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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009291 ID=TCONS_00009291|Name=TCONS_00009291|organism=Clytia hemisphaerica|type=transcript|length=1359bp
ATTTATTAATTATTagtatgaaatttggtctgtaGCAACGAATAAATTCT
CTATGGATGTATAAAGATTGTTGTAGCCTTGTAGCTCAGTACGGTTTGAA
GGAACAATTTGCTTTCACTTGTTTTTAAGTGAAACATTGGTCCCAGAAAC
TTTAATAGTTTAAGTCAATAAGTTCCTACTCAAACATTTAGGAAAGAACC
CAGAGTAAACTTCAATCATCTTGAAAAGGGAAATCGTTAGAATGTTATGT
TGGTTTTAAGCATAGAGTTGTAACATCGTAAAATTGAAAGAAGTGATTTC
TTATCAATCAGCTGAGAAGCATCACGTTTCAAAGGAAAACATTCGTTCTT
TTGTTATACGAGACTGGGTACTAAATTGAgcaaatacaataaaaattgaa
atgtcGAGTAAAAAGTCTTCACAATCCAGTAGTGATCACACGAGTGATGA
GACGGTCGCTTTAATTAACTCTGAAAACAAAATGTCTACAAAAATCGTAC
CAGTTGGTAGTGAAccatctaaaatggtagacCAAGATGCAGGTCAAGGA
GCTGGTTTACAGCGTCAAATCGGACTCATTGGAACAATAGCTATTCTCGT
TGGAACAATAATTGGGAGTGGAATTTTCGCTTCACCTGCTTCCGTATCAA
GTCAAATGaatagcccaggcggctctttagtCGTATGGGCGGGATGTGGC
GTTATTGCTATGTTAGCCGCCTTATCTTGGATGGAACTTGGATGTATGTT
TCCAAATAAGGGAGGCGGTGAATACGCCTACATTTACGCCGCTTTTGGGC
CGTTACCCGCCTTCCTGTTTGCGTACGTTAACGTTTTGGTGACCAGGCCC
GCTTCGTTGACCATCATCTCCTTAACTTGTGGCGATTATCTTATGAGAGC
CTTCAAtgttcaaaatcatgaaaattttcaGTATAATAAACTGGTAGCTG
CGCTGTTGTTAGcggTGATTCTGATCGTGAATTGTTTGAGTGTGAAATGG
GCCACCCTGATGCAAGTCTTCTTTACGGCAGCCAAAATGATCGCTATCGT
CATGCTTATCATTACAGGATTCGTTCGTCTCGGTCAAGGTCATGACGAGC
ATTTTAAAAACGCCTTCAACGGGACAAATACCGGTATATCAGACATCGGT
TACGCGTTTTACGGTGGTCTATGGGCTTACGATGGTTGGAATAATTTGAA
TTACGTCAccgaagaattgaaaaatcctATCCGTGATTTACCGTTAGCCA
TTATGATTGGTATTCCCTTGGTAACGGGTTGCTATGTGATGGTGAATGTA
GCATATTTGACGGTGATGTCCGCTTCACAGATTGCAACTGAAAAAGCAGT
AGCTGTGGT Run BLAST on NCBI transcript from alignment at sc0000091:552803..559905- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009291 ID=TCONS_00009291|Name=TCONS_00009291|organism=Clytia hemisphaerica|type=transcript|length=7103bp|location=Sequence derived from alignment at sc0000091:552803..559905- (Clytia hemisphaerica)
ATTTATTAATTATTAGTATGAAATTTGGTCTGTAGCAACGAATAAATTCT
CTATGGATGTATAAAGATTGTTGTAGCCTTGTAGCTCAGTACGGTTTGAA
GGAACAATTTGCTTTCACTTGTTTTTAAGTGAAACATTGGTCCCAGAAAC
TTTAATAGTTTAAGTCAATAAGTTCCTACTCAAACATTTAGGAAAGAACC
CAGAGTAAACTTCAATCATCTTGAAAAGGGAAATCGTTAGAATGTTATGT
TGGTTTTAAGCATAGAGTTGTAACATCGTAAAATTGAAAGAAGTGATTTC
TTATCAATCAGCTGAGAAGCATCACGTTTCAAAGGAAAACATTCGTTCTT
TTGTTATACGAGACTGGGTACTAAATTGAGCAAATACAATAAAAATTGAA
