TCONS_00009055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009055
Unique NameTCONS_00009055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009055 ID=TCONS_00009055|Name=TCONS_00009055|organism=Clytia hemisphaerica|type=transcript|length=498bp
gctgttggctcCTTGGAAggcattgcaatggtgcatatcatgaattgtcg
TTTGTTTGTGTCTGAAAAAGAAGTTGTTGTAATGCAATTGTTGTTTCCTG
AAAAATCTTTGTTATTACTTATTTCCCTATCCTCATGTATAGCAAcaaaa
gattttggaaaaattggagactcgaatttttcggaaaaataagcATGTGA
TAAACATACTTCGAGTCTAAAATATCTCTAAGCATAACTGAGCTTGTCTC
CCAAAAAACATGAAGGGGGCGACAAAATTCCGTCAATGTTTAATTGAGCG
ATTTAGCGCCCTTCCCTAACTTGTTTTcgtattctcagcctgagcagttc
ctcaacaattccttatttttccaaccattttcagcctcgagttccatATA
AATGTGttccttaaaaaaaatttagagaCATTACAATCAGGCATTACAGG
AACTTGTGGGGGCCACAATAATTATCAAGCAGAAATCAGAGGCTTCAA
Run BLAST on NCBI

transcript from alignment at sc0000089:243795..244292

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009055 ID=TCONS_00009055|Name=TCONS_00009055|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at sc0000089:243795..244292 (Clytia hemisphaerica)
TTGAAGCCTCTGATTTCTGCTTGATAATTATTGTGGCCCCCACAAGTTCC
TGTAATGCCTGATTGTAATGtctctaaattttttttaaggaaCACATTTA
Tatggaactcgaggctgaaaatggttggaaaaataaggaattgttgagga
actgctcaggctgagaatacgAAAACAAGTTAGGGAAGGGCGCTAAATCG
CTCAATTAAACATTGACGGAATTTTGTCGCCCCCTTCATGTTTTTTGGGA
GACAAGCTCAGTTATGCTTAGAGATATTTTAGACTCGAAGTATGTTTATC
ACATgcttatttttccgaaaaattcgagtctccaatttttccaaaatctt
ttgTTGCTATACATGAGGATAGGGAAATAAGTAATAACAAAGATTTTTCA
GGAAACAACAATTGCATTACAACAACTTCTTTTTCAGACACAAACAAAcg
acaattcatgatatgcaccattgcaatgccTTCCAAGgagccaacagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005067XLOC_005067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009055-exon-sc0000089-1491911889:243795..244292TCONS_00009055-exon-sc0000089-1491911889:243795..244292Clytia hemisphaericaexon
TCONS_00009055-exon-sc0000089-1510915933:243795..244292TCONS_00009055-exon-sc0000089-1510915933:243795..244292Clytia hemisphaericaexon
TCONS_00009055-exon-sc0000089-1575043694:243795..244292TCONS_00009055-exon-sc0000089-1575043694:243795..244292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:243795..244292 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.707013	0.239421	0.494812	1.08788	2.15214	1.17737	2.05176	2.06859	0.724135	0.640684	1.49247	0.490546	0.326576	0.763093	0.418244	0.748067	0.623907	0.661197	0.652485	0.273111	0.71215	1.38945	0.703773	0	0.300543	0.352891	1.00997	0.71858	0.545018	0.508001
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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