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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009076 ID=TCONS_00009076|Name=TCONS_00009076|organism=Clytia hemisphaerica|type=transcript|length=2888bp
AGCCTCCATTGTATCTTGTAATACATCGATTTCTTCTTCTGGTACGTCAG
TTTCATCCACAACTTCAATCTGTGTTGGCTCGATaacttttcctttcttt
ttctcACGAGTAAGGCGGGAAAATTGACGAGCCATCTGCTCCTTAGTGAG
GTACTCATCAGGGGTAAACATTTTACAGTTGTTCTCATCTCTACAAGAAC
GCATTTTCAACACAGCAGCTTCTGCTGTTGTTTTCTTTCCGGATCCTGAC
TCTCCTTTCATAAACTCATCGTAAATGAATTGACGTTGCTTCTGGTTGAA
ACGGGTAACTACTCTTTCTGTAAGAGCCCATCCAAACTTATTGAAATCCC
TGTACAACTCGCAATCTTCAATCAAATCTGAGAGGGGGATGGAGACTGAT
GGTTGGTTTTGTGATGTGATGGTGTGGGAAGCTTCATGAAGAAGTTTGGC
ATAGCATAATGAATCTTAACGGAATCGATGCTGGATGTTGTTGCATGATG
ATTATGTATTCCACGATCAATGTGTTCATTCAATTCATCGTTGGTTTGAA
ACGTATCGATACAGCCAATTTGGGGGCAGAAGAACAAACAACACAGCGTT
CTATCAATCCGTTTTTTCGTTGATAGGATAGATGGACGTTCAtgattttg
ggaaaaatcactTGTGAGATACAGGCCAGATGTGAACTCTAAATCAGAGT
ATGATTCAAACCGACCAGCTCCACAGTCAAAGTATTGCCAAAATACCATT
CCAAGTCTATGAAAAAGTACCGAATGAAAGGATTGAATGTCTTTGATTTT
ACTTTGGGTTAAGTGACATTTTGATTTGTCAATCTCAGCAACACacactt
tggtatttttagGACCACCTTGATGGAGAACTCCTTTCTTGATATCATTG
GCAGAAAGACAGTCGTTGCCTGAATGGATGTAGGCGTTTAGATATCGTTT
TGCTACTGCACTGTCACGATCCGCTTGATCTTTGCCCTTTTGGGGCTCAT
TATAGTCATGGCGCAAAAGGTTGATGTCATTCCTTTTACAAATTAGATAT
TCTACTTCTGCCACTGAGTTTCCGGCATAACAGCTGGCATTATCAGATTT
TCTGTAGAGGTTTTTGAGCTCTGGAAAGTCCTCTCTTATTTGCTTGACAA
CAAGCTCAGCAACACATAATGTTTCAACTACATCTTGATCACAGCGAGTT
AGGGTTGTCAGGTATGTGTGTTTTACAAGATCATTCTCTGGTGTTCTTTT
AAGGACGACATCAACATGCATTGACATCCCTTTTTTCCCAAAGTATTCTC
TTTGTCCTTCACGGAAGCTTGAAGGCAAGATTTTTTGTGCCCAATCGCTT
AGCCAAAACCCTGTTTCGTTTGATAAATTTTCCATGGCGAAATGCTTTGC
TTCTTCTTGCTTCACACCTCTGAGGATGTGTTTCATCCAACCAATTACTT
GGTTAGATGCTATTTTCATGTCGTACAACACTTCATCTCTAATCTCACGA
GAATCTATGTTCTGAGCTGACAGTTTCAAAGTTTCTAGAGTTTTGATAAG
CTTGAAACAATCTGGACACATCTTATCATGATCACCATGGTCGTGTTCAG
GTTGAAAGTTGTCATCCTTGGGACAGTAAAGAGCAAATGACATGCAATGA
GTACTAATTTCACTTTCCTCTGTACAATGTAAAGGGTACTTCATCTTGAG
ATACCGTTTAGAATCGTTGAGATCTTTTCTGAGGGCAGACTTTTGTTTTG
AATCAAGTTCTAGCTTGTCTAGTTGGTCAGTCAATATTTGAAAACCTTTT
AAGCCATCTGACGTGTTGTTATCAAGCCCGGCCATTGCACGGCGTTGACC
