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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009262 ID=TCONS_00009262|Name=TCONS_00009262|organism=Clytia hemisphaerica|type=transcript|length=3456bp
AAAATGTCAATGGCTTAAAGACCTTTGTTCTTTGAAACACGTGTCACCTT
TCTACTGGTTTCACACTTTCCTCTTTTTATAGCTATTCAATTTTCGTTAT
TAAATGAAGAGGTTGGCTCCCAAACCCTATAGTGGTTCATTaactacata
tttttttatcattttagtgTAAAAAAAGACAATAATCACAAACAAATCCA
AGAAACTTAACTTTCTTGTGCACCATGACTGAAGAGAAAGCGTGACTTTC
ATATAAAGAAGAGCTGAATTGctattcaattttaaattgaGGAATCGGAT
TGAATTTGGAACATCATAAGAAtggatttaaagaaaatttacacggttgt
tttgattttggtacTGACTGTCGTTGTCACTTTGTACATGCAGTACAAAG
AAGGTTTCTTCAAAATTATCATGGATTCGTCACCTATGAGAAGCCCTATG
TTAAGACCActtgatattttacagaacacTTCGTGGTCTGCAAAGTTCAA
AGAAACTATTGCTTCTTTCAGAATGACTGAAAATTTAGCCACGGGGGACT
CGAACGCAACTGCTGTACCGTTGAAggtaattaaaaaattgaaactttca
caaaaagaTATTATCAAGAGATATGAAGATCGGTTAAAACTTCGTAAAGA
CAGTTGGGAGCATCACGACGCAGTCTGCAAAATACCAAATTTAAACCCGT
TCGGGCCGAGCGGGATGAAAGCATGGGCTACCAAAACGAAACAATAttgc
aatatcaaaaagcttggaAAAATAGTCGAGAATAGATTCATAGTTGAGGA
CCCTGGAAGCAAAATCAGCTTAGTAACCATGGAATATATTCTAAGAGGGC
GAAGACGAAAGGCGGATGGTTCGTTGGACCCACCCAAAGGGCGTACGTCC
ATGGTGATGGATAGTAAATACAGTTATCATAAGGTTTTGAACGATGACTT
TCACGCACATTTCACCATCGCTTATAAAGTAATATTCAATAAAGAACGTG
GTGTATTCATGTCCAGTCCTCTGGAACATGATTTCTTTCGCGCTGTGATT
ACAATGANGGTCTGTAAAATACCTAATTTAAACCCGTTCGGGCCGAGTGG
GATGAAAGCATGGGCTACCAAAACGAAACAATATTGCGATATCAAAAAGC
TTGGAAAAATAGTCAAGAATAGATTCATAGTTGAGGACCCTGGAAGCAAA
ATCAGCTTAGTAACCATGGAATATATTCTAAGAGGACGGAAACGAAAGGC
GGATGGTTCGTTGGACCCGCCCAAAGGGCGTACGTCCATGGTGATGGATA
GTAAATACAGTTATCATAAGGTTTTGAACGATGACTTTCACGCACATTTC
ACCATCGCTTATAAAGTAATATTCAATAAAGAACGTGGTGTATTCATGTC
CAGTCCTCTGGAACATGATTTCTTTCGCGCTGTGATTACAATGAAAACAG
GCTCGAAAACCACTGAATACCACGCAACCATACACAACAAAGATGACGTG
TGTCGCAAACATGGTCGTAAATTTGATCCTAAATCAAAAACAGGATTACC
TCTCAACGTCCACATGTTTATGGTGGATGCAATCTCCAAAGGCAATGCTT
ACCGTCAGATGCCGAGATTGATGGAAATCCTAGAAGATGATGAAGATGCA
ATGGTCTTTCAAGCTCACGGTATCCATGGTGATGGCACCACGTGTCAACT
TATGGCAACCCTCGCTGGTTACAAATACAGACAAGAAGATTCGAATCCAT
GGCAACCACCAAATAAACAAAATTGTGACGGTATCGATCTCATCTTCAAA
GATTTCCATAAGGCAGGCTACACCACCCTATATAATGAAGATTTTGTTAG
TGGTAGTACCTTTCATTACAAAATGAACGGCTTCGACAAGCCCCCATCCG
ACTGGTATCCACGTCCCTACTGGATAGCTGCCCATGAACGGGTAGAAGGC
TGTGGGAGGCCTCCCTGTATTTGTGAAGACGAAGAAATGATCCGGTTCTT
GAAGACTTTCACAACGTTTTGTGAGCACGAAGCAAAATTTTCTATTCAAG
TGACAGCCAATGCGCATGATGACATGAATCTACTGTTTATGTTGGAAGAT
CAACTCATTGAATTGTACGAGTTCTACAAAGAGAAAGCTCGCGTGGAAAA
CACCATGTTAATTTTCTTTGGTGATCACGGTGCCCGTTGGGGTGCACGTG
