TCONS_00009226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009226
Unique NameTCONS_00009226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009226 ID=TCONS_00009226|Name=TCONS_00009226|organism=Clytia hemisphaerica|type=transcript|length=333bp
CGATAACCTTACATTTTGTTGTATTTATTGGTAACATCTAACATTGAATT
TATATCTCATAGACAACTCTAAATAATACTAACATTGGCTAAATGGTTAA
ATGACAAAATGAAGGCAATCTTATGGCAAATTTTCTTGGTAGTTTCCCTC
GTTGGTCAAACTTTGTGCGCAGAGAAACCAAACTTTGTTATCATCGTAGC
TGACGATTTGGGCTGGAATGATGTCAGCTTCCATGGATCCGATCAAATCC
CAACACCGAATATTGATAAATTGGCAAAAGAAGgaattattttgaataat
tattaTGTTGCACCTATATGCTCACCATCTCGG
Run BLAST on NCBI

transcript from alignment at sc0000091:36691..43888-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009226 ID=TCONS_00009226|Name=TCONS_00009226|organism=Clytia hemisphaerica|type=transcript|length=7198bp|location=Sequence derived from alignment at sc0000091:36691..43888- (Clytia hemisphaerica)
CGATAACCTTACATTTTGTTGTATTTATTGGTAACATCTAACATTGAATT
TATATCTCATAGACAACTCTAAATAATACTAACATTGGCTAAATGGTTAA
ATGACAAAATGAAGGCAATCTTATGGCAAATTTTCTTGGTAGTTTCCCTC
GTTGGTCAAACTTTGTGCGCAGAGAAACCAAACTTTGTTATCATCGTAGC
TGACGATTTGGTAAGTACTCTAACAAACTCATAACACTTTCTGAATCCTC
GATATAGGATGGCAATCGATCCAGGGAGGTGGGATACCCAGGTATTTGCG
GATCTTCAAATCTTGAAAAATCCTGTTGTATTTTTTCTAAAAAATAAGAA
TATCGAGTCCCTCAAAAGGGTAATCGGTTCTCGCAAAAATCTCACTGAGA
TACAACCTACCTGGACATAAATTGAACATTTGAATAAATTTATTTGATTG
AAAAATTCAATTAGATTTATTTATTTTGGCCCTCATTCATGTCTGCTTTT
CCACCAAAGGGCTGGAATGATGTCAGCTTCCATGGATCCGATCAAATCCC
AACACCGAATATCGATAAATTGGCAAAAGAAGGAATTATTTTGAATAATT
ATTATGTTGCACCTATATGCTCACCATCTCGAAGCGCTATCATGACTGGA
AGATACCCTATTCATACAGGTTATCATTTTTTTTGTTCTAACCAAATGAC
TCTGGTAGTGGAAACAACTGTTACTACAGAGAGTTTACTGCTAAGCTTTT
GGGTTTTAATGTTTACTATTCTATTTGTCATTTCAGGTATGCAGGAAAGC
ACAGTGTTTGCTTCAGATACATGGGGAGTTGGTTTAAATGAAACATTTTT
ACCAGAGATTCTCAAAGAACAGGGATATTCAACGCATGCTGTCGGCAAGG
TATGTTTGTATATAATTTAATGATGTGAGATGCTGTGCAATCTTATGAAG
TGCTTGTGAGTCCCAATAAGAGCGAAATGCATACACCTGCTCTGAAAGAA
AATAGTTGGACAGTTATATATATTAATTTCATTCACTTTGAAACTTGTTT
TTACTTTGGTTTTAGTACAAGTAGTGCTCTATGAATTGCTTTCTCTGATT
CGGTTTGCTCAAGTCAATACTTAGACCAAGGACACTTGTATAGCGTATAC
AAGTGTCCTTGCTTAGACTCAAAGTAAGCCGAATTTGACCTTTCTGAAAA
ACGAGGACACTTCATCTCAATGAATGAAATAAATGTAAAATATTTTTTTA
TAGTGGCATGTTGGTATGTTTGCGAAAGAATACACTCCAACATACAGAGG
CTTTGATTCGTTTTATGGTTACTACCTTGGGAAAGCTGATTATTGGGACC
ACTCCAATAATGAGAAGTACTGGGGACTCGATCTGCATGATAATTTTGAG
GTCAGTGTTCTTTATTATATACTCAACTGCTCCCCTCTGATATTGATAAC
GATGTTGTGAAATTCTTGTTGACATATTTTTACTTGAGCATTATCATTTT
TTATAATCTAGGGTGTTACCGGATTTGTGGGTTGTCTGACTGAAAGTTTT
