TCONS_00009206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009206
Unique NameTCONS_00009206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1074

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009206 ID=TCONS_00009206|Name=TCONS_00009206|organism=Clytia hemisphaerica|type=transcript|length=1074bp
cTTGAAGTTATCTTAACCATTCTGGCGGAAATACGGAAAGGACGAAGATC
AGCGCAAAACAGTAATGGCTTTCACTATTCTATGGAACCAGTTGGGGATT
gccgaaaaatattttcaccacTATATGAGAGAGtTGACGATAGAGTCGGA
TGATTTCTTCGCCATCTTTATGTTATGTATCGCGTACCAGCGAATGAACT
TCCTGGAGCATTTCAACCTcttcaaaccaaagaaaatcaaattcaatttt
gaaGATCTTGAAATTTTGTATGGTTTCGGTGCACATGATGGCAACACTAA
GAGTTTACTGAGGGAAGAGTTTGAGAAAGGATGGAAAGATGCAGATATTC
CCAAACTGAAGCTTTTCACTGAAATGACCAGACTTAATAAACATTCTCAT
GCAGCTGTCACCATGGAACATTCTAGAAATATACTTCTCCGTTTTTGTAA
ACGAATCTGCAAATCAGAGCAGACTTTCCTACCAAAGGTTCCAAACAAAA
TACCTGCAGAGTCCAGTCACCCACAAGTTCTTGAGGAACATCAAATTGAC
ATTGTTAACGAGTTGTTTTTATGGTCAGTCATCAATGGTTATCAAGAATT
GTCGTTGTGGTTATGGGACAAATCTTACGGTGACGAAAGCTTCATTCGAG
TTTTGATTGGTGAGGAGGTCAACctacaaatcaagaaaaaaatggaaaac
gaAAACATTCCAATGTTaccatcaaaatttaatgacaaTTATGAgACTTT
CAGGGACATGGCGGTCAGTTTCCTCAACATTTCTTTTGAACGAGACCATA
AAGAATCTATTCGATTATTATGTAAGAAATCGGAAGTTTACGAAGACGGT
GCTGAATGGGATACAACACCGCTGGATATCGCGTACGAAATCGATCGATG
CCCGACTTTTGTTGCTCACAAAAGTGTAACACATTTGATGGATAGTATCT
GGACTGGTGCCATGCCCAACAATATAGCTTGGTGGCAAgttcttttgatg
tttttctgTCCACCATTTATTTTGTTGTATGACTTTGATGATTTGGAACT
TATTAAATACAAAGAAGTGAAAGA
Run BLAST on NCBI

transcript from alignment at sc0000091:507468..510627+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009206 ID=TCONS_00009206|Name=TCONS_00009206|organism=Clytia hemisphaerica|type=transcript|length=3160bp|location=Sequence derived from alignment at sc0000091:507468..510627+ (Clytia hemisphaerica)
cTTGAAGTTATCTTAACCATTCTGGCGGAAAGTATGATTGTGTCTATGAT
TTTCCCTTTTGGATTCAGTAAAAAAAACGTCTGAAAAGTGGCCTTAGGTA
ATAACCAATTAATACCCCCATTAATATTAAATGTCTTGAGGCCAAAGACA
AACCGATTCAACATGCCAATTTTCGAATactggatgaaatgttggaccag
TTTGAGATACTGTATGACATTTCATTTTCACTTATCCTGTTATATTGAGC
CAAATAACACGAGCACCCCATACGCATTAACTTAAAAGTTTAaattatct
tcattttttttctcagagTACGGAAAGGACGAAGATCAGCGCAAAACAGT
AATGGCTTTCACTATTCTATGGAACCAGTTGGGGATTgccgaaaaatatt
ttcaccacTATATGAGAGAGGTAAGGAGTAAGAAATGGAGATTTGGTTCA
AATAGATAGATGATGGCCAGAAGGCGGGTGAAATTAGGACAATAGTTCTA
AAGCATTTTTTAGCTCCTAATAGAACGGGTTTACAACGTCATCTTTTTGG
TATCGCAATGTCCGTTTATGCAATATACACATAGTCCCTTTTACGATATA
TTCCATGGCCGCAAAGCGAAGTGTCTTTTATGGGGCACGTGATTTTCTCC
TTACGTtcttgatttcaaaaatattaaaaatttcggGAATATAAACCCTC
TATGGCTCTATGGCAATAtaggtttttttataacaacaagctttttaaga
acataaggcttcgaaagCGGAtgtattaagaacaaattaagaactcTAGC
GGACTCTGAaatacccgatttcttaggaaattagACTAAAAATCTCacaa
aacggtgaaaataaaaacatgttgaccagaacatttttaggcttgaattt
taaaaagttaagaacatccgaaagttcctaagattttggatgttctcata
aaacaacgtgttttattttcaaatttcaatagaTATTTGTGATAAGGACC
AGGTTGTTACTAACctaaatttataataatttatCTAAATAAGTTTAAGT
TTATCGACCaagtgatattcatattggaagtttatcgtggcttggatcac
gagatttacgtctggctacgtttcgagagattcttctcccagtatcgggc
aatgtggaggatgttttcTCCAATATTTGTACTAAGACCTTCTGATTACT
CataattattttgatttctttagtTGACGATAGAGTCGGATGATTTCTTC
GCCATCTTTATGTTATGTATCGCGTACCAGCGAATGAACTTCCTGGAGCA
TTTCAACCTcttcaaaccaaagaaaatcaaattcaattttgaaGATCTTG
AAATTTTGTATGGTTTCGGTGCACATGATGGCAACACTAAGAGTTTACTG
AGGGAAGAGTTTGAGAAAGGATGGAAAGATGCAGATATTCCCAAACTGAA
GCTTTTCACTGAAATGACCAGACTTAATAAACATTCTCATGCAGCTGTCA
CCATGGAACATTCTAGAAATATACTTCTCCGTTTTTGTAAACGAATCTGC
AAATCAGAGCAGACTTTCCTACCAAAGGTTAGCATTTTTTAAGCATAAGA
TTTGCCCCCACTCATCTACATATACCCTAGCTGCTGCCTGCTACATAGAG
TGGTGCCAAATCCTTGGTAGAGTCTGAGGTTAACCTAAAAGACGCCGTAC
CTTATTTCAAAGCGCTCTTTTTTTAGACTTGTTGTGTTTTGATGTGTCCA
CTAAATAATTTCTTtgtaaacatttcaaaattcattgccattAAACCCGC
GATAGCCTTTGTTAATCTGTACAATACTCTTCTTCCTTGGAAAGATTACG
CAAAGTTCGTTGCACGGTAAGGTTTTGCTGCAAACTACTCGATATTCatc
atagaaattttatttaacCTACAGGTTCCAAACAAAATACCTGCAGAGTC