GTAATTTCCGGAACACAAAGCAAGGTCGTTTAGAAGAATACAACCCGTTT
TATTCACTCATTCTACCGCCTAACTTCAAAAAGAATTACAGAGAATTATA
CGATAATATTAAAGCTAATCAAAACGTTTTGACTTCGCATTTTGATGTTC
ACTGGACGTTAAAGCATATTTTGTCTTATCCGAAAATCGAGGAGAAGCGT
AATTACGGACAAAGTTTATTCACAAAGATCGATCCCAAAACACGGACATG
CGATAAAACGGGAATCCCCggaaaatattgtttttgtttgtcaACAAAGA
AAATAGATGCAAATACCTCTCAAGCGAACACTATAGCTCAGACGGCTGTT
GACTTTATCAACAAAAAGATAGCTGAACATGAGAAGCCAAAAGAGTTGTG
TGCTAATCTAACTCTCAGTCGAATCATAGACTTGGAATATGCTGCAGATG
AACAAAAAAACGAAGGAATTTTTTATATCATGTTCGAGGTTGCTCCGAGC
AAAGCGACTTTTGATGTTCGCGTACGTAAAGACTTAAGTAAACAGACGAC
TTACGTTGACCCGGAAATCAGTCGGACTAACTTATATCGGAACCAACCGG
CATGTATACAGGTAGCTTACCCAAAATTAGCACCTTTTTGTTATTGCAAA
GTGCAAACTAGTTAACACAGGGTATTCTACTCTTCTCTTTATATATTTTA
ACTTTGTTCCAAATACTCAAATTTATTCTCTTATCTtagtagactagcaa
gcgtctgccattccttggacacaggaacgcggggaATAATGCTTTtgaaa
agttcttataaaaaatagaaattaccGCGGGAGGAGTCGTGGTGAACCCA
TTGCGAGCATAAGCTGCAGCGAAATaaaacgacgtggtttactagttcTA
CTATCTTagccttaaaatttttgaaagcgCAATCGAGTAAGGTGAAAATT
GCAGAAATCTTCAGGCAACCTCGCGACTGAAACTAGAACCCATGAAaccc
aaatgaaaattttgaatcggATTCACACTCCTTATATAATACTGTATACT
ATATATTCAGGAAAAGATATAGTTTATAGATAGtttatttgaaagtttta
aatgttttttcgttgtaatattttagttaaattttCAAATGCATTTTTGT
TGGGAACGGCAGATAGATAGgttttgatttatattaaagaagatgatgat
gaacagaacaaaaaaatgttgttttgttaACGTTGAGCTGTGAAAATACA
ATCGCC Run BLAST on NCBI transcript from alignment at sc0000091:126124..130274- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009262 ID=TCONS_00009262|Name=TCONS_00009262|organism=Clytia hemisphaerica|type=transcript|length=4151bp|location=Sequence derived from alignment at sc0000091:126124..130274- (Clytia hemisphaerica)
AAAATGTCAATGGCTTAAAGACCTTTGTTCTTTGAAACACGTGTCACCTT
TCTACTGGTTTCACACTTTCCTCTTTTTATAGCTATTCAATTTTCGTTAT
TAAATGAAGAGGTTGGCTCCCAAACCCTATAGTGGTTCATTAACTACATA
TTTTTTTATCATTTTAGTGTAAAAAAAGACAATAATCACAAACAAATCCA
AGAAACTTAACTTTCTTGTGCACCATGACTGAAGAGAAAGCGTGACTTTC
ATATAAAGAAGAGCTGAATTGCTATTCAATTTTAAATTGAGGAATCGGAT
TGAATTTGGAACATCATAAGAATGGATTTAAAGAAAATTTACACGGTTGT
TTTGATTTTGGTACTGACTGTCGTTGTCACTTTGTACATGCAGTACAAAG
AAGGTTTCTTCAAAATTATCATGGATTCGTCACCTATGAGAAGCCCTATG
TTAAGACCACTTGATATTTTACAGAACACTTCGTGGTCTGCAAAGTTCAA
AGAAACTATTGCTTCTTTCAGAATGACTGAAAATTTAGCCACGGGGGACT
CGAACGCAACTGCTGTACCGTTGAAGGTAATTAAAAAATTGAAACTTTCA
CAAAAAGATATTATCAAGAGATATGAAGATCGGTTAAAACTTCGTAAAGA
CAGTTGGGAGCATCACGACGCAGTCTGCAAAATACCAAATTTAAACCCGT
TCGGGCCGAGCGGGATGAAAGCATGGGCTACCAAAACGAAACAATATTGC
AATATCAAAAAGCTTGGAAAAATAGTCGAGAATAGATTCATAGTTGAGGA
CCCTGGAAGCAAAATCAGCTTAGTAACCATGGAATATATTCTAAGAGGGC
