TCONS_00009197 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009197
Unique Name	TCONS_00009197
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1719

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000091:420543..424733+
coding sequence from alignment at sc0000091:420543..424733+

transcript sequence

>TCONS_00009197 ID=TCONS_00009197|Name=TCONS_00009197|organism=Clytia hemisphaerica|type=transcript|length=1719bp
ctatttttttgaatttttctaaatatataaatcaaaccaatcaaacattc
tctCTATACATGAATTCAATTTTAGATAAGTTTAACTTTAAAAGCATGTC
GCGAAGCCCGCCAAGAAATATTATACCAGCTGGTAGAAATACAAACAGTA
ATGACTCTCTTTCAATGCGTCGAAGAGTTTTCATTGGAAACTTGAACACT
GAGAAAACTTCGAAAACAGAAGTTGAAGAAATATTCAACAAGTTTGGAGA
ATTAGAAAGTTGTTCTTTACACAAGAATTTTGGATTTGTGCAATTTGTTC
GTGAAAAAGATGCGGATGCTGCTGTTACAGCGATGCATGGCAAGATGATC
CTTGGCAAAAGAGTTGATGTCAACTTGGCTGGTTTGCGTCGAAAGACACA
ATTGAAAGATAAATATGAAAAACCACCAGACAAAGAAGAAGTTGTACCAG
ATGATATGCGCAAATTTAGCGAACAAGCATCACGCAAAAAAAGGAGGGAT
AGGTCAAGATCACCACGCAGAGAAGGTCGTGGTGGTGATCGAAGAAGATC
ACTTTCGCCAATGTCAAGATATGAAGAATATCGAAGAGGTCCTGGGTATC
ATGACAGACCTTATGAAAGAGACACGGGATATGGTCGTGCACCGCCTCCA
TCAGCCGCCGGTGGTTACAACTACCCACCACGTGATCCATATGCTTATCA
CCCTCCAGCACCTCGTGTTGCTCCAAGACCTGCTATTGATTGTGAAGTTG
TTGCATTGTCGAAGGAAGATAGTCGCTATGCAGAAGATGTGGAGAGTCGT
TTGCGAAGTATTGGCCTGGTTTGCAATATTGGTTACCCACCCATCGATTT
ATCCACAGTTGAAGTTGTCGATCGAATCGCTCGCTGTGGTACTCTGTACG
CCATTGTTCTCAGCTCTCAAAACGCCACCCATCAATCGTGCACACTGAAT
GTTTTACATGGTGCAAGACAAGAACACCGTAACATGCCGCTCAAAGATGC
ACTCTCTTTTGTGGCTAGAAATTTCGACCAATACCTCAAAGACTTGAGTA
GGGAGCCTCCTCCCCCTTCTTCTTACTACCCTTCATCATATAACTACCCA
CCCCCTCCTCGTGCAGATTACGGTAGAGGGTACCCACCAGAACCTGCATA
CGGAGGCTATGGTGGGCAACATAGCTACCCACCTCCTCGGCATACGGAAC
AACCAGCCTACAGGAGTGAGGAACGGGTAGGTGGTTATGATGATAGGGGA
AGTATAAGTAGTCAGGGGAGCGAAAGGAGCTCAGAGACCAAAAAACTCTC
AGCTGAGGAGCTGAATGAAATGATCGAAAAATTGAAACGTGAGAAAGAAC
AGTTAGAAATTGCTGGCTCCGTTGTAAAACCTGCTACAGAAACACGTGAA
AAGTCAGCAGAACCAGTACCTGCTGCTAATGGCGATCAATAAAAATGAAT
CCAGAGACAATAAATTGGCATCATATTTTCTGGAAAGTTTTGAAAGAGta
ctaaaaaaacttttgctcaagacttaaggtggtagtctacccaaaaataa
aaaatcatcgaaaaaattgtcgaattctggtttttgggtgttttgagatc
cttaggtTTTTCTGaacatcttctgaaaatttcagagctatatctttatc
attcaggccgcagtgagcatttttatcctGTTGGGTGCTTGAAAAATCGC
CCTAGCAACAGAAAAAATC

