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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009276 ID=TCONS_00009276|Name=TCONS_00009276|organism=Clytia hemisphaerica|type=transcript|length=2530bp
GGAAAATAGAATTGAAAGATTAATCATAAAGTTTTTATACAATTTTTGAT
GATATGATGATGATGCCATTGTTTTGCAATCTTTAGATGGTATCTGATGT
CctttatttgacaaaaaaatttactttttctgcGGCACACCGTCTTCATT
CCAAAGAATTATCAGATGCTGAGAATGAAAAATTTTATGGGAAATGCAAT
CGTGTACATGGACATAACTACACCGTAAAGGTCACATTGCGTGGAAAAGT
TGATCCAAAGTTAGGTTATTTCATAAATGCCCATGAGCTCAAACAGTATA
TGATCACTGCAATTGACAATGTGTTAGACCATCGAAATATAGATGTAGAC
ATTCCTTTTTTCCGCCAATATGTCAGTACTATGGAGAATTTGTCCATCTT
TATTTGGCAAAGTATGAGAGATGTGATGAAGGAACCTGATTTGCTTTATG
AAGTCAAGATCAAAGAGACGGATAGCAGTACTGTGGTTTATAGAGGCGAA
CAGACCTgatcaatatttcaaaagtcgCATTGTGAAttagaaaatataaa
caacAAAGAAGGATGGAGTTAGTGAAGGAACGTTTGAATCAAATGAAAGA
TGACTATGAAACTTCTAATGACAAGATCATCAAATTCGAAAGTGAACTCC
AAGAAAGTCGACGAAACTTAGAATCCGCTGTCAACGAGAAAGAATCACTT
TTGAGGCGTATTGAAGTTGTCGAATCACAAATCATCAATGCCAATAAGAA
TCGTGAACGGATCGTTGATGATTTGAGGTATTTGGAACGCAATACAGATA
TCAATGAGGGGAAACGAAAATTCCTCGAAAATAAAGAACTCGAAGGTGAC
ATAAATATTTGTCGACTTGAAGAGAGATTATCTGAAGTTCGAgataagtt
ttttgaaaactctATCAAATGTGAAGAGGGTGAACGCAGGCTAGCCGTAC
TCCGATCCGATTTTGATAAATTACGGTCTAGACGTTTGGAGATGCAGGAG
CATGCGGTTTACTTGCAGCGAGATTTGGATGAAAAGACATTGAAATCACG
TGAAATGGAGGATCACTTGGCAAACAATGGTGCCAAGGAATACGACGATG
AAGCCAATCTAAGGATTGTTGAGGATTTGCATCGTGAGGAATTGGATCGA
GAAGAAAGAGCCAGATTGAGAGTTCAAAAGCTACAACGCGTCATCGAAAT
GGTTGAAGATCAAATAGAAGAGGTTCGCAGGCGAAAAAAGAAGTTGCAAG
TTGAATACAAAAACTCTTTGGACATTATCGTGAATTAAGGAGAGTAATCC
ACCATTTTTCTCTTGTTGCCATGGGTGTGGAAGCCATAATGTTTATGAAT
TGGACAGTCTAACCGCAAATTGTTAAAAAGTCGAGATAATTACAAAAAGG
CAATTTATTCTTCCTGTGTTGATCAAGTattcatttttatcaatattgaa
aacattttgttatatatttatttttaaaagaagttttcattttttaaaag
caAAGTATTATATGCACTCTCGTTATTTTATTTGTTGCATAGGTAGTcag
tttctatttttaaagctATATTGCACGTGTTTTTGACAAGGTTTAGTGAA
GTGAAATGACAATAGCTTGACTTCAAATACAGGttgataataatgataat
acgtTTTGTAGGAAatagtttgatttaaaagcAAACAACTTTCAAAGACC
AGCCTCCGATACTCCTCTCGATCAAGCTCGTTTTTATGTGTTATAAAACA
GCATATAATTATATCGTTTCATTCAGAAGAGAGGGACTTGGATTTTCGAT
GTAggaagttttaacttttttttcactGTTCGTGTATATTATGTTCTCAT
GGAAAAtatcttgaatatttttttctgaagacTATTTCGTGACTAGACtt
ctgtttcactttttcttttacaGTATTTCATCTCTTAAATTTTCAGGCTT
TCAATTAttaatatttcattattttctcgAAAAGCCTTTTTCCTTCTAAA
TCTAAGGAAAATGAAAAGTCAAAACAATCTCTATAGGATTTTATGAAGAA
GTCTTTCTTAAatcttttgatttcaatttAAAGACTAGTGTAAATGGTCC
CTTAGTCCAAtaatactttcgttttctcgatGGCATTTTAGAAGGATTTT
