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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009099 ID=TCONS_00009099|Name=TCONS_00009099|organism=Clytia hemisphaerica|type=transcript|length=2129bp
ATTCCCATACTCTGCAACAAAACTGTTTGCGATCTCCTCATGATCTCCTC
TATCAAAAACGAAGCCTCACTCAAACATacaaaaggggattcctttttcC
TCTCTTATGTAATCCATCCAAAAGATGAAATAGCAATTAAGTCGTTGCAT
TTcttaattcccatatcaacttagtactacttacgccttaaacttaaact
ttcatgtCTGAACACAacctcaacctctgatactcagggtacgagataag
ataagaaagttgaaataattaaaTGGTTTCTTTTCCTAagctgaaaaaaa
tgaaaaaatggacAAGGGCAGACTGAAACTTGCACCGCCTATATGGGTGC
TTCTGTTATTAACTCTATCTCAACAATATACAAATGTTGAGGCTCAAACA
GACATTTATCATGGCTTAGACGATATGGGGAAGCGTTTCGAGATCGGTTG
CAGCCAATTTGCAGTTATGACTATCAAAAAACAAGGTGAAAATTTTGATG
CAACTACATTACCGAAAAGAAATGATATTAAAGACTGGTGTGTCAAGAAA
GTTGATACGTATGGTGTTTATAAAGTTGGTGAATATAGGAAAAGATATAT
GGCTGCTATACCAGGAAAAGGACATTCTGAATTCAAAATGCTAGAGAAAC
GTAGAAAAGCCATCGACAGTTGGATTAATGAGTTTGCTGATCCTGGTAAA
AATGAAGTACAAGTTGATTTGATGTTGTTTACTTATAATGCACCATGTTG
TATGTCTACAGGGAATAATGGAAAAGGAGTTTTAGAAGAGCGAATTAAGA
AGATGAGGCAGAGTGGAAATAAATGGCTAGGTTGTGATACTGGAAGTTGC
TCTAAAAAAATAGACCGTTTCATAGAAGAAATGGGACGCCACTACCCGAA
TATCCGAATGTTCGTATCTTGGTACCGTCCTTATGTTCCAAGAGGAGGAG
GCAAAATTGTCCCGCCCTTGAATCACCCAATATCTTACACCCTATATTTC
GAAACGTTGAGATTGCTATCAAAAAATCCACGAATTCACCTATGGTTTAA
TTTACGAGATGGAAAAACTTCCTTTCAAAGAAAGATGGCAGCTCAAGTCT
GCGTCCGCATGCGCATCCGTCCGGATGATAATATCCGGATGAAACAAGTT
TTTGTAATGGTTAACTATATTACGCAATTTTGCATTCGTAATGGTCTAAA
TCGTCTTCAAACTTGGGaacaacaaaagaacaaaaaccaATACTACACTT
TCACGgataaaaattgtttaaaaaaagcctttaaaaatgGATATCCACTA
GCCACACGAGTacaacattcaatttttgaagGTTGTTTAGGTTTCATCAA
TCAACAAAGTCTTAACACGAATTTGGAGAGAGGAGATATGATGCTTTCGC
CACCACTTAACCCTGACCAAGGAATGAACGCACCACcggaaaatatatat
attttcagcTCCCGTTCTCTAGCTAACTGGGGGAATCAGCAGGATTTTCC
ATTGTAGAACAACTGATGTAAAGGCATAGGAGGAAAACGCCTGAAAAAGT
ACTCAAGCCCCTTACTGTCGAATTTGATCAATACTAGACGCATTAGAGCA
TGACGCTCATGATCTTTGATAATTACTTTGGGATAGACCTTCTCGAAGTT
TCTGATCTTTCCAAAAAAGCAATGCATTGTGAAATTGTTTCggaagtatt
acaatagaaatctcttaggaattcctcgagggaattctattgtaatactc
ccgaaacaatcccacaatgcgtcaactttttagaaaaattaaaatctctG
ATAAGATCTATTGAAAAAAGAGGTCAATCCTTAGGTATGCCatttctcac
agacctggtaggatttttttcagccagtggggataaaaataacggaatgA
AACTGGATGGGGATCGATGTTCTTATactttttatggctggagatttaaa