Run BLAST on NCBI

protein sequence of TCONS_00009197-protein

>TCONS_00009197-protein ID=TCONS_00009197-protein|Name=TCONS_00009197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
IFLNFSKYINQTNQTFSLYMNSILDKFNFKSMSRSPPRNIIPAGRNTNSN
DSLSMRRRVFIGNLNTEKTSKTEVEEIFNKFGELESCSLHKNFGFVQFVR
EKDADAAVTAMHGKMILGKRVDVNLAGLRRKTQLKDKYEKPPDKEEVVPD
DMRKFSEQASRKKRRDRSRSPRREGRGGDRRRSLSPMSRYEEYRRGPGYH
DRPYERDTGYGRAPPPSAAGGYNYPPRDPYAYHPPAPRVAPRPAIDCEVV
ALSKEDSRYAEDVESRLRSIGLVCNIGYPPIDLSTVEVVDRIARCGTLYA
IVLSSQNATHQSCTLNVLHGARQEHRNMPLKDALSFVARNFDQYLKDLSR
EPPPPSSYYPSSYNYPPPPRADYGRGYPPEPAYGGYGGQHSYPPPRHTEQ
PAYRSEERVGGYDDRGSISSQGSERSSETKKLSAEELNEMIEKLKREKEQ
LEIAGSVVKPATETREKSAEPVPAANGDQ

