|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009123 ID=TCONS_00009123|Name=TCONS_00009123|organism=Clytia hemisphaerica|type=transcript|length=2233bp
GTGTAGAATGACtattaaacattttttatctttttgtaaatcctgtaaaa
aattacaatattaTTGTGCTCTATTATTATAACAATGGTatcaaaaaatt
tgtaaaatatatttacaagaaaatatATCCAACGGGACGAAAAATGCTTC
TGCAGCTAGTAAAATAAAGATGGCGAGTCTAAAAATTCAACCTCAGAATC
AGGAAATATTTATCTGACTGATTAAAGGTAAAGGCTTTTACTTTTTAATC
TTTTACCCAATACGATTAACCAAGGCAAAAGAACTTTTGAATTTAACACC
ATTTTATTGGTTGTAATTGACGTATTCCCAAAAATAGGCCAATAAAATGG
CTTCATTAGCGTACAGAGCTAATAAGTCAATGCGCGTGGATATTGAAGTA
AaccaattttgaaaatctttatgAAATCAGATTAAATGCGAATTTTGTCC
CACGCCTCGTCATAATAAGTATAAATGCGTaaaatataatcaaaataaGT
GAATTGACAGAAATGAGGAACTgatggaaaataagaaaaactaCGAAATA
CCACTGCGAAAGGATTATTCATCGATTGACTTTGTTCGAGGGAAAGAAAA
ACCAGATACTACAATCTTACTTATAATATCGACAggaaaaaaaatccaga
aaactCATCGTAAATTTCCAGGTGATTTTCAGGTGATAAAGACTTTAAAT
TATTCGAAGACGACCGTTGTGTCTAAATCTTTAGTTTTAACCTCCCTAGA
ATGACTTTTTAAAGGACAATATGAGTGCGCCAAGACTCACGAAgtgtaat
taaaaaataaaactaatttttctattttcgttGTGGTATCTCATTTTAAT
GAAGAATTATATTAATAAATTTAACGTGAAACAAACTGTATAAAAAATTC
TCAACAATATTACCTAAAATTCTAAAGTGAAGATCtagtttttagtcaaa
aagaTGTCCTTCAAGAAAATATGTGAAAAGTTAAATTTCTTTATGCTATG
AATCTTTACCTCTTTATACCGTCACTTAAACATTATTGACTAAGGGATCG
TGAGGGATCGGAATTTAATAAGGGCcggtttaaaaatggaaaatattgaG
CTTTGGCGTAATAAGGTCCGGCTTAAAAGGGGCCGGTGCTAAATTAGGGC
CGACGTAAAAAGGACCGATAAGGTATAACGGCATCAATCATGACAAAGTT
TTATTCATTTGGACGTTTAAGAAAGGCTTTTTAGATAAATTCATGACTAA
AATTGACTTCATTTCACAGAAGCTTGAACGCACAACTAACCGCACAactc
tttcaaaataaattctagAATACTCCTatagaccaaaatatttttaaaag
ttacaAGAACTAAGCTATTCAACACACCAAGACACCAGCAGTTCACGAAG
AATTCAATCTCATTCGAAACTTAATCGATAGAAGCGTAACTATGTCTGAA
AAGAGAAAGTagacaaaacttaaaaacgaaTTGAACATGAGAAGTGTTAG
TGTGTTGGTTGGTTAGTTCTTGCGGTGTAtatcttaaaggaagaaatttt
ggcggaaagatcATTTAGTAACTTTCTGTCGTTCTTTATTATTCTGAAGT
CCAACTTCTTGTTGGTGCGAGTTTGATCCTTTCTCCCCCTCAAAAAAGAC
ATTCTCGGGCATCCGCCAAATTATGTTCCCGCCAAAagttcttcctttaa
ggtagtatAATATGTACATGTGGGAGAAATGGGGAAACTTCTATAACACG
GACCATCGGACCAATTGTGTTCGATCTATGACAGGTCTCCATTTACTNAA
AATCCAAAAAAAGCGAAACCCTTCATTTTTGTCAAATACATCTCTATGCT
AATAAAACCTAGCCGTAGAACGGAACCCCCATTTAAACTGAGAGAGAAGG
GTCCATTCTAATCAAGGAAACTAACCGAGAAATATGAATATAATCCTAGA
AATGTGATTGTGAAAAATGTGGAAACTTCTATAACAGGGGCAATCGGACC
AATTGTGTTCGATCTATGACAGGTCTCTTATAATACTTGCATTCTAATTA
ATACGTTCGTACTTGGACTTTGCACTGTTTGACTTCCACAACCTCCTAAT
GATCCACACGAAGATGGCCAATAAGAATCCAGCAACAAACGGACCAGCAA
GTCCTAGAGTGATAACGGTGACGGCGAAATCCGAAAGACTGATATCAACC
GGCGGTTTCCCCGAACCAATTAAACCAGACCtg Run BLAST on NCBI transcript from alignment at sc0000090:661520..663811+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009123 ID=TCONS_00009123|Name=TCONS_00009123|organism=Clytia hemisphaerica|type=transcript|length=2292bp|location=Sequence derived from alignment at sc0000090:661520..663811+ (Clytia hemisphaerica)
GTGTAGAATGACtattaaacattttttatctttttgtaaatcctgtaaaa
aattacaatattaTTGTGCTCTATTATTATAACAATGGTatcaaaaaatt
tgtaaaatatatttacaagaaaatatATCCAACGGGACGAAAAATGCTTC
TGCAGCTAGTAAAATAAAGATGGCGAGTCTAAAAATTCAACCTCAGAATC
AGGAAATATTTATCTGACTGATTAAAGGTAAAGGCTTTTACTTTTTAATC
TTTTACCCAATACGATTAACCAAGGCAAAAGAACTTTTGAATTTAACACC