GAAAATGATACCATTTTTTGTTATTACTTCAATTGCCATTGATACGaact
tttctttctctttttatttctttgtaaCCAGAAGAGGCTTCTTTAAACGG
CAACACTTTAGAACATTAAATAAATTTAGAAAGCAgtttattttgaagaa
tataATATTAATATAAGCAATGTATATTATgataataaattttcttttat
attgaagttgtttttattttgccattgagaaattattattattagcatat
tgtaaagaaaattgaagaatttaAAGGAAAGTAGATCTTTGGCATGATTA
CTGTCAACTTTTGAGTTGGAATCTCGAATAACTCGGTGATAAGTCTGTAA
TCAAACTTAATCTGAAACTTTCTCCTAAAT Run BLAST on NCBI protein sequence of TCONS_00009276-protein >TCONS_00009276-protein ID=TCONS_00009276-protein|Name=TCONS_00009276-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MELVKERLNQMKDDYETSNDKIIKFESELQESRRNLESAVNEKESLLRRI
EVVESQIINANKNRERIVDDLRYLERNTDINEGKRKFLENKELEGDINIC
RLEERLSEVRDKFFENSIKCEEGERRLAVLRSDFDKLRSRRLEMQEHAVY
LQRDLDEKTLKSREMEDHLANNGAKEYDDEANLRIVEDLHREELDREERA
RLRVQKLQRVIEMVEDQIEEVRRRKKKLQVEYKNSLDIIVN Run BLAST on NCBI transcript from alignment at sc0000091:248455..252421- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009276 ID=TCONS_00009276|Name=TCONS_00009276|organism=Clytia hemisphaerica|type=transcript|length=3967bp|location=Sequence derived from alignment at sc0000091:248455..252421- (Clytia hemisphaerica)
GGAAAATAGAATTGAAAGATTAATCATAAAGTTTTTATACAATTTTTGAT
GATATGATGATGATGCCATTGTTTTGCAATCTTTAGATGGTATCTGATGT
CCTTTATTTGACAAAAAAATTTACTTTTTCTGCGGCACACCGTCTTCATT
CCAAAGAATTATCAGATGCTGAGAATGAAAAATTTTATGGGAAATGCAAT
CGTGTACATGGACATAACTACACCGTAAAGGTAAAGGCCGATTTGAATTT
TAAAGGAATCTTGGACATTCATTTTTAGTTATTTCTTGACAAGTTTTCAA
AGCTACCTGATGCTTTATATTTTCCAAATGAATAATTATATTTTCACCAC
GTTTGTCATTGTAACGTCATTTTCTCTCATTTGTTTATATTATTTGTACT
AAGTGGTATTCTTTTCAGGACTTATAAACGTTTAAAGTAACTGTTTGTCA
CTCTTTTGATCACCGCACTGTAACCTTCCCATTAATACCTCTTGTGACGT
TCTTAATTTTTTCTTAAATAAAAAGTCTCTTATAATACTATGAATTTGAT
GCATTTTTACTTATATGTAAAGTGGAAAAATAATGTATACGGTTATGTTA
AAAGCTTGAAATATTTATGAATTGTGTATTTTAGGTCACATTGCGTGGAA
AAGTTGATCCAAAGTTAGGTTATTTCATAAATGCCCATGAGCTCAAACAG
TATATGATCACTGCAATTGACAATGTGTTAGACCATCGAAATATAGATGT
AGACATTCCTTTTTTCCGCCAATATGTCAGTACTATGGAGAATTTGTCCA
TCTTTATTTGGCAAAGTATGAGAGATGTGATGAAGGAACCTGATTTGCTT
TATGAAGTCAAGATCAAAGAGACGGATAGCAGTACTGTGGTTTATAGAGG
CGAACAGACCTGATCAATATTTCAAAAGTCGCATTGGTTAGAATTTGTAA
TATATTATTAAATGAATTCTCTTTCTGAATCTCAAACCCTTTGAGACTGT
TTTTAATCTGTAGAGATGTTAAGAATTAAGATTCATAAACGTTTATTAAT
TTCCAAGTCTTTCTCTACTGAATTAGTTATAACGTCTGAACGACAACAGT
TTCAAAAGCATACTTAAAGGCAAAGCAATCTCTTTTCACGAATTTCAATC
AATAGTCTGTTTTTATCATTATTTTGACAGACCACTGTTTGATTCATTTC
TTTCTTGCGAATGCTCTCTCAATACACAGTGGGTACAGGAATTCTCCTTC
