TCONS_00009211 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009211
Unique Name	TCONS_00009211
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1113

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000091:545168..548441+
coding sequence from alignment at sc0000091:545168..548441+

transcript sequence

>TCONS_00009211 ID=TCONS_00009211|Name=TCONS_00009211|organism=Clytia hemisphaerica|type=transcript|length=1113bp
CGAGTAATCAATCAACCCTTGCAATATCAACCCTTCTATCACGAACCCCC
GGATTgtaaagaaaacaatttcagccaatcagaatcaAGAGAATCGACGA
TACAACCCCTATATAACGATGCATCAAAGCAGGTTCAGAATCACTTACAA
CTTGGATTCGagaggaaaaagaagaagaaaacgcAGAAATTCAAAAACTA
AACATGGCTTGGGTCAAACTTTTCGCTCTTGCTTTCATTGCATTAGCAGC
TgCAAGTGATTATCATTTGGAGTTCAATGAAAAACAACAGAAATATGACG
AACGAGTTCACATTGACAAACAAAATGGTATCCTCATCTACAGAGTGCCA
AAACACGCTGGAGTGGTTGCTGCTCACTATTTGAAAGATTTCAATAagCA
AATGACAGTCTTGAAGGTTTTCACAGAGAAAAGATGCTACATTTCAAAGA
TGGGAAAAGATGAACCATCAATCGATGACATTGAATTGGGAATGCAAAAA
GCCAATGGAGTTTTTGATTCCAAGAAATATTGGATTGAAACTGAAGACGT
CATCACCCTTGGTCACGCAAACAAATTAAGCCTTtcgtccgccattttga
atttctgtGGAAGTTTTGACATCTTGGACACTGTGAAAAACAACCAACAA
ACACGGGAAGCACTCAAAATGAAAGCCGTTGCCCAATACAAAAGTGGAAA
AAGCAAACGATTACTCGTCGAAGATTACGTCTACTGCAAAAACGATCAAT
CAAAAATGAGCGCTGAAATGGccaaatgtaataaaaaattcGATCAACTT
GAATTCAACTGCAGATTCGTCAGACTTGGCACTTGCATTTACACAGTCAA
ATGTCTCTTGACACAACAAGGATACAATTGCCCTGGTACACATCAATACA
CTCATTTGAACTGCTGTACAATCAGATGTAAAGCttagataaataaattt
gaaatttatatcagctaaatgattgaaaaaatacttcaaatGTATACAAA
ATCTTTCTATTGTTTGTAATTTAAAGTCCAAATTTCAATACCCAACTCAT
CTCCTAACAAAATCCTTAGACAATTGAATACCCTATTTTTTAGCTATGAG
TAACCTCAAAATA

Run BLAST on NCBI

protein sequence of TCONS_00009211-protein

>TCONS_00009211-protein ID=TCONS_00009211-protein|Name=TCONS_00009211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MAWVKLFALAFIALAAASDYHLEFNEKQQKYDERVHIDKQNGILIYRVPK
HAGVVAAHYLKDFNKQMTVLKVFTEKRCYISKMGKDEPSIDDIELGMQKA
NGVFDSKKYWIETEDVITLGHANKLSLSSAILNFCGSFDILDTVKNNQQT
REALKMKAVAQYKSGKSKRLLVEDYVYCKNDQSKMSAEMAKCNKKFDQLE
FNCRFVRLGTCIYTVKCLLTQQGYNCPGTHQYTHLNCCTIRCKA