ttttttggtgtcAAGTCGCAGAAAATCCAGTAGGAATaggaaaatagcat
aatattttgcagtgaggattggttcatttgatttttttcattgggGACAA
AATATGGAAGAATAATtccccaccggggacgatactttggacaatttttc
cagtgggtctgtgagaagggggtgtctta Run BLAST on NCBI protein sequence of TCONS_00009099-protein >TCONS_00009099-protein ID=TCONS_00009099-protein|Name=TCONS_00009099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MDKGRLKLAPPIWVLLLLTLSQQYTNVEAQTDIYHGLDDMGKRFEIGCSQ
FAVMTIKKQGENFDATTLPKRNDIKDWCVKKVDTYGVYKVGEYRKRYMAA
IPGKGHSEFKMLEKRRKAIDSWINEFADPGKNEVQVDLMLFTYNAPCCMS
TGNNGKGVLEERIKKMRQSGNKWLGCDTGSCSKKIDRFIEEMGRHYPNIR
MFVSWYRPYVPRGGGKIVPPLNHPISYTLYFETLRLLSKNPRIHLWFNLR
DGKTSFQRKMAAQVCVRMRIRPDDNIRMKQVFVMVNYITQFCIRNGLNRL
QTWEQQKNKNQYYTFTDKNCLKKAFKNGYPLATRVQHSIFEGCLGFINQQ
SLNTNLERGDMMLSPPLNPDQGMNAPPENIYIFSSRSLANWGNQQDFPL Run BLAST on NCBI transcript from alignment at sc0000090:355857..358758+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009099 ID=TCONS_00009099|Name=TCONS_00009099|organism=Clytia hemisphaerica|type=transcript|length=2902bp|location=Sequence derived from alignment at sc0000090:355857..358758+ (Clytia hemisphaerica)
ATTCCCATACTCTGCAACAAAACTGTTTGCGATCTCCTCATGATCTCCTC
TATCAAAAACGAAGCCTCACTCAAACATacaaaaggggattcctttttcC
TCTCTTATGTAATCCATCCAAAAGATGAAATAGCAATTAAGTCGTTGCAT
TTcttaattcccatatcaacttagtactacttacgccttaaacttaaact
ttcatgtCTGAACACAacctcaacctctgatactcagggtacgagataag
ataagaaagttgaaataattaaaTGGTTTCTTTTCCTAagctgaaaaaaa
tgaaaaaatggacAAGGGCAGACTGAAACTTGCACCGCCTATATGGGTGC
TTCTGTTATTAACTCTATCTCAACAATATACAAATGTTGAGGCTCAAACA
GACATTTATCATGGCTTAGACGATATGGGGAAGCGTTTCGAGATCGGTTG
CAGCCAATTTGCAGTTATGACTATCAAAAAACAAGGTGAAAATTTTGATG
CAACTACATTACCGAAAAGAAATGATATTAAAGACTGGTGTGTCAAGAAA
GTTGATACGTATGGTGTTTATAAAGTTGGTGAATATAGGAAAAGATATAT
GGCTGCTATACCAGGAAAAGGACATTCTGAATTCAAAATGCTAGAGAAAC
GTAGAAAAGCCATCGACAGTTGGATTAATGAGTTTGCTGATCCTGGTAAA
AATGAAGTACAAGTTGATTTGATGTTGTTTACTTATAATGCACCATGTTG
TATGTCTACAGGGAATAATGGAAAAGGAGTTTTAGAAGAGCGAATTAAGA
AGATGAGGCAGAGTGGAAATAAATGGCTAGGTTGTGATACTGGAAGTTGC
TCTAAAAAAATAGACCGTTTCATAGAAGGTGAGATTTATCtatatattta
atattttagcctgataaaaaagatttataataTAGTAGAACCTCCAATTA
GCTGACATCAGTTCGGTGCCGCCATTTCGATTAATTAAGGCAACTTTTTC
GTCTCGTCGTTTCCCGCCATTATTTGTTTCTTCTGATTGAACAAATTACC
GGTACCGAACAGTAAACCGAACTTTATTACTATGGTCTCctcagcaaaga