TTGATTTCTTTCATAATTTCCAAAGACAGTCTATGAGGAACTGATTTCTT
CGTTTCCGTGTACTTGTGACTCTTTTAAGGATGAGCAAAGTAGAAAAGCC
AGTGACCTATCTTGTATGCCTTTTTATTTGTCTATGTGCTCCTGAGCTCA
GCCCTGGATAATTCAAATCCCTAAAAGTGATCTCTATTTGTTCTTACCAA
CATCATTATCTTGTATCTTTAATAAATTTAGATGGTACAAACATCAGCCT
TTCTTTGTTTATACTTCTAATTTTTCGTCATTTTAGCCGGTATACACACA
ATGGGGTAACTACAGTACGGAGATGTACACAGCTGAAGCAGAAGGTCGTA
TACACAATCATGACCAATCGAAACCACTCTTCTTATACCTCGCATATCAA
GCGGTTCACAGTGCTAATAGGGACGCAGATGCACTGCAAGCCCCCGATTC
ATGGATACGAAAGTATAATTACATTCAGCACGAAGGACGTAGAAAATTTG
CAGCTATGATGGGTTANCTAAAAGAGCACTCCTTCCGCCCGCGCGACTTG
CAAAAACCTCTCCTCATTGAGGAGAGGTTTTTTATACTTGATACTTGCTG
TTAAAAGTCAAGGGATGATAAAGATCCTTTCTGTCACCGTTCAAACTAAT
TTTTTTCCATTTAACAGCAAAATAAACATTTAAAACCGAAGAACCACTGC
TTAGATTGCTTANCAATGCTTATATTATGCTGAATTTTACTGCCATCTAA
ATTTCCTTGCTATTTAGCAACTCAACCATACTTCCGAACAAAACAATATT
TACCATAAATTTACTCATGTACCTGACCAATATATAGCTTATTACAGAGT
GAAACCCACTGACCTTTATATATCCATGGACCAAGCTATATCCGCCATCT
TTGATTGGTTTTTTTTTGGAATTGGTTCCCGAGAAGAAGCCATTGCAATG
TTAAAAATTAACGTCTAACGGCGCTACATCATCAAAAGTATTCGAGAACT
AGCCGTATTGTATAAGGGTNCGCAATTTGATCAACTTCAGATTCTAAGTC
CGTGTTTCGGCTTGCGGTAACTTTATTGCTGTTCACTGCTAGGGTACACC
ATTTTAAAACGGCTTCTTTCGCAGTCCTAGCTACCAAACCGAGAAAGTTT
TCGTGGCTTCAAGCCAAACCATTCAAGGTCATTTTGATAAAATCATCGGT
TTGAAGATGTGATTTATATAGCAAATTTTATAGCAAATTTTCGCTTGGGA
TAGAAGTTAAAGGTACGTGCACACAAATAGCAAAACTTCTTCGCTCATAA
ATTCGCTTTGCAAAAAGTAGATCTAGTGCTCTCGATGCACTCAAAACTAC
ATATATGAGTAGTGCCGCCATTAGGATACCATTTTCAAAAAAACTCCGAT
CNTTAGCAAAATAAGAGACACTCTAAAAATCCCTCTAATAAAGCCGCTAT
GAGACAGGTTCGTAAGAGCCTTAATGCCCAAACACACCACATAATCCACG
GCGGCACAACACCCGCCGCCACCCGCGCATCGCTCTTTTTTTCATTCTAG
TTATTCTAGTGTAAATGGTGCCTTAATAAAATCGAAGGATATTCGTCGAA
CGATGATCGAACATTTTTATCCGAATCACGAATCGTCTGTCGAAATCATC
AAAACATAAAANTCAGTCCAAAGCTCAACCATTTACGCAAATTTTATATC
GGCCAAACCTCTTAAAACAAAATTTCATGTTTTTTCGTTGCCACAGGTCC
ACGATGCTCTGGTAAAGACAGGCATGATCAATAACACAGTCATCATTTTC
ACCACAGATAACGGAGGTCCTGCTAATGGTTTTGACGCAAACTGGGCCAA
TAATTTCCCTTTAAGAGGTGTCAAGGCTACGCTATGGGAAGGTACGGCCC
GAGCGCTATTCCAACTTCGTTTCAGCATCCATTTAACGTTTTAAGGGCGT
TATAGGCGTTAGCTAGACGTTGTTTTGATATTTTCAGACATCTTGGAGAA
GGTCTTACCTGTTGCTGTATGATTCTTAAGTCGAATTCATAAGATCAAAA
GCTCTCCTTTAAGCTACTCAACCACTTTCAAATTACTTGCAATTTCATCT
ATTGAATCTTGAACGAATAAACTATTTTTTAAGAAGTCAGAAAACCAGCG
AAATTTTACGGACCTTTGACTTTTTATTATTTTAAGGAGGTGTGCGAGCG
GCTGGATTTGTTCATAGTAACTTGTTAAAGAAGCCAGGTCGAACATCCAT
GGACTTAATACACATTACCGATTGGGTTCCAACGCTGGTCAATTTAGCAG
GTGGATCTTCAAAAGCTCCCTTTGATGGTGTGGATCAATGGCCTTGTTTA
TCTGAAGGTCTACCTTCTGCTAGAGAAGAGATTTTGCTGAATATTGATCA
CCATGACTGGAAAAATAGAGCTTTACGAATGGGTGATTGGAAAATTATAC