Run BLAST on NCBI

transcript from alignment at sc0000091:545168..548441+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009211 ID=TCONS_00009211|Name=TCONS_00009211|organism=Clytia hemisphaerica|type=transcript|length=3274bp|location=Sequence derived from alignment at sc0000091:545168..548441+ (Clytia hemisphaerica)
CGAGTAATCAATCAACCCTTGCAATATCAACCCTTCTATCACGAACCCCC
GGATTgtaaagaaaacaatttcagccaatcagaatcaAGAGAATCGACGA
TACAACCCCTATATAACGATGCATCAAAGCAGGTTCAGAATCACTTACAA
CTTGGATTCGagaggaaaaagaagaagaaaacgcAGAAATTCAAAAACTA
AACATGGTAAGAAGATATTTGTAGTCATACTCGTTACATACAATAGTTTA
ATATTGCTGTTAGGTTTGTCTCTTCCTTATCTTTTTCAGTACTATCCTTT
TAAATTTTCTACATTTATAAACAATTCTTTTGGCTGCCGGTGATTTTGAT
TGGGCCATAGGGGTCCTTTTTCACAATCTCGAAAGTCCcccaaaggggta
caaaaatcattaaaaagcaaagctccaaaattacgaaaatcaaaaatcga
ctccctcaaagggtcatgcatttttttaatttggactaaaatttgaaagt
ttttgactgaaattttgtgGAAATAGTCTCTAAGGGtgacaaaaacgtca
aaaaacggactaaattttcgaaatttagttTCCCTTTTCATCTTGCAAAC
CCATTGCGTTTGAAGTTTACATATTGTGGCTTTGAAAAATCACCTAAATT
TCAGTTTTCCAAAATACTGAAGAGTTAACCTGTAATATTAATCAATTACT
TTTGTTCCGTTTCAGGCTTGGGTCAAACTTTTCGCTCTTGCTTTCATTGC
ATTAGCAGCTGTAAGTAATTTATTAAAAGATTATCAAAAAGCTAATATTT
TTCGGTATTTCCTCCATCCAAAATGGAAGGTTAAATATTTTATCTGCCAA
TCAAAAGTCTTCACTGCTGTTTAGAACCATACCCAAACCCTGCAAAAGAA
CATCTACTTGTAGAAGAACcatttaaggggggggggggggcaattcCGAG
ACTCTGCCAAGTTCTGTCACATCCACTCACTTTGGTTGAAATCCTTGTTT
CGGGGCAAGATGCGTTCTAGAGCTCAACATAATATAGGacctataaattt
aaatttggcggaaagTAGTTGTAAGCGACTTTGGCGAAATCTTTTGataa
ttcgccaaattcgccaaaatttcttcccttaaggtatctcTGCACAAAAA
TATTAGatatcactttttttttgcaggCAAGTGATTATCATTTGGAGTTC
AATGAAAAACAACAGAAATATGACGAACGAGTTCACATTGACAAACAAAA
TGGTATCCTCATCTACAGAGTGCCAAAACACGCTGGAGTGGTTGCTGCTC
ACTATTTGAAAGATTTCAATAaggtattttctttttgaattatagaGAAA
GTCTCTAATTTGGGGACAAGGAGAGATATTTTCTGATCGGTAAGGTCCTG
ATGAGAAAAGGCACATGCAGATCTATAAAAGGTcagattttgaaagattt
tgtttttatttaaaatgaaGTTTAACAAAGAACtaaatttttctttccaa
aaaccaGTATGTCATAATATGGAACCTTAAAGtatgtctcaaaagtatgt
gagCAGTCTTTTTACCTTTTCTAAGCACCCATTTATGCTATGTTCGAAAC
TTAtaaaccgttggaaagatatttctaaGGAGAATAATTCAAgggtaaaa
gatttttgaaaaatttgaaaattattaagaatgatttggaaatatctttc
caacggtgtataactttcTAACAAAGCATTGCtgagaaaatgctaaaaaa
ctaaagtgtccacatacttttgagacagactttagttgtAAGTAGTAGGT
TTTTTCTGAAATGTGTGAACGATCTCTTTTATTATCTGACACTTTGATTA
CCCAGCGGTATACTCTTTATACTTTTTGTTGTAGCAAATGACAGTCTTGA
AGGTTTTCACAGAGAAAAGATGCTACATTTCAAAGATGGGAAAAGATGAA
CCATCAATCGATGACATTGAATTGGGAATGCAAAAAGTGAGTATAGAACG
GGTATAAAACTAAATGAAACTATATGAGCACTTCCAGAAAAATATTGtct
gaaaatagaatatcactTTATCGTTTAAGGATAAATTTACAGCGAAAAGC
TGCTTTCGATTtaaattttcaaccttttcaCCGCGAAATCACCCAAAAAT
CTAAGAGATCATAACAGCATTTTTCATCCTGTTCGGAGTataacatcccc
ttctcacagacccggtgggaacCTCTCCCACTGGAATAATTAGCCAAAAA
GTCTTCCCCAATGGAAATCTATGCCAGCTATAAAAAACATGGGAGTATCA
ACCCCCATCGGTTACTTTcaccccactggctgaaaaaatcttaccgGGCT
TGTAAGAAGACGGTTTTAGGAACCTTGATatctattttttaaaaacatcg
aGTGAAAATCCGTTTATTCCTTTTCCACTAACAGGCCAATGGAGTTTTTG
ATTCCAAGAAATATTGGATTGAAACTGAAGACGTCATCACCCTTGGTCAC
GCAAACAAATTAAGCCTTtcgtccgccattttgaatttctgtGGAAGTTT
TGACATCTTGGACACTGTGAAAAACAACCAACAAACACGGGAAGCACTCA
AAATGAAAGCCGTTGGTGAGTTGATTGGCTTTTGAGGGGTCTGGTAATGA
ATATACaagaaaatgacgtcaaaatactttattttaagaaaatgtcaatg
caatgacttcttagATTTGAGTGGTTTTGGAACATGGTTTTAGATTTCTC
GAAATTACCCTCTTCTCGAAGACAATCTTTACGCTTTAGCCTGACTAGTT
TTGAACTTTTCAACTTATTTAGCACGTCTAATTTTCTTCCAGCCCAATAC
AAAAGTGGAAAAAGCAAACGATTACTCGTCGAAGATTACGTCTACTGCAA
AAACGATCAATCAAAAATGAGCGCTGAAATGGccaaatgtaataaaaaat
tcGATCAACTTGAATTCAACTGCAGATTCGTCAGACTTGGCACTTGCATT
TACACAGTCAAATGTCTCTTGACACAACAAGGATACAATTGCCCTGGTAC
ACATCAATACACTCATTTGAACTGCTGTACAATCAGATGTAAAGCttaga
taaataaatttgaaatttatatcagctaaatgattgaaaaaatacttcaa
atGTATACAAAATCTTTCTATTGTTTGTAATTTAAAGTCCAAATTTCAAT
ACCCAACTCATCTCCTAACAAAATCCTTAGACAATTGAATACCCTATTTT
TTAGCTATGAGTAACCTCAAAATA

