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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009156 ID=TCONS_00009156|Name=TCONS_00009156|organism=Clytia hemisphaerica|type=transcript|length=1026bp
ATTTGTCGTTATCGCTTGTTCTTGTATTGCACATATGGCTGATTCGGTCG
CACATTTAAGTGAAGCTGCAGTTAGCCAATGCATCGAGGCTTGTTTGTCT
ATGTGTGGTTCGTCAAGAAGCTTAGCGTACTGCCCGTggagatttttcga
ttttagaaaTTCAACTTTCATATCAGTtcgtttatttttaattttgtttt
tccgTTGTTGCTTGTTGAGGGTAGACATTTGTTCAATTTCAAACTCGAGC
TCCTGGCAATAGATTTGCGCCCTTTCATGTATCGATTTTGCGTTTCTAGA
GGTCTGCCAATCAGAAACCAAGTTGAGGAGGGCTTCATTGGTTGATAGCA
AATAGGTACTGAAGTTGATGATCGAGTTTTTGAAGTGTTCAGTTAAGTTT
ATCAGACCTCTACCACCCTCCTTTCTTGGGATGTATAATCTCGTTATGTC
GCTTTGGCTGTGCATTGCGTGGAACGATTGCAGCATCTTGCGTGTCTCTC
GGTCGATGATTTCAAGTTCGGTTATGGACCAATCTAGTATTGGAAATCCG
TATGACAGTGCCGGTACTGCCCACATGTTGATGGCGTTGATTAGATGTTT
ACTGGaaagttcactttttaataTCATTTTAAGTCGGGNcatattgcttt
tggaagattgtttaaggtttataacagatcattttcttatttgaataaga
aagagtaagtttccacggttcgtacttTGAGCATGGGAAATACGaaacaa
tctaccaaaattGGCACCCTTTCATCAAAAAAATACCATATCTGtcgttt
taaaagtttatagttTTTTCGTTAAAGAATGATGCTTGCTTTAGAATTTT
TGTTGGTACTTTCAGATAAAGTGTAcgcagttgcctttctcatacagatt
tgtaaaaggggtggctttctaaattaaaaatggagaaaaagagactgttc
aaaatgaaacaaaactgttaaagatatgaaaacctacttttatagatagg
aaatgTTGTTCTTCTCTGGAAGATCA Run BLAST on NCBI protein sequence of TCONS_00009156-protein >TCONS_00009156-protein ID=TCONS_00009156-protein|Name=TCONS_00009156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MXRLKMILKSELSSKHLINAINMWAVPALSYGFPILDWSITELEIIDRET
RKMLQSFHAMHSQSDITRLYIPRKEGGRGLINLTEHFKNSIINFSTYLLS
TNEALLNLVSDWQTSRNAKSIHERAQIYCQELEFEIEQMSTLNKQQRKNK
IKNKRTDMKVEFLKSKNLHGQYAKLLDEPHIDKQASMHWLTAASLKCATE
SAICAIQEQAITTN Run BLAST on NCBI transcript from alignment at sc0000090:5115..6140 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009156 ID=TCONS_00009156|Name=TCONS_00009156|organism=Clytia hemisphaerica|type=transcript|length=1026bp|location=Sequence derived from alignment at sc0000090:5115..6140 (Clytia hemisphaerica)
TGATCTTCCAGAGAAGAACAAcatttcctatctataaaagtaggttttca
tatctttaacagttttgtttcattttgaacagtctctttttctccatttt
taatttagaaagccaccccttttacaaatctgtatgagaaaggcaactgc
gTACACTTTATCTGAAAGTACCAACAAAAATTCTAAAGCAAGCATCATTC
TTTAACGAAAAaactataaacttttaaaacgaCAGATATGGTATTTTTTT
GATGAAAGGGTGCCaattttggtagattgtttCGTATTTCCCATGCTCAa
agtacgaaccgtggaaacttactctttcttattcaaataagaaaatgatc
tgttataaaccttaaacaatcttccaaaagcaatatgNCCCGACTTAAAA
TGAtattaaaaagtgaactttCCAGTAAACATCTAATCAACGCCATCAAC
ATGTGGGCAGTACCGGCACTGTCATACGGATTTCCAATACTAGATTGGTC
CATAACCGAACTTGAAATCATCGACCGAGAGACACGCAAGATGCTGCAAT
CGTTCCACGCAATGCACAGCCAAAGCGACATAACGAGATTATACATCCCA
AGAAAGGAGGGTGGTAGAGGTCTGATAAACTTAACTGAACACTTCAAAAA
CTCGATCATCAACTTCAGTACCTATTTGCTATCAACCAATGAAGCCCTCC
TCAACTTGGTTTCTGATTGGCAGACCTCTAGAAACGCAAAATCGATACAT
GAAAGGGCGCAAATCTATTGCCAGGAGCTCGAGTTTGAAATTGAACAAAT
GTCTACCCTCAACAAGCAACAAcggaaaaacaaaattaaaaataaacgaA
CTGATATGAAAGTTGAAtttctaaaatcgaaaaatctccACGGGCAGTAC
GCTAAGCTTCTTGACGAACCACACATAGACAAACAAGCCTCGATGCATTG
GCTAACTGCAGCTTCACTTAAATGTGCGACCGAATCAGCCATATGTGCAA
TACAAGAACAAGCGATAACGACAAAT Coding sequence (CDS) from alignment at sc0000090:5115..6140 >TCONS_00009156 ID=TCONS_00009156|Name=TCONS_00009156|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0000090:5115..6140 (Clytia hemisphaerica)
atgNCCCGACTTAAAATGAtattaaaaagtgaactttCCAGTAAACATCT
AATCAACGCCATCAACATGTGGGCAGTACCGGCACTGTCATACGGATTTC
CAATACTAGATTGGTCCATAACCGAACTTGAAATCATCGACCGAGAGACA
CGCAAGATGCTGCAATCGTTCCACGCAATGCACAGCCAAAGCGACATAAC
GAGATTATACATCCCAAGAAAGGAGGGTGGTAGAGGTCTGATAAACTTAA
CTGAACACTTCAAAAACTCGATCATCAACTTCAGTACCTATTTGCTATCA
ACCAATGAAGCCCTCCTCAACTTGGTTTCTGATTGGCAGACCTCTAGAAA
CGCAAAATCGATACATGAAAGGGCGCAAATCTATTGCCAGGAGCTCGAGT
TTGAAATTGAACAAATGTCTACCCTCAACAAGCAACAAcggaaaaacaaa
attaaaaataaacgaACTGATATGAAAGTTGAAtttctaaaatcgaaaaa
tctccACGGGCAGTACGCTAAGCTTCTTGACGAACCACACATAGACAAAC
AAGCCTCGATGCATTGGCTAACTGCAGCTTCACTTAAATGTGCGACCGAA
TCAGCCATATGTGCAATACAAGAACAAGCGATAACGACAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009156-exon-sc0000090-1491911889:5115..6140 | TCONS_00009156-exon-sc0000090-1491911889:5115..6140 | Clytia hemisphaerica | exon |
| TCONS_00009156-exon-sc0000090-1510915933:5115..6140 | TCONS_00009156-exon-sc0000090-1510915933:5115..6140 | Clytia hemisphaerica | exon |
| TCONS_00009156-exon-sc0000090-1575043694:5115..6140 | TCONS_00009156-exon-sc0000090-1575043694:5115..6140 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:5115..6140 . |
Blast
The following BLAST results are available for this feature:
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