TTTGTAACTGTTACTGCTTTGATGAACAAGCCAACATTTTTTATTGACGA
AAACACAATCTCTCTTCAACTTGGCATCACCTGTAAGGAAACAGTATGAG
TTTAATTCATTCGACTGGGATGTTATCCCTTTGATTTAGAGTATTTATAG
AGTAATATATATTTTTTTATTATCTGAACTTACGAGGAATATACTCTTTT
CTAATGGTTAATTTTAAGGAATGCGATGTAGATCTTAAAAAAATATTCAG
GTACATACAAATACATTGGAAATTTTTTGTCGTTTTTTTGCTGTTTTATT
TCGGAGTGGAGTTTTTCAAAGAAATTGTATCTATATTTCAGAGAAATGTT
GATTAATAAATTTTTTTTGATCGTTTCAGTGAATTAGAAAATATAAACAA
CAAAGAAGGATGGAGTTAGTGAAGGAACGTTTGAATCAAATGAAAGATGA
CTATGAAACTTCTAATGACAAGATCATCAAATTCGAAAGTGAACTCCAAG
AAAGTCGACGAAACTTAGAATCCGCTGTCAACGAGAAAGAATCACTTTTG
AGGCGTATTGAAGTTGTCGAATCACAAATCATCAATGCCAATAAGAATCG
TGAACGGATCGTTGATGATTTGAGGTATTTGGAACGCAATACAGATATCA
ATGAGGGGAAACGAAAATTCCTCGAAAATAAAGAACTCGAAGGTGACATA
AATATTTGTCGACTTGAAGAGAGATTATCTGAAGTTCGAGATAAGTTTTT
TGAAAACTCTATCAAATGTGAAGAGGGTGAACGCAGGCTAGCCGTACTCC
GATCCGATTTTGATAAATTACGGTCTAGACGTTTGGAGATGCAGGAGCAT
GCGGTTTACTTGCAGCGAGATTTGGATGAAAAGACATTGAAATCACGTGA
AATGGAGGATCACTTGGCAAACAATGGTGCCAAGGAATACGACGATGAAG
CCAATCTAAGGATTGTTGAGGATTTGCATCGTGAGGAATTGGATCGAGAA
GAAAGAGCCAGATTGAGAGTTCAAAAGCTACAACGCGTCATCGAAATGGT
TGAAGGTACATTTGTCAATTTTATTGAAGTGGGGAGGGTTACGGTCTCTC
TGCAAGTCTATAAAGTATATCATATTCCTTCATCAGATAGGCTAAATTCT
TACTAATATCAAGGAAAACCAATCTGGAGTATAGTTAAGAGAGTGAAAGG
TCTATAAATTAGAATGTGAAATTTATGGCGAGCATTGGTTCTTTTCCTAT
AGCCTGATCCCATAAAATAATCAAGCACCATAGTTGAATACGAATATCAT
AAAAGAAAATCTTTGAACGTCGAAATAGGGCTTAAAGTTGGTCACTCAAA
TCGACAAAGACTTGAAGTTGAACTTGACACTGCTTCTATTTTTAGATCAA
ATAGAAGAGGTTCGCAGGCGAAAAAAGAAGTTGCAAGTTGAATACAAAAA
CTCTTTGGACATTATCGTGAATTAAGGAGAGTAATCCACCATTTTTCTCT
TGTTGCCATGGGTGTGGAAGCCATAATGTTTATGAATTGGACAGTCTAAC
CGCAAATTGTTAAAAAGTCGAGATAATTACAAAAAGGCAATTTATTCTTC
CTGTGTTGATCAAGTATTCATTTTTATCAATATTGAAAACATTTTGTTAT
ATATTTATTTTTAAAAGAAGTTTTCATTTTTTAAAAGCAAAGTATTATAT
GCACTCTCGTTATTTTATTTGTTGCATAGGTAGTCAGTTTCTATTTTTAA
AGCTATATTGCACGTGTTTTTGACAAGGTTTAGTGAAGTGAAATGACAAT
AGCTTGACTTCAAATACAGGTTGATAATAATGATAATACGTTTTGTAGGA
AATAGTTTGATTTAAAAGCAAACAACTTTCAAAGACCAGCCTCCGATACT
CCTCTCGATCAAGCTCGTTTTTATGTGTTATAAAACAGCATATAATTATA
TCGTTTCATTCAGAAGAGAGGGACTTGGATTTTCGATGTAGGAAGTTTTA
ACTTTTTTTTCACTGTTCGTGTATATTATGTTCTCATGGAAAATATCTTG
AATATTTTTTTCTGAAGACTATTTCGTGACTAGACTTCTGTTTCACTTTT
TCTTTTACAGTATTTCATCTCTTAAATTTTCAGGCTTTCAATTATTAATA
TTTCATTATTTTCTCGAAAAGCCTTTTTCCTTCTAAATCTAAGGAAAATG
AAAAGTCAAAACAATCTCTATAGGATTTTATGAAGAAGTCTTTCTTAAAT
CTTTTGATTTCAATTTAAAGACTAGTGTAAATGGTCCCTTAGTCCAATAA
TACTTTCGTTTTCTCGATGGCATTTTAGAAGGATTTTGAAAATGATACCA