Run BLAST on NCBI

transcript from alignment at sc0000091:420543..424733+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009197 ID=TCONS_00009197|Name=TCONS_00009197|organism=Clytia hemisphaerica|type=transcript|length=4191bp|location=Sequence derived from alignment at sc0000091:420543..424733+ (Clytia hemisphaerica)
ctatttttttgaatttttctaaatatataaatcaaaccaatcaaacattc
tctCTATACATGAATTCAATTTTAGATAAGTTTAACTTTAAAAGCATGTC
GCGAAGCCCGCCAAGAAATATTATACCAGCTGGTAGAAATACAAACAGTA
ATGACTCTCTTTCAATGCGTCGAAGAGTTTTCATTGGAAACTTGAACACT
GAGAAAACTTCGAAAACAGAAGTTGAAGAAATATTCAACAAGTTTGGAGA
ATTAGAAAGTTGTTCTTTACACAAGAATTTTGGATTTGTGCAATTTGTTC
GTGAAAAAGATGCGGATGCTGCTGTTACAGCGATGCATGGCAAGATGATC
CTTGGCAAAAGAGTTGGTATGTATTTTTAGAATGTGCTCCTATACTTCTT
TTTCTTTACCATTATCCTAAAGTTGAAAgttcacaatttttttaattttt
gaatacTAGGCTCCTCAGATGTTTGATAGATTGACTATTCTTATCATAAT
AGCTTCATCCCCCATTCTCTGCCTGCAGGAGCCTTTAGGAGACggaattt
ttctgaaatttcataaGGGTACTTTCAACTTCAAAGGGAAACTGCTAACT
CGATTCAATAATTTTTATGTAATTATTAAATCCAAGGGGGATCTTTTGAT
CTTGCATTTGTAGGGTACTTAGGTCTCAGGAAAGGGACCTAAATTCTTTA
GAGTTATGAACCTTTTAAGTTATTTTGTTTCTTTAACACTCAACAGCGCC
AAATATATGCTAATTTTTTTCTGACCTCTAGATGTCAACTTGGCTGGTTT
GCGTCGAAAGACACAATTGAAAGATAAATATGAAAAACCACCAGACAAAG
AAGAAGTTGTACCAGATGATATGCGCAAATTTAGCGAACAAGCATCACGC
AAAAAAAGGAGGGATAGGTCAAGGTAAGCATTTTTTAATAGGTCTCGAAT
ACTCAGTCCATTCTTCATGGTGTGAATCACCTCCAATAAAGGTAGGAGGG
TTAATAATATTTTGTTTAAATGTATCACATCTCTGTCATATATGGGTGAA
TTGCGCCAAATCTGTACCGTGGTTTTGTAAACAAGGCAAACTGTATTCAA
ATTATCATTAAAGTGGATGTGTCAGGTATTAGAGCTTTAGGTATATTTCT
TCTTTGTAATATTAGCAAAAATCTGTTATGGACGGGACGTCCCGTCCATC
ACACATATGCCTGTCTTTCTACCAGATTTTTGAAGacagtttgttttgtt
ttcaaaaccacGGTACAGATTTGGTGCAATGCACCCATATTGGTTAGCAA
AAGTTTTGCCTGCGCTGCCATTTACATCAATCTACTGTTGAAATTTTTGT
GTAGTTAAAAGGTTGATAGACCACCACTGTAAATAGTGGGAGGTCGTGAA
ATTTCAAAAAGGGAGGAAACAATATAAATACGGGTGTGGAGTTCCCTCTA
AAGCTTTCTGCATCTATAATAAGTTTGATGACAAATTCCTTTTTCGATTC
ACTGCACTCCCTGAATATAAAAATGTTCTCGCAACATACTAGTCAGGCCA
ACATTAGATAAATCGGTAAATAATATACTATTGAAGTTTTATCAAAACCA
TGTCCTTTTTCACTCCACCAGATCACCACGCAGAGAAGGTCGTGGTGGTG
ATCGAAGAAGATCACTTTCGCCAATGTCAAGATATGAAGAATATCGAAGA
GGTCCTGGGTATCATGACAGGTTAAccattaaaatttgatacttTTCACA
AGGATGAAACTTCTTTTGACggaattaatattttttaaagtttaattttt
cactttttgaacgGACTTTGGAAAACAAATGAGTGGAAAATATAAGCGGA
TatttgaatatctttccaacgttACCAATTTTTTTACTATATGACGAACA
CTTGGTAAGTTTCGGTTAAAAATAAATGCACACCTTTTTGACACAGACTT