Coding sequence (CDS) from alignment at sc0000091:545168..548441+

>TCONS_00009211 ID=TCONS_00009211|Name=TCONS_00009211|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at sc0000091:545168..548441+ (Clytia hemisphaerica)
ATGGCTTGGGTCAAACTTTTCGCTCTTGCTTTCATTGCATTAGCAGCTgC
AAGTGATTATCATTTGGAGTTCAATGAAAAACAACAGAAATATGACGAAC
GAGTTCACATTGACAAACAAAATGGTATCCTCATCTACAGAGTGCCAAAA
CACGCTGGAGTGGTTGCTGCTCACTATTTGAAAGATTTCAATAagCAAAT
GACAGTCTTGAAGGTTTTCACAGAGAAAAGATGCTACATTTCAAAGATGG
GAAAAGATGAACCATCAATCGATGACATTGAATTGGGAATGCAAAAAGCC
AATGGAGTTTTTGATTCCAAGAAATATTGGATTGAAACTGAAGACGTCAT
CACCCTTGGTCACGCAAACAAATTAAGCCTTtcgtccgccattttgaatt
tctgtGGAAGTTTTGACATCTTGGACACTGTGAAAAACAACCAACAAACA
CGGGAAGCACTCAAAATGAAAGCCGTTGCCCAATACAAAAGTGGAAAAAG
CAAACGATTACTCGTCGAAGATTACGTCTACTGCAAAAACGATCAATCAA
AAATGAGCGCTGAAATGGccaaatgtaataaaaaattcGATCAACTTGAA
TTCAACTGCAGATTCGTCAGACTTGGCACTTGCATTTACACAGTCAAATG
TCTCTTGACACAACAAGGATACAATTGCCCTGGTACACATCAATACACTC
ATTTGAACTGCTGTACAATCAGATGTAAAGCttag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005172	XLOC_005172	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009211-protein	TCONS_00009211-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000091	supercontig	sc0000091:545168..548441 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.389865	0.76036	0	0	0	0	0	0	0	0	0	0	81.9286	69.1917	285.796	455.899	19.9016	29.6978	248.866	332.844	63.6953	61.2254	78.0036	67.6573	142.938	230.857	3.61877	4.56417	241.696	329.621

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR007084	BRICHOS_dom

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00009211 vs. Swiss-Prot (Human)

BLAST of TCONS_00009211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00009211 (transcript) - C. hemisphaerica