CAGTCACCCACAAGTTCTTGAGGAACATCAAATTGACATTGTTAACGAGT
TGTTTTTATGGTCAGTCATCAATGGTTATCAAGAATTGTCGTTGTGGTTA
TGGGACAAATCTTACGGTGACGAAAGCTTCATTCGAGTTTTGATTGGTGA
GGAGGTCAACctacaaatcaagaaaaaaatggaaaacgaAAACATTCCAA
TGTTaccatcaaaatttaatgacaaTTATGAGTAAGTATATTTTTGTCAT
GTCAtgcatattttgagaaaatgttagGGAGgagaattaaattgaaattt
tgcacactgttTTAGATGGTCAATATTTATCACAGAAAATTTCGAGTCAA
GAGCCCCTCCTGAGTTCCGGCAGGTGgtcaacgtgtattttacagatcgG
TCTCCAAAGTCCCAAATTCTTATGGGGCCGAATTTCTTCTGTTACTAGTC
CCTTCTATTTGACAAATCGGCATTCAAATCAGCATTCAAATCTCAGTCAA
ATCGAAcgagtcaatcagtcaatacatgattTTAGTCAAGTTTGCATTCT
GGTCTATAAAATACAAACCAGACATGTGGCCGAACcaaatttttgcaaat
tatCTTCATTTATCCGCACTGGTCGAAAGGTCACAAcacttgtcaatctt
gagattttaaagggggagggggtctcgAGCCGATGTTTTaagaaaatggg
taaaaatactaaaaaaaggtgaaaatgaaTTCAGctgaagaacattttag
gcttaaaactcaaaacgcTAAGAACCTACGTAGACTGTTGAatgttgaat
gtttttataaaaagtgaccTAGACCTTTACGCCATTAATATAACAAGACC
ATTGAATGAtccataattttttctttataggACTTTCAGGGACATGGCGG
TCAGTTTCCTCAACATTTCTTTTGAACGAGACCATAAAGAATCTATTCGA
TTATTATGTAAGAAATCGGAAGTTTACGAAGACGGTGCTGAATGGGATAC
AACACCGCTGGATATCGCGTACGAAATCGATCGATGCCCGACTTTTGTTG
CTCACAAAAGTGTAACACATTTGATGGATAGTATCTGGACTGGTGCCATG
CCCAACAATATAGCTTGGTGGCAAgttcttttgatgtttttctgTCCACC
ATTTATTTTGTTGTATGACTTTGATGATTTGGAACTTATTAAATACAAAG
AAGTGAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005168XLOC_005168Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009206-exon-sc0000091-1491911889:507468..507498TCONS_00009206-exon-sc0000091-1491911889:507468..507498Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1510915933:507468..507498TCONS_00009206-exon-sc0000091-1510915933:507468..507498Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1575043694:507468..507498TCONS_00009206-exon-sc0000091-1575043694:507468..507498Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1491911889:507786..507887TCONS_00009206-exon-sc0000091-1491911889:507786..507887Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1510915933:507786..507887TCONS_00009206-exon-sc0000091-1510915933:507786..507887Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1575043694:507786..507887TCONS_00009206-exon-sc0000091-1575043694:507786..507887Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1491911889:508691..509044TCONS_00009206-exon-sc0000091-1491911889:508691..509044Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1510915933:508691..509044TCONS_00009206-exon-sc0000091-1510915933:508691..509044Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1575043694:508691..509044TCONS_00009206-exon-sc0000091-1575043694:508691..509044Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1491911889:509392..509648TCONS_00009206-exon-sc0000091-1491911889:509392..509648Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1510915933:509392..509648TCONS_00009206-exon-sc0000091-1510915933:509392..509648Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1575043694:509392..509648TCONS_00009206-exon-sc0000091-1575043694:509392..509648Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1491911889:510298..510627TCONS_00009206-exon-sc0000091-1491911889:510298..510627Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1510915933:510298..510627TCONS_00009206-exon-sc0000091-1510915933:510298..510627Clytia hemisphaericaexon
TCONS_00009206-exon-sc0000091-1575043694:510298..510627TCONS_00009206-exon-sc0000091-1575043694:510298..510627Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:507468..510627 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166793	0	0	0	0.0107078	0.274039	0	0.00478983	0	0.01714	0	0.185754	0.394276	2.64747	4.9412	8.84918	1.54175	1.48388	2.8973	2.65835	0	0.227147	0	0	0	0.00688124	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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