ATTTTATTGGTTGTAATTGACGTATTCCCAAAAATAGGCCAATAAAATGG
CTTCATTAGCGTACAGAGCTAATAAGTCAATGCGCGTGGATATTGAAGTA
AaccaattttgaaaatctttatgAAATCAGATTAAATGCGAATTTTGTCC
CACGCCTCGTCATAATAAGTATAAATGCGTaaaatataatcaaaataaGT
GAATTGACAGAAATGAGGAACTgatggaaaataagaaaaactaCGAAATA
CCACTGCGAAAGGATTATTCATCGATTGACTTTGTTCGAGGGAAAGAAAA
ACCAGATACTACAATCTTACTTATAATATCGACAggaaaaaaaatccaga
aaactCATCGTAAATTTCCAGGTGATTTAACGGCGACAAAGACTTTGAAT
TATTAAAAGACGACCGTTGTGTCTANTCAGGTGATTTTCAGGTGATAAAG
ACTTTAAATTATTCGAAGACGACCGTTGTGTCTAAATCTTTAGTTTTAAC
CTCCCTAGAATGACTTTTTAAAGGACAATATGAGTGCGCCAAGACTCACG
AAgtgtaattaaaaaataaaactaatttttctattttcgttGTGGTATCT
CATTTTAATGAAGAATTATATTAATAAATTTAACGTGAAACAAACTGTAT
AAAAAATTCTCAACAATATTACCTAAAATTCTAAAGTGAAGATCtagttt
ttagtcaaaaagaTGTCCTTCAAGAAAATATGTGAAAAGTTAAATTTCTT
TATGCTATGAATCTTTACCTCTTTATACCGTCACTTAAACATTATTGACT
AAGGGATCGTGAGGGATCGGAATTTAATAAGGGCcggtttaaaaatggaa
aatattgaGCTTTGGCGTAATAAGGTCCGGCTTAAAAGGGGCCGGTGCTA
AATTAGGGCCGACGTAAAAAGGACCGATAAGGTATAACGGCATCAATCAT
GACAAAGTTTTATTCATTTGGACGTTTAAGAAAGGCTTTTTAGATAAATT
CATGACTAAAATTGACTTCATTTCACAGAAGCTTGAACGCACAACTAACC
GCACAactctttcaaaataaattctagAATACTCCTatagaccaaaatat
ttttaaaagttacaAGAACTAAGCTATTCAACACACCAAGACACCAGCAG
TTCACGAAGAATTCAATCTCATTCGAAACTTAATCGATAGAAGCGTAACT
ATGTCTGAAAAGAGAAAGTagacaaaacttaaaaacgaaTTGAACATGAG
AAGTGTTAGTGTGTTGGTTGGTTAGTTCTTGCGGTGTAtatcttaaagga
agaaattttggcggaaagatcATTTAGTAACTTTCTGTCGTTCTTTATTA
TTCTGAAGTCCAACTTCTTGTTGGTGCGAGTTTGATCCTTTCTCCCCCTC
AAAAAAGACATTCTCGGGCATCCGCCAAATTATGTTCCCGCCAAAagttc
ttcctttaaggtagtatAATATGTACATGTGGGAGAAATGGGGAAACTTC
TATAACACGGACCATCGGACCAATTGTGTTCGATCTATGACAGGTCTCCA
TTTACTNAAAATCCAAAAAAAGCGAAACCCTTCATTTTTGTCAAATACAT
CTCTATGCTAATAAAACCTAGCCGTAGAACGGAACCCCCATTTAAACTGA
GAGAGAAGGGTCCATTCTAATCAAGGAAACTAACCGAGAAATATGAATAT
AATCCTAGAAATGTGATTGTGAAAAATGTGGAAACTTCTATAACAGGGGC
AATCGGACCAATTGTGTTCGATCTATGACAGGTCTCTTATAATACTTGCA
TTCTAATTAATACGTTCGTACTTGGACTTTGCACTGTTTGACTTCCACAA
CCTCCTAATGATCCACACGAAGATGGCCAATAAGAATCCAGCAACAAACG
GACCAGCAAGTCCTAGAGTGATAACGGTGACGGCGAAATCCGAAAGACTG
ATATCAACCGGCGGTTTCCCCGAACCAATTAAACCAGACCtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009123-exon-sc0000090-1491911889:661520..662190 | TCONS_00009123-exon-sc0000090-1491911889:661520..662190 | Clytia hemisphaerica | exon |
| TCONS_00009123-exon-sc0000090-1510915933:661520..662190 | TCONS_00009123-exon-sc0000090-1510915933:661520..662190 | Clytia hemisphaerica | exon |
| TCONS_00009123-exon-sc0000090-1575043694:661520..662190 | TCONS_00009123-exon-sc0000090-1575043694:661520..662190 | Clytia hemisphaerica | exon |
| TCONS_00009123-exon-sc0000090-1491911889:662250..663811 | TCONS_00009123-exon-sc0000090-1491911889:662250..663811 | Clytia hemisphaerica | exon |
| TCONS_00009123-exon-sc0000090-1510915933:662250..663811 | TCONS_00009123-exon-sc0000090-1510915933:662250..663811 | Clytia hemisphaerica | exon |
| TCONS_00009123-exon-sc0000090-1575043694:662250..663811 | TCONS_00009123-exon-sc0000090-1575043694:662250..663811 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:661520..663811 + |
Blast
The following BLAST results are available for this feature:
|