AGGCTTTATAGCTTTCAAAATCTGCCAAAGAGTACTGTCAGATAGAGGTG
TAAAGTTTATAAGACGGCAATGTTCTTTATATGCAGAGATTGTATGAGTC
TTGGACAACGTAAGAACAGACTTTGGAAGAAGTTGTTTTGAACCATCAGC
AAACTCTAAAGTACTTGTTCCATAGGCAACATCTTGCAGGAGATTACTTT
GAAACAAGAAATTTACGAAATGTTCAGCAGAGTCAATGTTCAATTTGTTC
TTGGTAAAGGGTTTTTCTGACTGGAAGTTTAGTGCCCCATTTGTTTCTGC
CCATTTCCTTGCTTGTTGAACTCGATATTTGGTGCATGAAAACAAGTTCA
TAATATTTTGTATAGAATATTGCTCTTTGGGAATAGCTGACAGTATAAGA
GTTTTCTGTTTTTCGGATTCAGCTTCTTGGTATGCCCTATGTAAGAATTT
CAGGTCTTCAGGTATACAACCTTCTTCAGTCTCTGAGCCAGATGAAGAAA
ATAAGGCTGAAAACTCGTCCACCTGACCTGGAGCAACCATTTCCTTGTAC
TTTTTCTTGCATGATTCGACATAATCCTTGTACTTTCGTTTATGATATCT
TACAGTCGATTCAGATAAATTATNAATCGGTAGAATCAATATCAACAACA
GCTGGCATTGATCGATGGATACGGCATAAGTTTCCAAACATAGGAAACTC
CAAGGGAAACTCTTCATTAATTGACTCGTACATACTTATTGATGCTGGTC
TGAGCCCTGAagcctttttaatttttctgaaGCCTTTGACATCAGGTTTC
TTATGCAATGGATGAAGACAATAATTAGGTGATCTCCATAAGGTTCCCAA
CTGGTATCGATGATATGCAcaaattttggcattttcttccATTGTCACTT
TAGCTCTAGATTCTATGAGCTCTTTTTCATTGACTACATTTGAACCAACG
CGAACAGGTTGATCAATATCAGTAATTTCGAAAGTTCCAGATATATTGTT
CCTCGGAGAAATACCACAATTACCTTGTGATGCTCTAA Run BLAST on NCBI protein sequence of TCONS_00009076-protein >TCONS_00009076-protein ID=TCONS_00009076-protein|Name=TCONS_00009076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=731bp
MKSFPWSFLCLETYAVSIDQCQLLLILILPIXNLSESTVRYHKRKYKDYV
ESCKKKYKEMVAPGQVDEFSALFSSSGSETEEGCIPEDLKFLHRAYQEAE
SEKQKTLILSAIPKEQYSIQNIMNLFSCTKYRVQQARKWAETNGALNFQS
EKPFTKNKLNIDSAEHFVNFLFQSNLLQDVAYGTSTLEFADGSKQLLPKS
VLTLSKTHTISAYKEHCRLINFTPLSDSTLWQILKAIKPGQRRAMAGLDN
NTSDGLKGFQILTDQLDKLELDSKQKSALRKDLNDSKRYLKMKYPLHCTE
ESEISTHCMSFALYCPKDDNFQPEHDHGDHDKMCPDCFKLIKTLETLKLS
AQNIDSREIRDEVLYDMKIASNQVIGWMKHILRGVKQEEAKHFAMENLSN
ETGFWLSDWAQKILPSSFREGQREYFGKKGMSMHVDVVLKRTPENDLVKH
TYLTTLTRCDQDVVETLCVAELVVKQIREDFPELKNLYRKSDNASCYAGN
SVAEVEYLICKRNDINLLRHDYNEPQKGKDQADRDSAVAKRYLNAYIHSG
NDCLSANDIKKGVLHQGGPKNTKVCVAEIDKSKCHLTQSKIKDIQSFHSV
LFHRLGMVFWQYFDCGAGRFESYSDLEFTSGLYLTSDFSQNHERPSILST
KKRIDRTLCCLFFCPQIGCIDTFQTNDELNEHIDRGIHNHHATTSSIDSV