TAGACGGAAGGAATAACAAGGAATTTATGAATTAAATGTTCTCTACAGAA
GATTATGTTTCTCACACCTTTTCCTTTTTCACAGACCTTATGAAAGAGAC
ACGGGATATGGTCGTGCACCGCCTCCATCAGCCGCCGGTGGTTACAACTA
CCCACCACGTGATCCATATGCTTATCACCCTCCAGCACCTCGTGTTGCTC
CAAGACCTGCTATTGATTGTGAAGTTGTTGCATTGTCGAAGGAAGATAGG
TATTGCGTCTTGTATTTTTTCTTGGGCGAGATTTCGTTATTAGACTGGTT
GTATGAAACGGTTGGGTTACTTAGATAAATGTATGCAAACAGGTCTGTAG
GTGTTTTTTCACTGGAAGACAGTCTTGATATATTGTTGTACGTgaagaaa
attaaagaattcctgtccaactatcttccttcaggagatttgggtggcag
agcagccaGCATATGCATTTCCTCCTTATTaagactcgtcagcactgcat
actgcaccctggctagGCAGATCGAATTGCCTAGCATCTCACACCATAAA
ACTAATTCTGGTGCAGACTGAAATAGATATATAGTGCATATTGCATTAGA
TTGAGCCAAAGTTCAGAGAGTTCCTTAAAACTCGTTGATTGTTCCTcaca
ttttaaagattttgagatCAAGGGTTGAAAGTACCTTTTAGTCATTCAAA
ACTCATTAAATTTGAACTCGTCAATTCATTCTTTTCAGTCGCTATGCAGA
AGATGTGGAGAGTCGTTTGCGAAGTATTGGCCTGGTTTGCAATATTGGTT
ACCCACCCATCGATTTATCCACAGTTGAAGTTGTCGATCGAATCGCTCGC
TGTGGTACTCTGTACGCCATTGTTCTCAGCTCTCAAAACGCCACCCATCA
ATCGTGCACACTGAATGTTTTACATGGTGCAAGACAAGGTTTGTTTGTCC
ATCTTTTTCAGATACTTTCCTCTACTGTTTAAAGCTTTCGAACTCTCTTG
AAGATATTTATATTGAGAAGAGCTTTTAAAATCATGTTTTAAGCAAGCAG
AGTGACTTGTGCTGTCTGacttaaaattgaatattatattTCAGGTTTAA
CAACTTTTCCACGGACATTTTTCTCACCgactttttcgtttttcttcttt
ttcatttttcactcattttcgATGACCATCAACACCTTTTTGATGACATG
CAGAACACCGTAACATGCCGCTCAAAGATGCACTCTCTTTTGTGGCTAGA
AATTTCGACCAATACCTCAAAGACTTGAGTAGGGAGCCTCCTCCCCCTTC
TTCTTACTACCCTTCATCATATAACTACCCACCCCCTCCTCGTGCAGATT
ACGGTAGAGGGTACCCACCAGAACCTGCATACGGAGGCTATGGTGGGCAA
CATAGCTACCCACCTCCTCGGCATACGGAACAACCAGCCTACAGGAGTGA
GGAACGGGTAGGTGGTTATGATGATAGGGGAAGTATAAGTAGTCAGGGGA
GCGAAAGGAGCTCAGAGACCAAAAAACTCTCAGCTGAGGAGCTGAATGAA
ATGATCGAAAAATTGAAACGTGAGAAAGAACAGTTAGGTAAGCacaattt
tcctttcttttgttttgttttactttgatcttgttttttatatttgtttg
tttttgatatttgatGGCTATGTGAGTGCATGAAATCTAATACAAATGAG
acggagtttttataagatactttaataattggtcagtTGAAGTAGTAAAg
atgatgcgttctttagaaaatttAATATGGAGAAAGTCATTCAGGTATTT
CTTATTACAATGAATTTGGCtacatttattaatttttacaatttaactTC
ATTTCTATATTTTCTGTTATTCTTTTAGAAATTGCTGGCTCCGTTGTAAA
ACCTGCTACAGAAACACGTGAAAAGTCAGCAGAACCAGTACCTGCTGCTA
ATGGCGATCAATAAAAATGAATCCAGAGACAATAAATTGGCATCATATTT
TCTGGAAAGTTTTGAAAGAGtactaaaaaaacttttgctcaagacttaag
gtggtagtctacccaaaaataaaaaatcatcgaaaaaattgtcgaattct
ggtttttgggtgttttgagatccttaggtTTTTCTGaacatcttctgaaa
atttcagagctatatctttatcattcaggccgcagtgagcatttttatcc
tGTTGGGTGCTTGAAAAATCGCCCTAGCAACAGAAAAAATC