GAAGACGAAAGGCGGATGGTTCGTTGGACCCACCCAAAGGGCGTACGTCC
ATGGTGATGGATAGTAAATACAGTTATCATAAGGTTTTGAACGATGACTT
TCACGCACATTTCACCATCGCTTATAAAGTAATATTCAATAAAGAACGTG
GTGTATTCATGTCCAGTCCTCTGGAACATGATTTCTTTCGCGCTGTGATT
ACAATGANGGTCTGTAAAATACCTAATTTAAACCCGTTCGGGCCGAGTGG
GATGAAAGCATGGGCTACCAAAACGAAACAATATTGCGATATCAAAAAGC
TTGGAAAAATAGTCAAGAATAGATTCATAGTTGAGGACCCTGGAAGCAAA
ATCAGCTTAGTAACCATGGAATATATTCTAAGAGGACGGAAACGAAAGGC
GGATGGTTCGTTGGACCCGCCCAAAGGGCGTACGTCCATGGTGATGGATA
GTAAATACAGTTATCATAAGGTTTTGAACGATGACTTTCACGCACATTTC
ACCATCGCTTATAAAGTAATATTCAATAAAGAACGTGGTGTATTCATGTC
CAGTCCTCTGGAACATGATTTCTTTCGCGCTGTGATTACAATGAAAACAG
GCTCGAAAACCACTGAATACCACGCAACCATACACAACAAAGATGACGTG
TGTCGCAAACATGGTCGTAAATTTGATCCTAAATCAAAAACAGGATTACC
TCTCAACGTCCACATGTTTATGGTGGATGCAATCTCCAAAGGCAATGCTT
ACCGTCAGATGCCGAGATTGATGGAAATCCTAGAAGATGATGAAGATGCA
ATGGTCTTTCAAGCTCACGGTATCCATGGTGATGGCACCACGTGTCAACT
TATGGCAACCCTCGCTGGTGAGCTTTGAACAGTTATCTGTTATTGAGTGG
TGGCTTGATTTCGGTGTTTTTTTTTGGGGGGGAGAAGTGATTTCCAAACA
AGACTGTTTGACAAAATTACCCTTGAAAATTTTGGCTGAACTTATATTCA
GCGATATTATTGATAGAGCAATTGTCATTCAAAATTCATAGTCTATTTTA
CCAGGATTTTTGTTAATCTCATAGTTTCTATTAATCTTGATATATCCACT
GTTTCTTCAGGTTACAAATACAGACAAGAAGATTCGAATCCATGGCAACC
ACCAAATAAACAAAATTGTGACGGTATCGATCTCATCTTCAAAGATTTCC
ATAAGGCAGGCTACACCACCCTATATAATGAAGATTTTGTTAGTGGTAGT
ACCTTTCATTACAAAATGAACGGCTTCGACAAGCCCCCATCCGACTGGTA
TCCACGTCCCTACTGGATAGCTGCCCATGAACGGGTAGAAGGCTGTGGGA
GGCCTCCCTGTATTTGTGAAGACGAAGAAATGATCCGGTTCTTGAAGACT
TTCACAACGTTTTGTGAGCACGAAGCAAAATTTTCTATTCAAGTGACAGC
CAATGCGCATGATGACATGAATCTACTGTTTATGTTGGAAGATCAACTCA
TTGGTAAGAAAAGCATTTTTTATTTCACTCGCTAATATCTATCCAATTCT
CTAAAGATTTATATATTTTACCTTTCACTTGGGAGTATCGATTGTCTCTG
CGTTAAAAAATTAAAGAACCTTTTACACAGTTGTCATTTTGTGTTTCTTT
TAAATTATGGCTTCTAATAATACAAGGCATGTATATGGTTTATTTTACTG
CTATCCTCCGGGTAGAAATAGGATAATCTTTAAGATGTTTGCTCTCAGAA
TTTTCATGCTCTTGGGTATTATATTTCCTTTCATTGATCTGCGATTTTGC
AATTCTTGAAAGGGCGATTCGCTAAAGTTTATGCTCGCGAAAAAATTATT
TTTCGTCGAATTCGCGAAAGTGATTTTGGCAAATTTCGCGATTTTTCGAC
CTCGTGGAAAGTTTGTACGCCTAAAATATATCAACTTTCTTTCCTCTCCA
TTTAGAATTGTACGAGTTCTACAAAGAGAAAGCTCGCGTGGAAAACACCA
TGTTAATTTTCTTTGGTGATCACGGTGCCCGTTGGGGTGCACGTGGTAAT
TTCCGGAACACAAAGCAAGGTCGTTTAGAAGAATACAACCCGTTTTATTC
ACTCATTCTACCGCCTAACTTCAAAAAGAATTACAGAGAATTATACGATA
ATATTAAAGCTAATCAAAACGTTTTGACTTCGCATTTTGATGTTCACTGG
ACGTTAAAGCATATTTTGTCTTATCCGAAAATCGAGGAGAAGCGTAATTA
CGGACAAAGTTTATTCACAAAGATCGATCCCAAAACACGGACATGCGATA
AAACGGGAATCCCCGGAAAATATTGTTTTTGTTTGTCAACAAAGAAAATA
GATGCAAATACCTCTCAAGCGAACACTATAGCTCAGACGGCTGTTGACTT
