TCONS_00009140 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009140
Unique NameTCONS_00009140
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009140 ID=TCONS_00009140|Name=TCONS_00009140|organism=Clytia hemisphaerica|type=transcript|length=3350bp
TGTGATTATTACGTCATTATTCattgacctttttcttttgttcacaTTAC
CAATGAATTaatttaaattacaaaaaaagaaataaactaCTAATGTTTGT
TGACAATTTGTTTAAAGGAAGCAACCAATATCAAAATAGCGCTTTTTGTA
AGAATTTCATCTTGAAAGCTGTCATTTGTAATTGATGCCATGAACTATCA
ATGAATCAATCAGAGGTCTATTACTATAGTACTACAGTAGTAGGGTTAGT
AAAAAGTCCTAAGAAGAGACGGAAAAAGGTCATCCCTCGGTAACATGAAA
AATCGACTTTTCATTGATAgtctaaaaatcacaaaaagaaTCTCTATTAA
ATGACCCATGCGATTAAAATGGAAATTCCGAAAACTTTAAAACATTAGTA
TCAAATTCCATTCCTCATCATCGAAACGTATCATGAAACAGATAAGCTTT
ATAATATTGTTGCGGATTAACTTTCGAAAACAAAATGTCAACAATACACT
TTTTATCAATACGAAATACTCGAAAAAAAAATACCTTCTAACCTAGCAAC
catacttaaaatgtaatataaGGTAAAGAGACAAGttgtataaaaaataa
taaaaactgaaaaaaagtgAACGGAAAATCAAGGCTAAAATCcttcattt
tgttttaaaaaatacgTGGAGAATGGGCTCAAATAATGTTAGCCATTGGT
AGGATACGGTTTCATCATATGTTATACCCATCAAAACAATGTAATACAAA
AAACTAACCCAAACTTCTCAGAAAATGTTCTAAGGAGCAACCGCCGATAG
ACCTTAtaggagtttttgatttttcaaaaaaagcgatgcattgtgggatt
gtttcgggagtattacaataaaAACTCTTAGGAGGGAATTTTTATTGTAa
aactcccgaaacaatcccacaatgcatctaAGATCTAAGATcttcgcttt
tttagaaaaatcaaaaactacaATAAGATCTATTACAATACATTGCACTC
TTATACACGGTAGAGTGGCTAAACTTTCACTCTCCTGGGAAACATTCCTT
ATTGCCACTTCGTAAACAACGGAAAATGATAAACACTCTGGGTAGGTACA
AAAAACTTTAACTTGCTAGGCGCCGTTAATTACCAGGCCATTGCGTGTTG
TCTACGCATTTGTACGcatcttaaaaaattgttttttgccGGTATACCCA
GAAAAAGCAGCGGAAAGATCTTGGAAATGCAACAGGAATGTTTTGCCGGG
AATGAGAAAGGTTAGACATCCTACGGTAACAGTACAAAGATACCACAAAA
GTAAATCCCTAGAGAaaagttttgagaaagaaaTTATGCTAACAATctac
ttttaaaaataaatattaagacaaaaaaatgccGCCACCGCGATGACAGC
ACAATTTACTCCTTACAAATTACCAGCATGCATATTGAATGGTGCACCAT
TGAATGGTAATATCCACATATATGGTGGAGCAAAAAATGTTATGTTTTTT
GGTATAGTTGAATATtctaattgaaaaaattttatgagcgttgttaaaaa
ataatgctaagaatTTGCAATACAAGCTTTTCTAGTAAAGCATCCCTAAA
GTTTTCGTCGAGCAAAGCTGAAGTACttattgaaggaaaatgaacatCAA
AGTGACTCGACTGCAAAGCACTTTGAACAATCTTCTGATGGATTTCTACT
TCTGATGGATTTCTAGCTTGTtttaaaaaataactttcataTTTTGAGAG
TGAGtaaaattatcataaattaATTCAACTAATAATTGCCACCGCTTTGT
TGCTGAGAGTTAATACCGGCTTTAACAGCTTCTGCCGCAGCAGCTTGTAC
ATTCCTGTTGCTTGCGACACCGGTGGCAAATTCACTTTGTGCTTTCTGTA
AGGAAGCTCCACTGGATCGGTAGAAATGATGGATCTGAGAAAAAAGAGCa
