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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009120 ID=TCONS_00009120|Name=TCONS_00009120|organism=Clytia hemisphaerica|type=transcript|length=969bp
TTTGGCGTAATGATTATGAATGTCAAGGAAAGTTTCTCAGAAAGGACTTG
ACCAAACATGACCAAGAGAAGATCTATTCGCATTGCGACCAATTGAGAAG
GAAATCAGAGGCTGACAGTCGGAAAATAAGAATCCTGGAGAGTAACAAGA
TGGTCATGGAGCTTCAAGCGTCAAGCCACGAAAGACAAATACAGGAGCTG
GAGGGAGAGGTTTGTAATTTGAAGCAGACTCTTGAAGAGATGAAAAGAGA
GAAATCAAGAAGTACTGAACTATTGTCAAAACAGGAGGGTAATATTCAAC
AACTCAAGAGCCAATGGGAAGGAATGAAACGGATTCTTGAACAGCAACTA
GGAGTGACGTCATTAGATTCAAGCAACAagaaacgaaaaagaaaactaCC
ACCTTCAACAGACAACATTCCATAATAGATCCCAAAATACGTATAAAAAT
TGTCTCCGATCCTTACCCAATATCAAGAATATCTTCGACAATATACAGAG
ATTTAAAAACACCGAAGAgaaatcattttaaaagaaataacaATCTTTTT
CTAGTCCAGAGGCTTATCGTTTCCTGGCCTAGTGGCTGGGTTATCTTTAA
ACAATACAAAATCGAGAACGACGATTTTACATACAAAATCGAGGAAGACA
ATTTTACAACCTGGAAAATGGATTTCTTTGACCTTTAtattatatagttt
tttttggaattggcaCCCgcgaagaagccattgcagtgttaaaaattaac
gtctaacggcgatACATCTTCGAAATTtttgagggaaagtagatctagcg
ctctcgatgcatttacaccgctattgagtagtgccgccattagggtacca
cttttcaagaAACTCCGATATTGCTTGGCCagaattgagaaacttggtcc
agggtatataaaggtcagtgatttcTCTTACCTGTATTAATCATGAATTG
ATTATAAACCAGGGGGAGG Run BLAST on NCBI transcript from alignment at sc0000090:616383..618414+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009120 ID=TCONS_00009120|Name=TCONS_00009120|organism=Clytia hemisphaerica|type=transcript|length=2032bp|location=Sequence derived from alignment at sc0000090:616383..618414+ (Clytia hemisphaerica)
TTTGGCGTAATGATTATGAATGTCAAGGAAAGGTAAGTTACTTTAAAAGT
CTTATGGGCAGAAAAGTACTAGTTCTTATTTTAGTTATAAATATGCACTC
CGTCTGGCTGTAATTCATggttaaaatattttaattcttcgccacggcat
gacgtcagaactggggtacaacagaacacttactaaagagaaattatttg
ttttcagtaaacataatcttttagtgagttaaaccatagtgtttgtttta
cccttgaaattattaaatcttattggttgaaaaagatgtcacatgacttt
ccgtggcaaagaataAGAAAGACCATTTCCctgcaaaattaaaaaacaaa
cccACAAATTATTATCAAGTGCTGTATCTTATTTCTAGAATATAGAATTT
TAACACTGAGTTTTTAGATTGACGATTGAGATGCTTATCCAAAAGCTGAA
AGATGTTCCAACAAGGCTTGAAATATAACCTAGAACCCACTAAACCCCTT
CAATAacgaaatatttaaaatatagGGAACATTCTAAAATCGtgacttta
aattctgaaaaacgttaaaatactcaaaaatctCATTATATTTCTACCTT
AATTGTAGTTCTAATTTCCCGTTCTTTCGATGATTAACTGgagaaaattt
gataaaattagaGTCAATAAATGAaagagatattgagcttccgaaaagcg
caaaaactggacaaaacagctgtttctggctgaaaaacaatgaaaaacac
tgtttttaaggattaatatctcgagttaggtatagaaatcacctatactc
gcaatatatcactaatcctaaatttttgagagctttccaaaaatatacaa
caggtcccCGTTTTCTCAACctaaaattttcgttaatttttcaccctatg
atttttgagaccgtcgtatttgtccgaaaatcacaccaaagtgtccgaaa
aaaaattggcacccatgttattttgattcccctatcccttagctttccaa
aaatgtataacaaatgctttgactaaaaaaatcgagcgacctcaaaaaaa
cgaacaaatttccccctactaaatgGCTAACAACATTCAATTTAGTTTCT
CAGAAAGGACTTGACCAAACATGACCAAGAGAAGATCTATTCGCATTGCG
ACCAATTGAGAAGGAAATCAGAGGCTGACAGTCGGAAAATAAGAATCCTG
GAGAGTAACAAGATGGTCATGGAGCTTCAAGCGTCAAGCCACGAAAGACA
AATACAGGAGCTGGAGGGAGAGGTTTGTAATTTGAAGCAGACTCTTGAAG
AGATGAAAAGAGAGAAATCAAGAAGTACTGAACTATTGTCAAAACAGGAG
GGTAATATTCAACAACTCAAGAGCCAATGGGAAGGAATGAAACGGATTCT
TGAACAGCAACTAGGAGTGACGTCATTAGATTCAAGCAACAagaaacgaa
aaagaaaactaCCACCTTCAACAGACAACATTCCATAATAGATCCCAAAA
TACGTATAAAAATTGTCTCCGATCCTTACCCAATATCAAGAATATCTTCG
ACAATATACAGAGATTTAAAAACACCGAAGAgaaatcattttaaaagaaa
taacaATCTTTTTCTAGTCCAGAGGCTTATCGTTTCCTGGCCTAGTGGCT
GGGTTATCTTTAAACAATACAAAATCGAGAACGACGATTTTACATACAAA
ATCGAGGAAGACAATTTTACAACCTGGAAAATGGATTTCTTTGACCTTTA
tattatatagttttttttggaattggcaCCCgcgaagaagccattgcagt
gttaaaaattaacgtctaacggcgatACATCTTCGAAATTtttgagggaa
agtagatctagcgctctcgatgcatttacaccgctattgagtagtgccgc
cattagggtaccacttttcaagaAACTCCGATATTGCTTGGCCagaattg
agaaacttggtccagggtatataaaggtcagtgatttcTCTTACCTGTAT
TAATCATGAATTGATTATAAACCAGGGGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009120-exon-sc0000090-1491911889:616383..616414 | TCONS_00009120-exon-sc0000090-1491911889:616383..616414 | Clytia hemisphaerica | exon |
| TCONS_00009120-exon-sc0000090-1510915933:616383..616414 | TCONS_00009120-exon-sc0000090-1510915933:616383..616414 | Clytia hemisphaerica | exon |
| TCONS_00009120-exon-sc0000090-1575043694:616383..616414 | TCONS_00009120-exon-sc0000090-1575043694:616383..616414 | Clytia hemisphaerica | exon |
| TCONS_00009120-exon-sc0000090-1491911889:617478..618414 | TCONS_00009120-exon-sc0000090-1491911889:617478..618414 | Clytia hemisphaerica | exon |
| TCONS_00009120-exon-sc0000090-1510915933:617478..618414 | TCONS_00009120-exon-sc0000090-1510915933:617478..618414 | Clytia hemisphaerica | exon |
| TCONS_00009120-exon-sc0000090-1575043694:617478..618414 | TCONS_00009120-exon-sc0000090-1575043694:617478..618414 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:616383..618414 + |
Blast
The following BLAST results are available for this feature:
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