AAGAAAGTATGATGGTTTTGATTTTTTTTCCATGCTTTCTTTTGTACGCT
AGCAATACAGCATCAGTTTTATTGAGTTGTAGATTAAAAAAGGTAGTGTC
CTTAGCGAAAAGAAAAGGTGGGATAAGATTATTGTTTTCTATTCTTATTG
ATATTGTGTGTTTCGTTAGATACTAACTACAAAATATACAAGTGTCGCTG
TATAATAACGTGGTCAATCAATTTTCCCCGACGGTCAGATTCTTTTACTT
TCAAGTATATTTTTGAATGTGAAAATATTTTTCTTCTAAAAAGCTATTTT
AATATACTGTAATCGATTTTAATCAATCATCAATGTTGAAACAATTAATG
TTTATTGTTCTTGCCTTTTAAAAATTAGATAAACAATATTATCTCCTTTA
TCTTTCCTTTTTAGCTGGTACATGGGACGGTTGGTATGCCCCGCCAGGGG
TTATTGGTATGGAAAACAATATTCTGGTTGACGACCCTTATATCACATTC
CACAGTCAACTAGTGGTCAACTGTGGTGCTAAACCTGCCAATGTTTCGAG
CACGTGTTTTAAGAAACCCAATTTCTGTTTATTCAACATCATCGACGATC
CTTGCGAATATCATGATTTGTCAGGCAAATATCCTGAACTTCTGGAAACG
ATGAAGAAAAGATTACAATTTTATGAAGATAGTGCAGTTCCACCAAGAAG
AAATGAGACAGGGGACCCCAGAGCAAACCCAAAGCTCCATAACGGTGTAT
GGGTACCTTGGATCACTCTACCTTAAAACCAAAGTCAAGAAATTGATTCT
TAAAAGGATTATTGTTATTCGTAAGGTTTGTAGGGTCCTAGACCTAACAC
CTAGAGCCACTAAAAAACTGTGCTACATTTCGTCGTCCATCGATGCATTT
TTGAATTTAGACTTTAAAGGGAACGACGCATGGTATATTTATGAAATGCT
GATCTAGCATTGGCACAAACACCCATACGGAGGAGTATTTAGGAGTGCTG
GATCATAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACGTCTTTGCAATCT
TTTTGTTTACATTTTGTCTTCATTCACTTTCGTTTACTGTTGAAAACATA
ACAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTACT
CCTTATAATTATGTGTAGTTTTTAGAGTTTATGTGTAAAGAGTTTATTTA
GAGTTTAATCGATTCACTTTCACTTCACTGTAGGAAGGGTTGTCAAGAGC
AAGGTGTTAGATTTTCAAAAGAACACACATTATGCTCAAGAATCAACTTG
TTGGTGACGTAATTGAAGTGTGTGTCATTCATTTTCTCTTTAAATGTATA
TCTTTAAACTCTCCTCTCCTTTGGACGGTGGGAACCTTTTTTGAAAATTT
TGACTTCGCAATTCCTACTCTTACATATACCTAAAAGATATATAATGATG
ACAAAAACAGACGATCTAATCCTTGGGTTGAACATTTGGTGCATGATAGA
ACGGAGTAATAAAAAGTGCTATTGATTAATACTTTAAAACTAACTTTTAG
CCTGTAATAAGCCTGTATGATGGCGGAGTACTTTCTCATATTTTAGAGAT
ACAGACACACAAACTTTTCTACTCAATGACATGCTCCTAAGCTCGACACA
CTGATTTTTTATACAAGATGACATCATCGATATGTATGCATACTTGATAC
TGCCAAAAATACAATTAAAATCTAACTGTCATAAGGTTTTTCTAATCTCC
CCATGTTATGATGTTGTCTTTAAATAATTTCTCACCGTTTTTGACAATTT
TTCAGTTTTATTTCATATATGTCATTTTGATACGCATTTCAAATTTTTAG
ATAAATACAATGTGAGTGCGATGTAACTTAGTGAGAAAACATTTTAATTA
TAAAGTCTTGTAACAACTTTCTGTCATATGATCTTGATCTTTTTGAGCAA
GTTTTTTATTTTACGTTCATTGCTAACAATTTTTTTCAGTTTCAACCTTG
TGAACTGTATAAATTTGTTGTAATATCTCCACACATAATATTGAGATTTA
TCTTAATAGACAACTCTTAACACAGGGTAAATAGTTAAATGACAAAATGA
AGGCAATTTTATGGCAATTTTTCTTGGTAGCTTCCCTCGTTGGTCAAATT
TTGTGCGCAGAGAAACCAAACTTTGTTATTATCGTAGCTGACGACTTGGT
AAGAACACGACAAATTGAACCATAGGTAAACCCAAAAATCTAATAGAAGA
AAGGGATGCTATAATCCTGAAGCAAAATCTTAAGATCTCAAATGTGCGAA
CCTTAAGATCTCCAAATTCTGTTGTAATTTTTTACAAATTCATGAATCGT
AGAAATTGAGTCCCTTAATTGAAAGGGGCGTTAATTCAGGGGTTGGACAA