ataatatttcattatttGGAAAGAATGTAATGTATGTATGGAAAAATCGT
TAACTCGTGTGAAAACGGATTTTCTAGGGTGAGATTCAGTTCGTTTTTCA
CACAGGTGTGAAAGGGTAATTAAACACCCTGTGTGTTTACACCTTGTTGA
ATCAATTATCAAACTAAAAGCTCAATCTGCAATCGCAATCTGACTTAATT
CTTCTTAAATTTGAGGTGTTTTAGTCTGATACTCAATTCAATATGGTGTA
AACACTAAGGGTGTTATTTACGATTTCACACCCGTGTGAAAAACGAACCG
AATCCCACCATGGGAAATCAGTTTTCACATGAGTGTTATAATATGTTATA
GTCTGAGACGAGTTTCCTTTGAAAGGAACAAATGTGCTAAGACGGGAGTT
TTTCCTACAGTTGTGAACGACTCCAACGCTACTTTTTCTCACCTCTCTCT
GTACATAGAACTAATGATTGGCCCGCTCAGCTTGAAAGTCGTATAAAACA
CTCCCCATAATTCGAATCCCTTTCTTATCCGaagaagatcgaattagaga
gaaccAACTgcagtttcttctttttctttttctctgttGAGGTTTTGTTC
GTAAAGAAAAGAATTGATAACGAAATCGTCCTCCTTAGATTCGTCCAATT
TCCTTGTTTCCTACATACACgaccccagccgggtcataccaaagattctc
aaaatgttaCTTGATGCctttctgcttgatgctcagcagtTAAAataagg
atcaagggtaagtggagcaatccagggagaaagagtggcgccctccccta
ccttcgggtaaatGGCTATCGAAAGTCGGGTCGTCTCCGACTGCGaacgc
agacttacttacttttatgaaaaactatataagaacacaatgtTTTGATG
Accaaaaaatcaagaacaatttaaatttaaggatattttaaggctttgaa
gaCTCTATAACACTCTTAGGCAATTGCACAAAATTACTCACAAAACGATG
AAATTAAgcacattttaagaacatttcatagaatcaaaaagctaagaaca
tacTTAGgcttaaaagtttttgatttctattatacagtggtcaaagcagt
ttttttctgtgagGCGGAAAATTCCTTGATAGAGATATTTTGAACAGTGA
CACCCGCAGGCCCCACCATCGTTGGAGCCGAGGGccagaaaattttcaga
ttttttaccctctagattggctggAGAGGcactaaaatttgttaattaaa
acaactccgaatgttcttaaaatgcctATCATACAGCGAAAATATATATC
TATCTCAAAtagattgaaaaataaaaatatatgaacGTCATACTAcacaa
taaattgaagttgagataagaattgtttgatacttaaagtttcacgcaac
Run BLAST on NCBI

transcript from alignment at sc0000090:332549..335931-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009140 ID=TCONS_00009140|Name=TCONS_00009140|organism=Clytia hemisphaerica|type=transcript|length=3383bp|location=Sequence derived from alignment at sc0000090:332549..335931- (Clytia hemisphaerica)
TGTGATTATTACGTCATTATTCATTGACCTTTTTCTTTTGTTCACATTAC
CAATGAATTAATTTAAATTACAAAAAAAGAAATAAACTACTAATGTTTGT
TGACAATTTGTTTAAAGGAAGCAACCAATATCAAAATAGCGCTTTTTGTA
AGAATTTCATCTTGAAAGCTGTCATTTGTAATTGATGCCATGAACTATCA
ATGAATCAATCAGAGGTCTATTACTATAGTACTACAGTAGTAGGGTTAGT
AAAAAGTCCTAAGAAGAGACGGAAAAAGGTCATCCCTCGGTAACATGAAA
AATCGACTTTTCATTGATAGTCTAAAAATCACAAAAAGAATCTCTATTAA
ATGACCCATGCGATTAAAATGGAAATTCCGAAAACTTTAAAACATTAGTA
TCAAATTCCATTCCTCATCATCGAAACGTATCATGAAACAGATAAGCTTT
