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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009278 ID=TCONS_00009278|Name=TCONS_00009278|organism=Clytia hemisphaerica|type=transcript|length=3141bpRun BLAST on NCBI protein sequence of TCONS_00009278-protein >TCONS_00009278-protein ID=TCONS_00009278-protein|Name=TCONS_00009278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp MKLQPLHXYLINPFGLLFNEITASSLVKCDASGNVVDEGSTTLGLNKAGFRun BLAST on NCBI transcript from alignment at sc0000091:261611..272325- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009278 ID=TCONS_00009278|Name=TCONS_00009278|organism=Clytia hemisphaerica|type=transcript|length=10715bp|location=Sequence derived from alignment at sc0000091:261611..272325- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:261611..272325- >TCONS_00009278 ID=TCONS_00009278|Name=TCONS_00009278|organism=Clytia hemisphaerica|type=CDS|length=1338bp|location=Sequence derived from alignment at sc0000091:261611..272325- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00009278 vs. Swiss-Prot (Human)
Match: ADDA (Alpha-adducin OS=Homo sapiens GN=ADD1 PE=1 SV=2) HSP 1 Score: 231.876 bits (590), Expect = 5.666e-64 Identity = 115/241 (47.72%), Postives = 163/241 (67.63%), Query Frame = 1
Query: 946 YLINPFGLLFNEITASSLVKCDASGNVVDEGSTTLGLNKAGFVLHSTIHEFRPDLNCIIHVHTPDVIAVSSMKCGLLRISQESLVVGNVSYHDYKGILINEEERESIQNDLGTENKIMILRNHGAVICGASIESAFHDLLNFMDACETQVKAIPI--GLDNLNIVSEEAFQQVQDIQRNNCKINVTAEGK---PQMSLADLTFEAYMRWMDSQGYRTGYAYRVPDLFTSPQKK---KIPAS 1644
+LI PFGLL++E+TASSLVK + G++VD GST LG+N+AGF LHS I+ RPD+ C++H+HTP AVS+MKCGLL IS E+L +G V+YHDY GIL++EEE+ IQ +LG ++K++ILRNHG V G S+E AF+ + N + ACE QV+ + G DNL +++ E ++ ++ + EG P+ + + FEA MR +D+ GYRTGY YR P L +K ++PAS
Sbjct: 180 FLIVPFGLLYSEVTASSLVKINLQGDIVDRGSTNLGVNQAGFTLHSAIYAARPDVKCVVHIHTPAGAAVSAMKCGLLPISPEALSLGEVAYHDYHGILVDEEEKVLIQKNLGPKSKVLILRNHGLVSVGESVEEAFYYIHNLVVACEIQVRTLASAGGPDNLVLLNPEKYK-----AKSRSPGSPVGEGTGSPPKWQIGEQEFEALMRMLDNLGYRTGYPYRYPALREKSKKYSDVEVPAS 415 HSP 2 Score: 107.071 bits (266), Expect = 1.571e-23 Identity = 60/156 (38.46%), Postives = 93/156 (59.62%), Query Frame = 3
Query: 495 EILRDIRGLKLRQRVSLVLGDELLKDELEQTIRNSTVNG--VTRADTIRTFQDFL---IPQAQPNFVNIXXXXXXXXXXMVVLPVNDIKGNGTTSYNINERQLRSKLAAVYRLVDLLGWSESIYNHISVRLSNESNEYLINPFGLLFNEITASSLI 947
++ +D ++ ++RVS++L +ELE I+ G T ++ DF+ +P P G + GMV PVND++G+ + +Y+ E+ LR KLAA YRL DL GWS+ IYNHI+ R+++E +LI PFGLL++E+TASSL+
Sbjct: 44 DLRQDFNMMEQKKRVSMILQSPAFCEELESMIQEQFKKGKNPTGLLALQQIADFMTTNVPNVYPAAPQGGMAALNMSLGMVT-PVNDLRGSDSIAYDKGEKLLRCKLAAFYRLADLFGWSQLIYNHITTRVNSEQEHFLIVPFGLLYSEVTASSLV 198 The following BLAST results are available for this feature:
BLAST of TCONS_00009278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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