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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009261 ID=TCONS_00009261|Name=TCONS_00009261|organism=Clytia hemisphaerica|type=transcript|length=2541bpRun BLAST on NCBI protein sequence of TCONS_00009261-protein >TCONS_00009261-protein ID=TCONS_00009261-protein|Name=TCONS_00009261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=644bp MLVHEAISVHKVLVNLFLLEKIKMFGNHLIKSTNSARLMSKRLASSYHLQRun BLAST on NCBI transcript from alignment at sc0000091:103583..114709- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009261 ID=TCONS_00009261|Name=TCONS_00009261|organism=Clytia hemisphaerica|type=transcript|length=11127bp|location=Sequence derived from alignment at sc0000091:103583..114709- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:103583..114709- >TCONS_00009261 ID=TCONS_00009261|Name=TCONS_00009261|organism=Clytia hemisphaerica|type=CDS|length=23220bp|location=Sequence derived from alignment at sc0000091:103583..114709- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009261 vs. Swiss-Prot (Human)
Match: MAOX (NADP-dependent malic enzyme OS=Homo sapiens GN=ME1 PE=1 SV=1) HSP 1 Score: 632.869 bits (1631), Expect = 0.000e+0 Identity = 303/552 (54.89%), Postives = 398/552 (72.10%), Query Frame = 3
Query: 303 KGFEILRNPKLNKSTAFTIPERQILGIHGLLPPAVNSQRVQMDRVMKQLRKLQTDLQRYIQLTQILARNERLFYQLLREYTEELLPIVYTPTVGQACQQYGLIFRDPRGLFITIHDLGHVYDIVTNWPQRKVQAVVLTDGERILGLGDLGCNGMGIPIGKLALYTACGGIHPNACLPIMIDVGTNNEALLNDPMYIGIRQRRDTSEKYDQLVDEVIMALRKRFGNQVLIQFEDFGSHNSFRLLDRYRDFCCTFNDDIQGTAAVGVAGLFATLLASGMKLTDHKFLFFXXXXXXXXXXHLIVRALMKMGLSKAQACKRIFMFDKDGLVTMTRFDAVDMPPERKLFAHNLPNIDSLEETVKTLKPTALLGVSGVGKTFTEGVCRQMCENTARPVIFALSNPTSHAECTPEEAYNWTDGKCIFASGSPFDPVTLPNGKVMSPGQGNNVYIFPGIALGVIASGAQNITEEMFLVAAEALAEQVTEADLDVGRVYPPLTNIKEVSFQIALRVAQVAYLQGLATVMPEPEDKHQLVRSVLYSPDYKSYLPTTYDYPDS 1958
+G+ + RNP LNK AFT+ ERQ L IHGLLPP+ NSQ +Q+ RV+K L +D RY+ L + RNE+LFY++L E+ +PIVYTPTVG ACQQY L+FR PRGLFITIHD GH+ ++ WP+ ++A+V+TDGERILGLGDLGCNGMGIP+GKLALYTACGG++P CLP+++DVGT NE LL DP+YIG+RQRR +YD +DE + A+ ++G LIQFEDF + N+FRLL++YR+ CTFNDDIQGTA+V VAGL A L + KL+D LF GAG AA GIAHLIV AL K GL K +A K+I++ D GL+ R + E++ FAH + +LE V+ +KPTAL+GV+ +G F+E + + M RP+IFALSNPTS AEC+ E+ Y T G+ IFASGSPFDPVTLPNG+ + PGQGNN Y+FPG+ALGV+A G + IT+ +FL AE +A+QV++ L+ GR+YPPL I++VS +IA ++ + AY + ATV PEP++K VRS +YS DY LP Y +P+
Sbjct: 14 RGYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKEGLPKEKAIKKIWLVDSKGLIVKGR---ASLTQEKEKFAHEHEEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLRQITDNIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKDAYQEKTATVYPEPQNKEAFVRSQMYSTDYDQILPDCYSWPEE 562 The following BLAST results are available for this feature:
BLAST of TCONS_00009261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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