ATAATATTGTTGCGGATTAACTTTCGAAAACAAAATGTCAACAATACACT
TTTTATCAATACGAAATACTCGAAAAAAAAATACCTTCTAACCTAGCAAC
CATACTTAAAATGTAATATAAGGTAAAGAGACAAGTTGTATAAAAAATAA
TAAAAACTGAAAAAAAGTGAACGGAAAATCAAGGCTAAAATCCTTCATTT
TGTTTTAAAAAATACGTGGAGAATGGGCTCAAATAATGTATCGAGTATGA
ATTATGCAAGAACATCTTAGGTTAGCCATTGGTAGGATACGGTTTCATCA
TATGTTATACCCATCAAAACAATGTAATACAAAAAACTAACCCAAACTTC
TCAGAAAATGTTCTAAGGAGCAACCGCCGATAGACCTTATAGGAGTTTTT
GATTTTTCAAAAAAAGCGATGCATTGTGGGATTGTTTCGGGAGTATTACA
ATAAAAACTCTTAGGAGGGAATTTTTATTGTAAAACTCCCGAAACAATCC
CACAATGCATCTAAGATCTAAGATCTTCGCTTTTTTAGAAAAATCAAAAA
CTACAATAAGATCTATTACAATACATTGCACTCTTATACACGGTAGAGTG
GCTAAACTTTCACTCTCCTGGGAAACATTCCTTATTGCCACTTCGTAAAC
AACGGAAAATGATAAACACTCTGGGTAGGTACAAAAAACTTTAACTTGCT
AGGCGCCGTTAATTACCAGGCCATTGCGTGTTGTCTACGCATTTGTACGC
ATCTTAAAAAATTGTTTTTTGCCGGTATACCCAGAAAAAGCAGCGGAAAG
ATCTTGGAAATGCAACAGGAATGTTTTGCCGGGAATGAGAAAGGTTAGAC
ATCCTACGGTAACAGTACAAAGATACCACAAAAGTAAATCCCTAGAGAAA
AGTTTTGAGAAAGAAATTATGCTAACAATCTACTTTTAAAAATAAATATT
AAGACAAAAAAATGCCGCCACCGCGATGACAGCACAATTTACTCCTTACA
AATTACCAGCATGCATATTGAATGGTGCACCATTGAATGGTAATATCCAC
ATATATGGTGGAGCAAAAAATGTTATGTTTTTTGGTATAGTTGAATATTC
TAATTGAAAAAATTTTATGAGCGTTGTTAAAAAATAATGCTAAGAATTTG
CAATACAAGCTTTTCTAGTAAAGCATCCCTAAAGTTTTCGTCGAGCAAAG
CTGAAGTACTTATTGAAGGAAAATGAACATCAAAGTGACTCGACTGCAAA
GCACTTTGAACAATCTTCTGATGGATTTCTACTTCTGATGGATTTCTAGC
TTGTTTTAAAAAATAACTTTCATATTTTGAGAGTGAGTAAAATTATCATA
AATTAATTCAACTAATAATTGCCACCGCTTTGTTGCTGAGAGTTAATACC
GGCTTTAACAGCTTCTGCCGCAGCAGCTTGTACATTCCTGTTGCTTGCGA
CACCGGTGGCAAATTCACTTTGTGCTTTCTGTAAGGAAGCTCCACTGGAT
CGGTAGAAATGATGGATCTGAGAAAAAAGAGCAATAATATTTCATTATTT
GGAAAGAATGTAATGTATGTATGGAAAAATCGTTAACTCGTGTGAAAACG
GATTTTCTAGGGTGAGATTCAGTTCGTTTTTCACACAGGTGTGAAAGGGT
AATTAAACACCCTGTGTGTTTACACCTTGTTGAATCAATTATCAAACTAA
AAGCTCAATCTGCAATCGCAATCTGACTTAATTCTTCTTAAATTTGAGGT
GTTTTAGTCTGATACTCAATTCAATATGGTGTAAACACTAAGGGTGTTAT
TTACGATTTCACACCCGTGTGAAAAACGAACCGAATCCCACCATGGGAAA
TCAGTTTTCACATGAGTGTTATAATATGTTATAGTCTGAGACGAGTTTCC
TTTGAAAGGAACAAATGTGCTAAGACGGGAGTTTTTCCTACAGTTGTGAA
CGACTCCAACGCTACTTTTTCTCACCTCTCTCTGTACATAGAACTAATGA
TTGGCCCGCTCAGCTTGAAAGTCGTATAAAACACTCCCCATAATTCGAAT
CCCTTTCTTATCCGAAGAAGATCGAATTAGAGAGAACCAACTGCAGTTTC
TTCTTTTTCTTTTTCTCTGTTGAGGTTTTGTTCGTAAAGAAAAGAATTGA