ATGTCGAGTAAAAAGTCTTCACAATCCAGTAGTGATCACACGAGTGATGA
GACGGTCGCTTTAATTAACTCTGAAAACAAAATGTCTACAAAAATCGTAC
CAGTTGGTAGTGAACCATCTAAAATGGTAGACCAAGATGCAGGTCAAGGA
GCTGGTTTACAGCGTCAAATCGGACTCATTGGAACAATAGCTATTCTCGT
TGGAACAATAATTGGGAGTGGAATTTTCGCTTCACCTGCTTCCGTATCAA
GTCAAATGAATAGCCCAGGCGGCTCTTTAGTCGTATGGGCGGGATGTGGC
GTTATTGCTATGTTAGCCGCCTTATCTTGGATGGAACTTGGATGTATGTT
TCCAAATAAGGGAGGCGGTGAATACGCCTACATTTACGCCGCTTTTGGGC
CGTTACCCGCCTTCCTGTTTGCGTACGTTAACGTTTTGGTGACCAGGCCC
GCTTCGTTGACCATCATCTCCTTAACTTGTGGCGATTATCTTATGAGAGC
CTTCAATGTTCAAAATCATGAAAATTTTCAGTATAATAAACTGGTAGCTG
CGCTGTTGTTAGGTTAGTCATAACAAGTGTATTTTTCATTTTCGAAGCTT
TTTCACTACCTGGTAGGAGAAATTTAACAAACTTAACAAGGCTTAAAAAA
AGTTTCTTAATTTCCAGTTTTCAAGTTTCCACGTATCTTATCTGGCGGTG
ATTTGCGTCAGTTTGTTAGTTACAGATTCAGTATCAGTCTTTTATAAAAT
AAAATTGTTTTCAAGGACAAACACGACTGTCTGCTAAACCATTCATAATC
TCTGATTGAAGACATTTTGTTTATTCCGACCTAATACGTAAATCTTTTGA
GGATTCCTCCTGTAGGTTGTTGTCACATGTTCAAATTGATTATGATTTTC
CTTGAATGAAATTCCTTTTTGTTTATGTCTTGAGATTGTCATCGTTTGAA
CGTTCATTCGACGTCCGTGTGTGTTATTGGGCCATTTTCAAGTAATTTGT
GAGCGTCATTGAGGTTTTGAGGGAAATAGTAACTTGAATGTCGAGAGTTT
GTTTATTCAACTGAGTAGTGGGAGGCCTTAAGTGATCTGAAATTACTTAA
AGTTGGAGGATATTAGGTCATTAAGCTAGACAGCTCAAAATTCTAAAAGA
CGCTTGAAATCCCTCATAGACTATAATGCTACTATATAGTTTCGAACATG
TCTATTGTTTCTAAATTCCAAATTACACGCTTTTTCAACAATACACGTTT
TTTTTTTATAAGGAACACGTTTATAAGGAACTCGAGGCTGAAAATGGTTC
AAAAAATAAGGAATTGTTAAGGAACTGCTCAGGCTGAGAATAAGTGGATT
TGAAAATAATGTACCTTATTGGGATTAATTTGACCAAATTTGGATCTTTC
AAGGGGCAAAAAGTTCAAAATTTCCTATGTAGTAAGGAACTCGATAAGGA
ACTTTGAGACTGAAAATCTCTGTAAAAATAAGGAACTCCAGGCTCAGAGC
AAAGTTAAGGTTCCTTATTAAAAAAAAACGTGTAGCATGTAAATTTTGGC
TGAATCTTGGCTGTTTTTATTTCAGTCTGGTTTACTCGATGCTTACTTTG
CTCCCTCATTGAGGAGCTTCAAGTCGACATTTTCGTAGCCATTTCTAAAA
GCTGAGAATGGAGTTCTTTAATTTGTTTTTGTTGAAATTGAGTCTTCTGT
TCTTATAGAATTATTCTTACAATTCTGTTTCTTCTTAGTGCCAAAAGTGC
CCAATGATATCTCAGAGTTTTTGATAAGGATGAAACTTATGTAAAAGAAA
AGCTATGTCTTACTACCTAAAATATTCTACCGGAAGAATTTTACCGGAAA
ATAAGATCAGGAAAAAAAATTAAGGTTGGAGCGCTAAAATTAAGACATCC
AAATCTCAAAAGATGTTTACTGGTTCTTAAAAATGAATATTTTTCAAACA
ATTCAATAATTAAGTAATATGACTACACATGACATTGATCTTGAGAAATT
GACTGAAGTCTCTGAACTTTGGTCGAGTGTCTTTAAACAGTTTAAGCGGT
CCACCTTGGTGATTTCCAGTGAAAGTTTGAAATGATCTCTCCTTCCTGCA
TTCTTAAAAAAGCAACGACTGAAGTATTCTCACAGATTCAAAACAAGCAA
ATCAATCATGAAATTTTAAAAATACTCATTTAACTGTTTAAGTTCACACT
GAAGGAGTTCCAGTGTTTAATTTCATTCAAGTGTATTTTTTTGCTTTTAC
ACAAAAACATCACCATTCACTCTGTTTTGTTTCGTGTGATGTCATGGTGA