TTTTTTGTTATTACTTCAATTGCCATTGATACGAACTTTTCTTTCTCTTT
TTATTTCTTTGTAACCAGAAGAGGCTTCTTTAAACGGCAACACTTTAGAA
CATTAAATAAATTTAGAAAGCAGTTTATTTTGAAGAATATAATATTAATA
TAAGCAATGTATATTATGATAATAAATTTTCTTTTATATTGAAGTTGTTT
TTATTTTGCCATTGAGAAATTATTATTATTAGCATATTGTAAAGAAAATT
GAAGAATTTAAAGGAAAGTAGATCTTTGGCATGATTACTGTCAACTTTTG
AGTTGGAATCTCGAATAACTCGGTGATAAGTCTGTAATCAAACTTAATCT
GAAACTTTCTCCTAAAT Coding sequence (CDS) from alignment at sc0000091:248455..252421- >TCONS_00009276 ID=TCONS_00009276|Name=TCONS_00009276|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at sc0000091:248455..252421- (Clytia hemisphaerica)
ATCAAATAGAAGAGGTTCGCAGGCGAAAAAAGAAGTTGCAAGTTGAATAC
AAAAACTCTTTGGACATTATCGTGAATTAAATGGAGTTAGTGAAGGAACG
TTTGAATCAAATGAAAGATGACTATGAAACTTCTAATGACAAGATCATCA
AATTCGAAAGTGAACTCCAAGAAAGTCGACGAAACTTAGAATCCGCTGTC
AACGAGAAAGAATCACTTTTGAGGCGTATTGAAGTTGTCGAATCACAAAT
CATCAATGCCAATAAGAATCGTGAACGGATCGTTGATGATTTGAGGTATT
TGGAACGCAATACAGATATCAATGAGGGGAAACGAAAATTCCTCGAAAAT
AAAGAACTCGAAGGTGACATAAATATTTGTCGACTTGAAGAGAGATTATC
TGAAGTTCGAGATAAGTTTTTTGAAAACTCTATCAAATGTGAAGAGGGTG
AACGCAGGCTAGCCGTACTCCGATCCGATTTTGATAAATTACGGTCTAGA
CGTTTGGAGATGCAGGAGCATGCGGTTTACTTGCAGCGAGATTTGGATGA
AAAGACATTGAAATCACGTGAAATGGAGGATCACTTGGCAAACAATGGTG
CCAAGGAATACGACGATGAAGCCAATCTAAGGATTGTTGAGGATTTGCAT
CGTGAGGAATTGGATCGAGAAGAAAGAGCCAGATTGAGAGTTCAAAAGCT
ACAACGCGTCATCGAAATGGTTGAAGATCAAATAGAAGAGGTTCGCAGGC
GAAAAAAGAAGTTGCAAGTTGAATACAAAAACTCTTTGGACATTATCGTG
AATTAAATGGAGTTAGTGAAGGAACGTTTGAATCAAATGAAAGATGACTA
TGAAACTTCTAATGACAAGATCATCAAATTCGAAAGTGAACTCCAAGAAA
GTCGACGAAACTTAGAATCCGCTGTCAACGAGAAAGAATCACTTTTGAGG
CGTATTGAAGTTGTCGAATCACAAATCATCAATGCCAATAAGAATCGTGA
ACGGATCGTTGATGATTTGAGGTATTTGGAACGCAATACAGATATCAATG
AGGGGAAACGAAAATTCCTCGAAAATAAAGAACTCGAAGGTGACATAAAT
ATTTGTCGACTTGAAGAGAGATTATCTGAAGTTCGAGATAAGTTTTTTGA
AAACTCTATCAAATGTGAAGAGGGTGAACGCAGGCTAGCCGTACTCCGAT
CCGATTTTGATAAATTACGGTCTAGACGTTTGGAGATGCAGGAGCATGCG
GTTTACTTGCAGCGAGATTTGGATGAAAAGACATTGAAATCACGTGAAAT
GGAGGATCACTTGGCAAACAATGGTGCCAAGGAATACGACGATGAAGCCA
ATCTAAGGATTGTTGAGGATTTGCATCGTGAGGAATTGGATCGAGAAGAA
AGAGCCAGATTGAGAGTTCAAAAGCTACAACGCGTCATCGAAATGGTTGA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00009276-exon-sc0000091-1575043694:252192..252421 | TCONS_00009276-exon-sc0000091-1575043694:252192..252421 | Clytia hemisphaerica | exon |
| TCONS_00009276-exon-sc0000091-1575043694:251486..251787 | TCONS_00009276-exon-sc0000091-1575043694:251486..251787 | Clytia hemisphaerica | exon |