TATCAACAAAAAGATAGCTGAACATGAGAAGCCAAAAGAGTTGTGTGCTA
ATCTAACTCTCAGTCGAATCATAGACTTGGAATATGCTGCAGATGAACAA
AAAAACGAAGGAATTTTTTATATCATGTTCGAGGTTGCTCCGAGCAAAGC
GACTTTTGATGTTCGCGTACGTAAAGACTTAAGTAAACAGACGACTTACG
TTGACCCGGAAATCAGTCGGACTAACTTATATCGGAACCAACCGGCATGT
ATACAGGTAGCTTACCCAAAATTAGCACCTTTTTGTTATTGCAAAGTGCA
AACTAGTTAACACAGGGTATTCTACTCTTCTCTTTATATATTTTAACTTT
GTTCCAAATACTCAAATTTATTCTCTTATCTTAGTAGACTAGCAAGCGTC
TGCCATTCCTTGGACACAGGAACGCGGGGAATAATGCTTTTGAAAAGTTC
TTATAAAAAATAGAAATTACCGCGGGAGGAGTCGTGGTGAACCCATTGCG
AGCATAAGCTGCAGCGAAATAAAACGACGTGGTTTACTAGTTCTACTATC
TTAGCCTTAAAATTTTTGAAAGCGCAATCGAGTAAGGTGAAAATTGCAGA
AATCTTCAGGCAACCTCGCGACTGAAACTAGAACCCATGAAACCCAAATG
AAAATTTTGAATCGGATTCACACTCCTTATATAATACTGTATACTATATA
TTCAGGAAAAGATATAGTTTATAGATAGTTTATTTGAAAGTTTTAAATGT
TTTTTCGTTGTAATATTTTAGTTAAATTTTCAAATGCATTTTTGTTGGGA
ACGGCAGATAGATAGGTTTTGATTTATATTAAAGAAGATGATGATGAACA
GAACAAAAAAATGTTGTTTTGTTAACGTTGAGCTGTGAAAATACAATCGC
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009262-exon-sc0000091-1575043694:128558..130274 | TCONS_00009262-exon-sc0000091-1575043694:128558..130274 | Clytia hemisphaerica | exon |
| TCONS_00009262-exon-sc0000091-1575043694:127922..128314 | TCONS_00009262-exon-sc0000091-1575043694:127922..128314 | Clytia hemisphaerica | exon |
| TCONS_00009262-exon-sc0000091-1575043694:126124..127469 | TCONS_00009262-exon-sc0000091-1575043694:126124..127469 | Clytia hemisphaerica | exon |
| TCONS_00009262-exon-sc0000091-1510915933:128558..130274 | TCONS_00009262-exon-sc0000091-1510915933:128558..130274 | Clytia hemisphaerica | exon |
| TCONS_00009262-exon-sc0000091-1510915933:127922..128314 | TCONS_00009262-exon-sc0000091-1510915933:127922..128314 | Clytia hemisphaerica | exon |
| TCONS_00009262-exon-sc0000091-1510915933:126124..127469 | TCONS_00009262-exon-sc0000091-1510915933:126124..127469 | Clytia hemisphaerica | exon |
| TCONS_00009262-exon-sc0000091-1491911889:128558..130274 | TCONS_00009262-exon-sc0000091-1491911889:128558..130274 | Clytia hemisphaerica | exon |
| TCONS_00009262-exon-sc0000091-1491911889:127922..128314 | TCONS_00009262-exon-sc0000091-1491911889:127922..128314 | Clytia hemisphaerica | exon |
| TCONS_00009262-exon-sc0000091-1491911889:126124..127469 | TCONS_00009262-exon-sc0000091-1491911889:126124..127469 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:126124..130274 - |
Blast
The following BLAST results are available for this feature:
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