ATAGCTACAGTTACCAGAGGTTACAATCTTACTTTTAGGTGGGATTCTTG
GACTCGTCAGACCCTCTTAATAAGAACAAACTATATAAGAACAAGGGAGG
ATATTAAGAACAAGTTAAGAACATTTCAAGACTTTGTGGATTCTGAAACA
CCCGATTTCTTTGGAAATTACACCAAAATACTCACAAAATGCTAAACCAC
GTCGTTGTATTTCGCTACAGCAAGCTTGCAATAGGCTTAATGTCTATGTG
AATCTTTCCAAACCACTCTTCTGCGGAAATTTATATTTTTTATAAGAACT
TTTTATAAGCACTATTCCCGCGTTCCTGTGTCCAAGGAAAGATAGAGACG
CTTGCTAGTCTAACAAAATGCTGAAAATATGAACATTTAAAAGAACATTT
TAAGGCTTAAAACTTTTTGATGTCATCAATCGATTCTCATTTCAACTGTT
ATTACCATGTGGAAACTGTGTGGAAACTCGAGAAGAATCTCATTCATAAT
TTGTACTTTCGTTGACCTTCCAAAGTCACAATGTGACAAACATTTAGAAC
TCAAATATATGGCCTTCATGTTTTTGAATATCAAATGACAAAATAGACAA
AACTCAATCAATGTTGTCCCATCATGACAAAGTTGTAAAGTTGTTGATAG
CCCAATGTTGTCAAAAATGTGACCTATGTACTGTCAATCAAACTTGAACA
TTACTAGAACTACCTCTTAAAATATATGTTACTGAAGTAATATGCATTAC
ACAGGCCCGACGGAACAACCGTTAAAGTGGGGAGACTGTAGGCTCAAAGC
GAGATAAAATTCCTTAGGAATTTGAGGAGGCTGAAGTCTCCCCAGTCTCC
CCGCTTCCACTTGGCCTGTACAAGAAGTAAAGTTTGAAGCATATAAGGTG
AAATATTCAAAGTTCAGTCATTTAGAAATAAGTTTTAAAATCCCGTCCAA
AAATGTATTAAACTTCTTTGACACAGTTTTACGTATAACATTTTTTTTTT
AATGAATCTGCTCAGTCTCGCCAGGGTAAATTTTGTAGACGTTCTTATTA
CTCTTATCTAATTGGCTATTATATTTTTTTATAAGAACAAACTTTATAAG
ACCATAAGGCTTCGATCACCTAAATAAAATATTAAGAACAAACTTTATAA
GACCATAAGGCTTCGATCACCTAAATAAAATATTAAGAACAAGTTAAGAA
CAATTTAAAGATTTGCAGACTCTGAAAATAAGAACACGTTAAGAACAGTT
TTAGGTTTAAAACTAAGTTTAACTAAGTTAAGAACATCCGAAGGCTTTAA
AAAATTTGGATATTCTTATAAAAAAAAAGTTATAAGAATCCAGATTTCGT
AATCCTCGAAAAATAAAGAAAGTTTCCATGTGAAGTATCAGATGGATTCG
ATAATTCTATATAACTCCTTCTTTATTTGACAGGTGAACAATTTTCACAC
CTTCATGTCAATCCCTTTTCTTCATTAAAAACTTTTACTTATTAAAATAG
CGAATGAAATTTCCGCTTGAATTTCATCAGCTCGCTACTGACCGGATTTC
ACTCTAATTTTCATCATAATCCGGCTACTATTTGGACTTTTTCTAAAATT
AAAGGTCCATCAAAGATTTTCAATTTTTCACCATATAGATTTTTTTCAGC
TTTTCACCGTAAATGTTATGGTAAATCCTCATTAAACCGCCATAGGAAAT
ACTAACTAACAAAAGAGAAATAGATTTTCTATGCCACTAATTGTTCTGCA
AGTAATACAACTTTTAGTTTTGCCCACTCTGTACAGTGGAATCTCGAACC
TCTATGACTGGAATATCTCCCATATCTCGAACAAGTTTTATGATCCCTGC
TGGTAGCAATGCCTTATAAACCTATAAAAGGGGCCCCCTTTAAATGCCAA
GTTTACATTTGCCCCTATAAATAAAAAACAAACAGAAAATCCTGGCCATA
GTTCAGCTCGATAGTTCTATGAATTTTGATGATATTTTTAAATATACTTG
ATTGTTTTGTTGTTTCATATAATTTTTGAAAACGAAATGTAAAATTTTCA
AGATGGCAGAAATCTCTAATCTTCTTCACTAGATTCAGCGCCAAAGAAAA
CTATAAAGTTCAGCTAGAAGAAAACTCTTATATATAGTATCATAGGATAT
GACACTACGTTGAAAATGGTTCTTAAAATCATCTCAGGAATTAGATCTCA
CTGTGTCTGGGGTTGTCTTAAACAACGAAACCGCAGAAAGTTCATATCAC
TTGTTGTTTATGATGTCATTTTTCATCATATACATTTCAAAAATGTTCTG