TAACGAAATCGTCCTCCTTAGATTCGTCCAATTTCCTTGTTTCCTACATA
CACGACCCCAGCCGGGTCATACCAAAGATTCTCAAAATGTTACTTGATGC
CTTTCTGCTTGATGCTCAGCAGTTAAAATAAGGATCAAGGGTAAGTGGAG
CAATCCAGGGAGAAAGAGTGGCGCCCTCCCCTACCTTCGGGTAAATGGCT
ATCGAAAGTCGGGTCGTCTCCGACTGCGAACGCAGACTTACTTACTTTTA
TGAAAAACTATATAAGAACACAATGTTTTGATGACCAAAAAATCAAGAAC
AATTTAAATTTAAGGATATTTTAAGGCTTTGAAGACTCTATAACACTCTT
AGGCAATTGCACAAAATTACTCACAAAACGATGAAATTAAGCACATTTTA
AGAACATTTCATAGAATCAAAAAGCTAAGAACATACTTAGGCTTAAAAGT
TTTTGATTTCTATTATACAGTGGTCAAAGCAGTTTTTTTCTGTGAGGCGG
AAAATTCCTTGATAGAGATATTTTGAACAGTGACACCCGCAGGCCCCACC
ATCGTTGGAGCCGAGGGCCAGAAAATTTTCAGATTTTTTACCCTCTAGAT
TGGCTGGAGAGGCACTAAAATTTGTTAATTAAAACAACTCCGAATGTTCT
TAAAATGCCTATCATACAGCGAAAATATATATCTATCTCAAATAGATTGA
AAAATAAAAATATATGAACGTCATACTACACAATAAATTGAAGTTGAGAT
AAGAATTGTTTGATACTTAAAGTTTCACGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005121XLOC_005121Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009140-exon-sc0000090-1575043694:335245..335931TCONS_00009140-exon-sc0000090-1575043694:335245..335931Clytia hemisphaericaexon
TCONS_00009140-exon-sc0000090-1575043694:332549..335211TCONS_00009140-exon-sc0000090-1575043694:332549..335211Clytia hemisphaericaexon
TCONS_00009140-exon-sc0000090-1510915933:335245..335931TCONS_00009140-exon-sc0000090-1510915933:335245..335931Clytia hemisphaericaexon
TCONS_00009140-exon-sc0000090-1510915933:332549..335211TCONS_00009140-exon-sc0000090-1510915933:332549..335211Clytia hemisphaericaexon
TCONS_00009140-exon-sc0000090-1491911889:335245..335931TCONS_00009140-exon-sc0000090-1491911889:335245..335931Clytia hemisphaericaexon
TCONS_00009140-exon-sc0000090-1491911889:332549..335211TCONS_00009140-exon-sc0000090-1491911889:332549..335211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:332549..335931 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.342616	0.246859	0.244406	0.492046	1.59724	0.98733	1.3088	1.55837	0.731713	0.455428	0.355296	0.468369	0.503029	0.360998	0.470511	0.518622	0.706477	0.636557	0.32146	0.374921	0.520574	0.388656	0.272718	0.310067	2.05765	1.77357	0.721095	0.644615	0.496962	0.404754
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009140 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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