KIHYAMPNFFMKLPTPSHHKTNHQSPSPSQI Run BLAST on NCBI transcript from alignment at sc0000089:678717..681604 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009076 ID=TCONS_00009076|Name=TCONS_00009076|organism=Clytia hemisphaerica|type=transcript|length=2888bp|location=Sequence derived from alignment at sc0000089:678717..681604 (Clytia hemisphaerica)
TTAGAGCATCACAAGGTAATTGTGGTATTTCTCCGAGGAACAATATATCT
GGAACTTTCGAAATTACTGATATTGATCAACCTGTTCGCGTTGGTTCAAA
TGTAGTCAATGAAAAAGAGCTCATAGAATCTAGAGCTAAAGTGACAATgg
aagaaaatgccaaaatttgTGCATATCATCGATACCAGTTGGGAACCTTA
TGGAGATCACCTAATTATTGTCTTCATCCATTGCATAAGAAACCTGATGT
CAAAGGCttcagaaaaattaaaaaggctTCAGGGCTCAGACCAGCATCAA
TAAGTATGTACGAGTCAATTAATGAAGAGTTTCCCTTGGAGTTTCCTATG
TTTGGAAACTTATGCCGTATCCATCGATCAATGCCAGCTGTTGTTGATAT
TGATTCTACCGATTNATAATTTATCTGAATCGACTGTAAGATATCATAAA
CGAAAGTACAAGGATTATGTCGAATCATGCAAGAAAAAGTACAAGGAAAT
GGTTGCTCCAGGTCAGGTGGACGAGTTTTCAGCCTTATTTTCTTCATCTG
GCTCAGAGACTGAAGAAGGTTGTATACCTGAAGACCTGAAATTCTTACAT
AGGGCATACCAAGAAGCTGAATCCGAAAAACAGAAAACTCTTATACTGTC
AGCTATTCCCAAAGAGCAATATTCTATACAAAATATTATGAACTTGTTTT
CATGCACCAAATATCGAGTTCAACAAGCAAGGAAATGGGCAGAAACAAAT
GGGGCACTAAACTTCCAGTCAGAAAAACCCTTTACCAAGAACAAATTGAA
CATTGACTCTGCTGAACATTTCGTAAATTTCTTGTTTCAAAGTAATCTCC
TGCAAGATGTTGCCTATGGAACAAGTACTTTAGAGTTTGCTGATGGTTCA
AAACAACTTCTTCCAAAGTCTGTTCTTACGTTGTCCAAGACTCATACAAT
CTCTGCATATAAAGAACATTGCCGTCTTATAAACTTTACACCTCTATCTG
ACAGTACTCTTTGGCAGATTTTGAAAGCTATAAAGCCTGGTCAACGCCGT
GCAATGGCCGGGCTTGATAACAACACGTCAGATGGCTTAAAAGGTTTTCA
AATATTGACTGACCAACTAGACAAGCTAGAACTTGATTCAAAACAAAAGT
CTGCCCTCAGAAAAGATCTCAACGATTCTAAACGGTATCTCAAGATGAAG
TACCCTTTACATTGTACAGAGGAAAGTGAAATTAGTACTCATTGCATGTC
ATTTGCTCTTTACTGTCCCAAGGATGACAACTTTCAACCTGAACACGACC
ATGGTGATCATGATAAGATGTGTCCAGATTGTTTCAAGCTTATCAAAACT
CTAGAAACTTTGAAACTGTCAGCTCAGAACATAGATTCTCGTGAGATTAG
AGATGAAGTGTTGTACGACATGAAAATAGCATCTAACCAAGTAATTGGTT
GGATGAAACACATCCTCAGAGGTGTGAAGCAAGAAGAAGCAAAGCATTTC
GCCATGGAAAATTTATCAAACGAAACAGGGTTTTGGCTAAGCGATTGGGC
ACAAAAAATCTTGCCTTCAAGCTTCCGTGAAGGACAAAGAGAATACTTTG
GGAAAAAAGGGATGTCAATGCATGTTGATGTCGTCCTTAAAAGAACACCA
GAGAATGATCTTGTAAAACACACATACCTGACAACCCTAACTCGCTGTGA
TCAAGATGTAGTTGAAACATTATGTGTTGCTGAGCTTGTTGTCAAGCAAA
TAAGAGAGGACTTTCCAGAGCTCAAAAACCTCTACAGAAAATCTGATAAT