CTTTCAAAGTTTTTACTTTTCGTGTGATCTGGCTTAACGTGTCGTTTTAA
GATGGTAGTTTTAGCTGAAGTAAACTCCCATAAAAACTCTGTATACTTGA
AATTTTGATACGTTCCATTTTTTGGAAAACCTTTTTACAAAAGATGGAGA
TTTCGTACAAGAGAGCAAGTTTTTCGTCTCAATCATCCGGTAGCAGTCAG
GAAGAATTCGTTCAAATAAGACCGAGTCATCGAGACAACGAAAACGCCGG
ATTTCTTATCCAACCGAATCGGAAAAATGGATTGAAAGTGCATTTAACTT
TATTCCATTGCTTGAATCTACTGTTATGTTTGGTCCTTAGTCCAAGTACT
TTTGCGTCATGTCTTATTTACAAGCATGTTCAAGACCCTGGAATAATTTT
AGTATTATGGACAACTTGCGGTGCTTTTGTATTATGTTATGCTTTAGTAT
GGGTTGAACTTGGTACGATGTTCCCTCGCGAGGCAGGTGGAGAATACACG
TACCTCAAAAACGCATTCGGACCTTTACCCGCGTTTGTATATAGCATGTT
GCGCGTTTTGATTCTGCAACCCGCGAGATTGACTTTGATCTGTTTGGCGA
GTGGAGATTTTCTATTGAGAACGTTTTCTGCTCAAATTGAGAATGTTGAA
ATTGCTCAAAAATTTATCGCTGCTGCATTCATTGGTTTGTTTTCAAAGTC
TTTTAATTTTGATGTTTGAAACATCACCCTCTATTTCATCCAGTCTAGGT
TTCAAAGCACCAGGTTATATTGATATCAAAAGTTTGAAGCTACACGTTTA
TTTTAGTTTTCGAACTAAATGTGTGTGGTCTTAAATTTAGATCTTGTCAC
AAGGTTGAATAGGGTGTTTTATGACCGTCTGATACCTCTGACCTCTTTGA
AATATATATCCTTACTTGTATCAAATTCAGACTAGCCTGGTTTTATCCTT
TTATCTCTGATATATGTATTTTCGTTCTGCAAAGAAATTAACTGTCTATC
TATTTGTGCGAAGTGTCAAATATTTGTTAAGTCTTTAAACTAGACAAATA
AGTTAAAGTTCTAGTTGGTAAGAGAGTGCTGGTTTGGGTGGTCTCATTCC
CTCGCGCCGACAATTTTTCTTCCTTACACTTACCTTATTCATACGCTTAC
TTTTCCCGCGTGATATTGTTCCAGTCCGACTGACGTGCCAGTCGATGCCA
AAACGATGTTTTTCTTCTTTTTTTTTCAGCGGTGATTCTGATCGTGAATT
GTTTGAGTGTGAAATGGGCCACCCTGATGCAAGTCTTCTTTACGGCAGCC
AAAATGATCGCTATCGTCATGCTTATCATTACAGGATTCGTTCGTCTCGG
TCAAGGTAGGTTTTCATTTGACTTGAAGCTTATTTACGCTCTTTACGATA
GAATGCTTTCCTACTATGCTATCTGAAATCTAATCATAAAAGTTTATAAA
AGACTAACTCTTTGTCGATATTGACGTTGAAAGCCTTGGCGGAAGAAAAT
GAATGATCTCCATAGTTGGGAATGTGGACAGAAGCCTTTCAATGTTTGTT
TTTTTTCACCACTATTTTCACTAGAATTTCAACCTTTTATGATATATGGG
CGATGTTTTGGTCCATTTAGATATTGAAAGCCTGCGTGGATGGCTGGGGT
AGGTATTGATAAAAAACGACCCTTGTAAAAAGACACTACACCTTTAAAGC
TGATTCACCGTCCCTGGCTAGTCATATCACATAATTTATTGAGGGCGAAA
ATAATAATTTAGTATCACTTTTCTCCACCTTGTTGTCTTTTGAACAATAT
ATTTGACCGATTCTGTCTCTGTCTTTTTTCAGGTCATGACGAGCATTTTA
AAAACGCCTTCAACGGGACAAATACCGGTATATCAGACATCGGTTACGCG
TTTTACGGTGGTCTATGGGCTTACGATGGTTGGAATAATTTGAATTACGT
CACCGAAGAATTGAAAAATCCTATCCGTGATTTACCGTTAGCCATTATGA
TTGGTATTCCCTTGGTAACGGGTTGCTATGTGATGGTGAATGTAGCATAT
TTGACGGTGATGTCCGCTTCACAGATTGCAACTGAAAAAGCAGTAGCTGT
GGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00009291-exon-sc0000091-1575043694:558944..559905 | TCONS_00009291-exon-sc0000091-1575043694:558944..559905 | Clytia hemisphaerica | exon |