Coding sequence (CDS) from alignment at sc0000091:420543..424733+

>TCONS_00009197 ID=TCONS_00009197|Name=TCONS_00009197|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at sc0000091:420543..424733+ (Clytia hemisphaerica)
atttttttgaatttttctaaatatataaatcaaaccaatcaaacattctc
tCTATACATGAATTCAATTTTAGATAAGTTTAACTTTAAAAGCATGTCGC
GAAGCCCGCCAAGAAATATTATACCAGCTGGTAGAAATACAAACAGTAAT
GACTCTCTTTCAATGCGTCGAAGAGTTTTCATTGGAAACTTGAACACTGA
GAAAACTTCGAAAACAGAAGTTGAAGAAATATTCAACAAGTTTGGAGAAT
TAGAAAGTTGTTCTTTACACAAGAATTTTGGATTTGTGCAATTTGTTCGT
GAAAAAGATGCGGATGCTGCTGTTACAGCGATGCATGGCAAGATGATCCT
TGGCAAAAGAGTTGATGTCAACTTGGCTGGTTTGCGTCGAAAGACACAAT
TGAAAGATAAATATGAAAAACCACCAGACAAAGAAGAAGTTGTACCAGAT
GATATGCGCAAATTTAGCGAACAAGCATCACGCAAAAAAAGGAGGGATAG
GTCAAGATCACCACGCAGAGAAGGTCGTGGTGGTGATCGAAGAAGATCAC
TTTCGCCAATGTCAAGATATGAAGAATATCGAAGAGGTCCTGGGTATCAT
GACAGACCTTATGAAAGAGACACGGGATATGGTCGTGCACCGCCTCCATC
AGCCGCCGGTGGTTACAACTACCCACCACGTGATCCATATGCTTATCACC
CTCCAGCACCTCGTGTTGCTCCAAGACCTGCTATTGATTGTGAAGTTGTT
GCATTGTCGAAGGAAGATAGTCGCTATGCAGAAGATGTGGAGAGTCGTTT
GCGAAGTATTGGCCTGGTTTGCAATATTGGTTACCCACCCATCGATTTAT
CCACAGTTGAAGTTGTCGATCGAATCGCTCGCTGTGGTACTCTGTACGCC
ATTGTTCTCAGCTCTCAAAACGCCACCCATCAATCGTGCACACTGAATGT
TTTACATGGTGCAAGACAAGAACACCGTAACATGCCGCTCAAAGATGCAC
TCTCTTTTGTGGCTAGAAATTTCGACCAATACCTCAAAGACTTGAGTAGG
GAGCCTCCTCCCCCTTCTTCTTACTACCCTTCATCATATAACTACCCACC
CCCTCCTCGTGCAGATTACGGTAGAGGGTACCCACCAGAACCTGCATACG
GAGGCTATGGTGGGCAACATAGCTACCCACCTCCTCGGCATACGGAACAA
CCAGCCTACAGGAGTGAGGAACGGGTAGGTGGTTATGATGATAGGGGAAG
TATAAGTAGTCAGGGGAGCGAAAGGAGCTCAGAGACCAAAAAACTCTCAG
CTGAGGAGCTGAATGAAATGATCGAAAAATTGAAACGTGAGAAAGAACAG
TTAGAAATTGCTGGCTCCGTTGTAAAACCTGCTACAGAAACACGTGAAAA
GTCAGCAGAACCAGTACCTGCTGCTAATGGCGATCAATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005163	XLOC_005163	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009197-protein	TCONS_00009197-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000091	supercontig	sc0000091:420543..424733 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.7341	26.8027	33.178	33.7857	8.65639	9.69328	18.8898	19.8724	19.1176	22.7476	19.1087	13.0227	16.6801	13.9114	17.8949	11.8185	28.5683	22.808	11.0355	13.3765	10.7685	13.4255	26.0627	24.2747	15.0946	12.1622	15.0808	11.6807	18.9559	18.93

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR004154	Anticodon-bd

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

Blast

[Close]

BLAST of TCONS_00009197 vs. Swiss-Prot (Human)
Match: NCOA5 (Nuclear receptor coactivator 5 OS=Homo sapiens GN=NCOA5 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 9.775e-21
Identity = 38/100 (38.00%), Postives = 70/100 (70.00%), Query Frame = 3

Query:  735 IDCEVVALSKEDSRYAEDVESRLRSIGLVCNIGYPPIDLSTVEVVDRIARCGTLYAIVLSSQNATHQSCTLNVLHGARQEHRNMPLKDALSFVARNFDQY 1034
            +DC V+ ++K+   YAE V  ++R +G+V ++ +   ++S  + ++ ++R G+ +AIV++ Q+  H+SCT+N++ G  QEHRNMP  DA+  VARN+++Y
Sbjct:  198 VDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERY 297

The following BLAST results are available for this feature:

BLAST of TCONS_00009197 vs. Swiss-Prot (Human)

BLAST of TCONS_00009197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NCOA5	9.775e-21	38.00	Nuclear receptor coactivator 5 OS=Homo sapiens GN=...	[more]

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TCONS_00009197 (transcript) - C. hemisphaerica