tggcgcattattaTGCTTCGACATTGTCGTTGcttgagaaagacagaaaa
GCTCTAATTGATATTATTAGATTGACAAGGTTGTAGCTGGATTTGATGAC
ATGCTTGTATAAACTTGACTTTGCAGGCCTTTGTtcgtaaaatttgataa
aaaataaaactatattaaaaagaaaaagttagagaactcttaagaatgat
taaaaaaatttttaacagtGAGCTATCAAGAACACTAAAGTCCATTTGCT
TTAAGTATGTACTGTTTTGCTTGCCAATTTTCAACGAATGCTTCAGTGAG
GATTGAAGAGTCCctgagaacggaccgagtccaAAACATGTCGAGAGAAA
TCAAAATATGATAGCCGCATATTCTTTTTCGCCGTTCAACATATCCTCAC
ATATCATTCACCGTTTAAAAGATAATTTGGAGCATTATAATTTCTGAgaa
aataatccaaaaaaatgttcaaaaataaaaatgaaatgacaAGGAAAACA
AAGATTACTAAAGACTTAAAGTGAATAGACTTTCTTTAATATATATTTTA
GAAATGGGACGCCACTACCCGAATATCCGAATGTTCGTATCTTGGTACCG
TCCTTATGTTCCAAGAGGAGGAGGCAAAATTGTCCCGCCCTTGAATCACC
CAATATCTTACACCCTATATTTCGAAACGTTGAGATTGCTATCAAAAAAT
CCACGAATTCACCTATGGTTTAATTTACGAGATGGAAAAACTTCCTTTCA
AAGAAAGATGGCAGCTCAAGTCTGCGTCCGCATGCGCATCCGTCCGGATG
ATAATATCCGGATGAAACAAGTTTTTGTAATGGTTAACTATATTACGCAA
TTTTGCATTCGTAATGGTCTAAATCGTCTTCAAACTTGGGaacaacaaaa
gaacaaaaaccaATACTACACTTTCACGgataaaaattgtttaaaaaaag
cctttaaaaatgGATATCCACTAGCCACACGAGTacaacattcaattttt
gaagGTTGTTTAGGTTTCATCAATCAACAAAGTCTTAACACGAATTTGGA
GAGAGGAGATATGATGCTTTCGCCACCACTTAACCCTGACCAAGGAATGA
ACGCACCACcggaaaatatatatattttcagcTCCCGTTCTCTAGCTAAC
TGGGGGAATCAGCAGGATTTTCCATTGTAGAACAACTGATGTAAAGGCAT
AGGAGGAAAACGCCTGAAAAAGTACTCAAGCCCCTTACTGTCGAATTTGA
TCAATACTAGACGCATTAGAGCATGACGCTCATGATCTTTGATAATTACT
TTGGGATAGACCTTCTCGAAGTTTCTGATCTTTCCAAAAAAGCAATGCAT
TGTGAAATTGTTTCggaagtattacaatagaaatctcttaggaattcctc
gagggaattctattgtaatactcccgaaacaatcccacaatgcgtcaact
ttttagaaaaattaaaatctctGATAAGATCTATTGAAAAAAGAGGTCAA
TCCTTAGGTATGCCatttctcacagacctggtaggatttttttcagccag
tggggataaaaataacggaatgAAACTGGATGGGGATCGATGTTCTTATa
ctttttatggctggagatttaaattttttggtgtcAAGTCGCAGAAAATC
CAGTAGGAATaggaaaatagcataatattttgcagtgaggattggttcat
ttgatttttttcattgggGACAAAATATGGAAGAATAATtccccaccggg
gacgatactttggacaatttttccagtgggtctgtgagaagggggtgtct
ta Coding sequence (CDS) from alignment at sc0000090:355857..358758+ >TCONS_00009099 ID=TCONS_00009099|Name=TCONS_00009099|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at sc0000090:355857..358758+ (Clytia hemisphaerica)
atggacAAGGGCAGACTGAAACTTGCACCGCCTATATGGGTGCTTCTGTT
ATTAACTCTATCTCAACAATATACAAATGTTGAGGCTCAAACAGACATTT