TCTCACCATTCTACAACAGACCTATGACCCTGGGCTTAATAAAATTTGAA
AAGCTTTGGTCAATGAGAAAATCCACCTAAACTAATTTGTGTTAGCCTTT
TCTAATGTCTGCTTTTCCACCAAAGGGATGGAATGATGTCAGCTTCCACG
GATCAGATCAAATCCCAACACCTAACATTGATAAATTGGCAAAAGAAGGA
ATTATTTTGAATAATTATTATGTTGCACCTATATGCTCACCATCTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005176XLOC_005176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009226-exon-sc0000091-1575043694:43679..43888TCONS_00009226-exon-sc0000091-1575043694:43679..43888Clytia hemisphaericaexon
TCONS_00009226-exon-sc0000091-1575043694:43329..43379TCONS_00009226-exon-sc0000091-1575043694:43329..43379Clytia hemisphaericaexon
TCONS_00009226-exon-sc0000091-1575043694:36691..36762TCONS_00009226-exon-sc0000091-1575043694:36691..36762Clytia hemisphaericaexon
TCONS_00009226-exon-sc0000091-1510915933:43679..43888TCONS_00009226-exon-sc0000091-1510915933:43679..43888Clytia hemisphaericaexon
TCONS_00009226-exon-sc0000091-1510915933:43329..43379TCONS_00009226-exon-sc0000091-1510915933:43329..43379Clytia hemisphaericaexon
TCONS_00009226-exon-sc0000091-1510915933:36691..36762TCONS_00009226-exon-sc0000091-1510915933:36691..36762Clytia hemisphaericaexon
TCONS_00009226-exon-sc0000091-1491911889:43679..43888TCONS_00009226-exon-sc0000091-1491911889:43679..43888Clytia hemisphaericaexon
TCONS_00009226-exon-sc0000091-1491911889:43329..43379TCONS_00009226-exon-sc0000091-1491911889:43329..43379Clytia hemisphaericaexon
TCONS_00009226-exon-sc0000091-1491911889:36691..36762TCONS_00009226-exon-sc0000091-1491911889:36691..36762Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:36691..43888 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.281437	0.112694	0.195007	0.536281	0.53559	0	0	1.99235	0	3.20749	5.34041	2.61282	2.41725	3.96524	5.21839	4.35314	1.4781	1.89885	3.16377	9.76562	10.8525	6.36741	6.39817	14.4928	3.54883	0	6.75209	9.39426	1.21717
Blast
[Close]
BLAST of TCONS_00009226 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.913e-16
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:  178 PNFVIIVADDLGWNDVSFHGSDQIPTPNIDKLAKEGIILNNYYVAPICSPSR 333
            P+ V ++ADDLGWNDV FHGS +I TP++D LA  G++L+NYY  P+C+PSR
Sbjct:   45 PHLVFLLADDLGWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLCTPSR 95
The following BLAST results are available for this feature:
BLAST of TCONS_00009226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARSB1.913e-1659.62Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1[more]
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