GCCAGCTGTTATGCCGGAAACTCAGTGGCAGAAGTAGAATATCTAATTTG
TAAAAGGAATGACATCAACCTTTTGCGCCATGACTATAATGAGCCCCAAA
AGGGCAAAGATCAAGCGGATCGTGACAGTGCAGTAGCAAAACGATATCTA
AACGCCTACATCCATTCAGGCAACGACTGTCTTTCTGCCAATGATATCAA
GAAAGGAGTTCTCCATCAAGGTGGTCctaaaaataccaaagtgtGTGTTG
CTGAGATTGACAAATCAAAATGTCACTTAACCCAAAGTAAAATCAAAGAC
ATTCAATCCTTTCATTCGGTACTTTTTCATAGACTTGGAATGGTATTTTG
GCAATACTTTGACTGTGGAGCTGGTCGGTTTGAATCATACTCTGATTTAG
AGTTCACATCTGGCCTGTATCTCACAagtgatttttcccaaaatcaTGAA
CGTCCATCTATCCTATCAACGAAAAAACGGATTGATAGAACGCTGTGTTG
TTTGTTCTTCTGCCCCCAAATTGGCTGTATCGATACGTTTCAAACCAACG
ATGAATTGAATGAACACATTGATCGTGGAATACATAATCATCATGCAACA
ACATCCAGCATCGATTCCGTTAAGATTCATTATGCTATGCCAAACTTCTT
CATGAAGCTTCCCACACCATCACATCACAAAACCAACCATCAGTCTCCAT
CCCCCTCTCAGATTTGATTGAAGATTGCGAGTTGTACAGGGATTTCAATA
AGTTTGGATGGGCTCTTACAGAAAGAGTAGTTACCCGTTTCAACCAGAAG
CAACGTCAATTCATTTACGATGAGTTTATGAAAGGAGAGTCAGGATCCGG
AAAGAAAACAACAGCAGAAGCTGCTGTGTTGAAAATGCGTTCTTGTAGAG
ATGAGAACAACTGTAAAATGTTTACCCCTGATGAGTACCTCACTAAGGAG
CAGATGGCTCGTCAATTTTCCCGCCTTACTCGTgagaaaaagaaaggaaa
agttATCGAGCCAACACAGATTGAAGTTGTGGATGAAACTGACGTACCAG
AAGAAGAAATCGATGTATTACAAGATACAATGGAGGCT Coding sequence (CDS) from alignment at sc0000089:678717..681604 >TCONS_00009076 ID=TCONS_00009076|Name=TCONS_00009076|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000089:678717..681604 (Clytia hemisphaerica)
ATGAAGAGTTTCCCTTGGAGTTTCCTATGTTTGGAAACTTATGCCGTATC
CATCGATCAATGCCAGCTGTTGTTGATATTGATTCTACCGATTNATAATT
TATCTGAATCGACTGTAAGATATCATAAACGAAAGTACAAGGATTATGTC
GAATCATGCAAGAAAAAGTACAAGGAAATGGTTGCTCCAGGTCAGGTGGA
CGAGTTTTCAGCCTTATTTTCTTCATCTGGCTCAGAGACTGAAGAAGGTT
GTATACCTGAAGACCTGAAATTCTTACATAGGGCATACCAAGAAGCTGAA
TCCGAAAAACAGAAAACTCTTATACTGTCAGCTATTCCCAAAGAGCAATA
TTCTATACAAAATATTATGAACTTGTTTTCATGCACCAAATATCGAGTTC
AACAAGCAAGGAAATGGGCAGAAACAAATGGGGCACTAAACTTCCAGTCA
GAAAAACCCTTTACCAAGAACAAATTGAACATTGACTCTGCTGAACATTT
CGTAAATTTCTTGTTTCAAAGTAATCTCCTGCAAGATGTTGCCTATGGAA
CAAGTACTTTAGAGTTTGCTGATGGTTCAAAACAACTTCTTCCAAAGTCT
GTTCTTACGTTGTCCAAGACTCATACAATCTCTGCATATAAAGAACATTG
CCGTCTTATAAACTTTACACCTCTATCTGACAGTACTCTTTGGCAGATTT
TGAAAGCTATAAAGCCTGGTCAACGCCGTGCAATGGCCGGGCTTGATAAC