| TCONS_00009276-exon-sc0000091-1575043694:250117..250792 | TCONS_00009276-exon-sc0000091-1575043694:250117..250792 | Clytia hemisphaerica | exon |
| TCONS_00009276-exon-sc0000091-1575043694:248455..249776 | TCONS_00009276-exon-sc0000091-1575043694:248455..249776 | Clytia hemisphaerica | exon |
| TCONS_00009276-exon-sc0000091-1510915933:252192..252421 | TCONS_00009276-exon-sc0000091-1510915933:252192..252421 | Clytia hemisphaerica | exon |
| TCONS_00009276-exon-sc0000091-1510915933:251486..251787 | TCONS_00009276-exon-sc0000091-1510915933:251486..251787 | Clytia hemisphaerica | exon |
| TCONS_00009276-exon-sc0000091-1510915933:250117..250792 | TCONS_00009276-exon-sc0000091-1510915933:250117..250792 | Clytia hemisphaerica | exon |
| TCONS_00009276-exon-sc0000091-1510915933:248455..249776 | TCONS_00009276-exon-sc0000091-1510915933:248455..249776 | Clytia hemisphaerica | exon |
| TCONS_00009276-exon-sc0000091-1491911889:252192..252421 | TCONS_00009276-exon-sc0000091-1491911889:252192..252421 | Clytia hemisphaerica | exon |
| TCONS_00009276-exon-sc0000091-1491911889:251486..251787 | TCONS_00009276-exon-sc0000091-1491911889:251486..251787 | Clytia hemisphaerica | exon |
| TCONS_00009276-exon-sc0000091-1491911889:250117..250792 | TCONS_00009276-exon-sc0000091-1491911889:250117..250792 | Clytia hemisphaerica | exon |
| TCONS_00009276-exon-sc0000091-1491911889:248455..249776 | TCONS_00009276-exon-sc0000091-1491911889:248455..249776 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:248455..252421 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000533 | Tropomyosin |
Blast
BLAST of TCONS_00009276 vs. Swiss-Prot (Human)
Match: PTPS (6-pyruvoyl tetrahydrobiopterin synthase OS=Homo sapiens GN=PTS PE=1 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.144e-37 Identity = 65/133 (48.87%), Postives = 98/133 (73.68%), Query Frame = 3
Query: 108 LTKKFTFSAAHRLHSKELSDAENEKFYGKCNRV--HGHNYTVKVTLRGKVDPKLGYFINAHELKQYMITAIDNVLDHRNIDVDIPFFRQYVSTMENLSIFIWQSMRDVMKEPDLLYEVKIKETDSSTVVYRGE 500
++++ +FSA+HRL+SK LSD EN K +GKCN HGHNY V VT+ G++DP G +N +LK+YM AI LDH+N+D+D+P+F VST EN++++IW +++ V+ +LY+VK+ ETD++ VVY+GE
Sbjct: 14 VSRRISFSASHRLYSKFLSDEENLKLFGKCNNPNGHGHNYKVVVTVHGEIDPATGMVMNLADLKKYMEEAIMQPLDHKNLDMDVPYFADVVSTTENVAVYIWDNLQKVLP-VGVLYKVKVYETDNNIVVYKGE 145
The following BLAST results are available for this feature:
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