| TCONS_00009291-exon-sc0000091-1575043694:553551..553676 | TCONS_00009291-exon-sc0000091-1575043694:553551..553676 | Clytia hemisphaerica | exon |
| TCONS_00009291-exon-sc0000091-1575043694:552803..553073 | TCONS_00009291-exon-sc0000091-1575043694:552803..553073 | Clytia hemisphaerica | exon |
| TCONS_00009291-exon-sc0000091-1510915933:558944..559905 | TCONS_00009291-exon-sc0000091-1510915933:558944..559905 | Clytia hemisphaerica | exon |
| TCONS_00009291-exon-sc0000091-1510915933:553551..553676 | TCONS_00009291-exon-sc0000091-1510915933:553551..553676 | Clytia hemisphaerica | exon |
| TCONS_00009291-exon-sc0000091-1510915933:552803..553073 | TCONS_00009291-exon-sc0000091-1510915933:552803..553073 | Clytia hemisphaerica | exon |
| TCONS_00009291-exon-sc0000091-1491911889:558944..559905 | TCONS_00009291-exon-sc0000091-1491911889:558944..559905 | Clytia hemisphaerica | exon |
| TCONS_00009291-exon-sc0000091-1491911889:553551..553676 | TCONS_00009291-exon-sc0000091-1491911889:553551..553676 | Clytia hemisphaerica | exon |
| TCONS_00009291-exon-sc0000091-1491911889:552803..553073 | TCONS_00009291-exon-sc0000091-1491911889:552803..553073 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:552803..559905 - |
Blast
BLAST of TCONS_00009291 vs. Swiss-Prot (Human)
Match: BAT1 (b(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 7.567e-74 Identity = 135/282 (47.87%), Postives = 189/282 (67.02%), Query Frame = 2
Query: 512 EPSKMVDQDAGQGAGLQRQIGLIGTIAILVGTIIGSGIFASPASVSSQMNSPGGSLVVWAGCGVIAMLAALSWMELGCMFPNKGGGEYAYIYXXXXXXXXXXXXYVNVLVTRPASLTIISLTCGDYLMRAFNVQNHENFQYNKXXXXXXXXXXXXXNCLSVKWATLMQVFFTAAKMIAIVMLIITGFVRLGQGHDEHFKNAFNGTNTGISDIGYAFYGGLWAYDGWNNLNYVTEELKNPIRDLPLAIMIGIPLVTGCYVMVNVAYLTVMSASQIATEKAVAV 1357
E K + + LQ+++GLI I+I+VGTIIGSGIF SP SV S + G L++WA CGV+A L AL + ELG M K GGEY Y+ A+GP+PA+LF++ +++V +P S II L+ +Y+ F V K +AA + I VN LSV+ + +Q FTAAK++ + ++II+G V L QG+ ++F N+F G + I AFY GLWAYDGWN LNY+TEEL+NP R+LPLAI+IGIPLVT CY+++NV+Y TVM+A+++ +AVAV
Sbjct: 11 EDEKSIQSQEPKTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLGALCFAELGTMI-TKSGGEYPYLMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPPQIVVKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQSQAVAV 291
The following BLAST results are available for this feature:
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