AACACGTCAGATGGCTTAAAAGGTTTTCAAATATTGACTGACCAACTAGA
CAAGCTAGAACTTGATTCAAAACAAAAGTCTGCCCTCAGAAAAGATCTCA
ACGATTCTAAACGGTATCTCAAGATGAAGTACCCTTTACATTGTACAGAG
GAAAGTGAAATTAGTACTCATTGCATGTCATTTGCTCTTTACTGTCCCAA
GGATGACAACTTTCAACCTGAACACGACCATGGTGATCATGATAAGATGT
GTCCAGATTGTTTCAAGCTTATCAAAACTCTAGAAACTTTGAAACTGTCA
GCTCAGAACATAGATTCTCGTGAGATTAGAGATGAAGTGTTGTACGACAT
GAAAATAGCATCTAACCAAGTAATTGGTTGGATGAAACACATCCTCAGAG
GTGTGAAGCAAGAAGAAGCAAAGCATTTCGCCATGGAAAATTTATCAAAC
GAAACAGGGTTTTGGCTAAGCGATTGGGCACAAAAAATCTTGCCTTCAAG
CTTCCGTGAAGGACAAAGAGAATACTTTGGGAAAAAAGGGATGTCAATGC
ATGTTGATGTCGTCCTTAAAAGAACACCAGAGAATGATCTTGTAAAACAC
ACATACCTGACAACCCTAACTCGCTGTGATCAAGATGTAGTTGAAACATT
ATGTGTTGCTGAGCTTGTTGTCAAGCAAATAAGAGAGGACTTTCCAGAGC
TCAAAAACCTCTACAGAAAATCTGATAATGCCAGCTGTTATGCCGGAAAC
TCAGTGGCAGAAGTAGAATATCTAATTTGTAAAAGGAATGACATCAACCT
TTTGCGCCATGACTATAATGAGCCCCAAAAGGGCAAAGATCAAGCGGATC
GTGACAGTGCAGTAGCAAAACGATATCTAAACGCCTACATCCATTCAGGC
AACGACTGTCTTTCTGCCAATGATATCAAGAAAGGAGTTCTCCATCAAGG
TGGTCctaaaaataccaaagtgtGTGTTGCTGAGATTGACAAATCAAAAT
GTCACTTAACCCAAAGTAAAATCAAAGACATTCAATCCTTTCATTCGGTA
CTTTTTCATAGACTTGGAATGGTATTTTGGCAATACTTTGACTGTGGAGC
TGGTCGGTTTGAATCATACTCTGATTTAGAGTTCACATCTGGCCTGTATC
TCACAagtgatttttcccaaaatcaTGAACGTCCATCTATCCTATCAACG
AAAAAACGGATTGATAGAACGCTGTGTTGTTTGTTCTTCTGCCCCCAAAT
TGGCTGTATCGATACGTTTCAAACCAACGATGAATTGAATGAACACATTG
ATCGTGGAATACATAATCATCATGCAACAACATCCAGCATCGATTCCGTT
AAGATTCATTATGCTATGCCAAACTTCTTCATGAAGCTTCCCACACCATC
ACATCACAAAACCAACCATCAGTCTCCATCCCCCTCTCAGATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009076-exon-sc0000089-1491911889:678717..681604 | TCONS_00009076-exon-sc0000089-1491911889:678717..681604 | Clytia hemisphaerica | exon |
| TCONS_00009076-exon-sc0000089-1510915933:678717..681604 | TCONS_00009076-exon-sc0000089-1510915933:678717..681604 | Clytia hemisphaerica | exon |
| TCONS_00009076-exon-sc0000089-1575043694:678717..681604 | TCONS_00009076-exon-sc0000089-1575043694:678717..681604 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:678717..681604 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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