ATCATGGCTTAGACGATATGGGGAAGCGTTTCGAGATCGGTTGCAGCCAA
TTTGCAGTTATGACTATCAAAAAACAAGGTGAAAATTTTGATGCAACTAC
ATTACCGAAAAGAAATGATATTAAAGACTGGTGTGTCAAGAAAGTTGATA
CGTATGGTGTTTATAAAGTTGGTGAATATAGGAAAAGATATATGGCTGCT
ATACCAGGAAAAGGACATTCTGAATTCAAAATGCTAGAGAAACGTAGAAA
AGCCATCGACAGTTGGATTAATGAGTTTGCTGATCCTGGTAAAAATGAAG
TACAAGTTGATTTGATGTTGTTTACTTATAATGCACCATGTTGTATGTCT
ACAGGGAATAATGGAAAAGGAGTTTTAGAAGAGCGAATTAAGAAGATGAG
GCAGAGTGGAAATAAATGGCTAGGTTGTGATACTGGAAGTTGCTCTAAAA
AAATAGACCGTTTCATAGAAGAAATGGGACGCCACTACCCGAATATCCGA
ATGTTCGTATCTTGGTACCGTCCTTATGTTCCAAGAGGAGGAGGCAAAAT
TGTCCCGCCCTTGAATCACCCAATATCTTACACCCTATATTTCGAAACGT
TGAGATTGCTATCAAAAAATCCACGAATTCACCTATGGTTTAATTTACGA
GATGGAAAAACTTCCTTTCAAAGAAAGATGGCAGCTCAAGTCTGCGTCCG
CATGCGCATCCGTCCGGATGATAATATCCGGATGAAACAAGTTTTTGTAA
TGGTTAACTATATTACGCAATTTTGCATTCGTAATGGTCTAAATCGTCTT
CAAACTTGGGaacaacaaaagaacaaaaaccaATACTACACTTTCACGga
taaaaattgtttaaaaaaagcctttaaaaatgGATATCCACTAGCCACAC
GAGTacaacattcaatttttgaagGTTGTTTAGGTTTCATCAATCAACAA
AGTCTTAACACGAATTTGGAGAGAGGAGATATGATGCTTTCGCCACCACT
TAACCCTGACCAAGGAATGAACGCACCACcggaaaatatatatattttca
gcTCCCGTTCTCTAGCTAACTGGGGGAATCAGCAGGATTTTCCATTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009099-exon-sc0000090-1491911889:355857..356734 | TCONS_00009099-exon-sc0000090-1491911889:355857..356734 | Clytia hemisphaerica | exon |
| TCONS_00009099-exon-sc0000090-1510915933:355857..356734 | TCONS_00009099-exon-sc0000090-1510915933:355857..356734 | Clytia hemisphaerica | exon |
| TCONS_00009099-exon-sc0000090-1575043694:355857..356734 | TCONS_00009099-exon-sc0000090-1575043694:355857..356734 | Clytia hemisphaerica | exon |
| TCONS_00009099-exon-sc0000090-1491911889:357508..358758 | TCONS_00009099-exon-sc0000090-1491911889:357508..358758 | Clytia hemisphaerica | exon |
| TCONS_00009099-exon-sc0000090-1510915933:357508..358758 | TCONS_00009099-exon-sc0000090-1510915933:357508..358758 | Clytia hemisphaerica | exon |
| TCONS_00009099-exon-sc0000090-1575043694:357508..358758 | TCONS_00009099-exon-sc0000090-1575043694:357508..358758 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:355857..358758 + |
Blast
The following BLAST results are available for this feature:
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