTGTACCAATATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005064XLOC_005064Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009052-proteinTCONS_00009052-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009052-exon-sc0000089-1491911889:131688..132499TCONS_00009052-exon-sc0000089-1491911889:131688..132499Clytia hemisphaericaexon
TCONS_00009052-exon-sc0000089-1510915933:131688..132499TCONS_00009052-exon-sc0000089-1510915933:131688..132499Clytia hemisphaericaexon
TCONS_00009052-exon-sc0000089-1575043694:131688..132499TCONS_00009052-exon-sc0000089-1575043694:131688..132499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:131688..132499 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.106892	0.354376	0.182232	0.120583	0.178315	0.102392	0	0.0892728	0.00468995	0.097059	0.0299271	0	0.719265	1.24579	0.550605	0.73191	0.589552	0.381597	0.351482	0.17929	0.304346	0.41932	0	0.276204	0.579717	0	0	0	0	0.140206
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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