TCONS_00009294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009294
Unique NameTCONS_00009294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009294 ID=TCONS_00009294|Name=TCONS_00009294|organism=Clytia hemisphaerica|type=transcript|length=707bp
GGCAACATTGGTTGCGTGTTTTCTATAAAAAGTGGCATTAGAAGTAATAT
TTACACTGCTAGATTTAACCAGTGTAATTCATTTATAATCAAgtgaataa
aaaagaaaatggcgGCAGAAGATTCGAACCGATTATTGAGCAatggtgaa
aatgaaaaagaactcAGTGAAGTGAATGGAATTGAGGCAAAAGTGATGGG
TACCGAAAAAGATGAATTATTCGCAAAAATCGAGGAGGACTCTGGGACTG
GATTGAAACGACAAGTCAATTTGTTGGGCGGTATTTGTCTACTGGTTGGA
ACGATTATCGGATCAGGTATCTTTGCATCACCGACAACCATTGCTGAACG
TGTACAAAGCCCTGGAGCCACTCTTCTTGTATGGACTGGATGTGGATTAA
TCGCTATGTTTGGTGCATTATGTTACGTTGAGCTTGGAACAATGTACCCA
AACGAATCTGGTGGTGAATACATCTACATTCAAAAAGCGTTCGGTGATTT
GCCAGCTTTCTTGTTAGCTTTCACCAGTGTTTCCATCATCAAGCCCTCCT
CAATGGCACTGATCGCTCTTACTTGTGGTGATTACCTGATGGTGGCCATA
TCTAATCTAAATCCccaccaaattttacaaaattgatcaatcgccaaatt
aaatcctcgccaaaaatcgcattttggccaatcgccaaattaaatccacg
ccaaaat
Run BLAST on NCBI

protein sequence of TCONS_00009294-protein

>TCONS_00009294-protein ID=TCONS_00009294-protein|Name=TCONS_00009294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MAAEDSNRLLSNGENEKELSEVNGIEAKVMGTEKDELFAKIEEDSGTGLK
RQVNLLGGICLLVGTIIGSGIFASPTTIAERVQSPGATLLVWTGCGLIAM
FGALCYVELGTMYPNESGGEYIYIQKAFGDLPAFLLAFTSVSIIKPSSMA
LIALTCGDYLMVAISNLNPHQILQN
Run BLAST on NCBI

transcript from alignment at sc0000091:560387..561269-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009294 ID=TCONS_00009294|Name=TCONS_00009294|organism=Clytia hemisphaerica|type=transcript|length=883bp|location=Sequence derived from alignment at sc0000091:560387..561269- (Clytia hemisphaerica)
GGCAACATTGGTTGCGTGTTTTCTATAAAAAGTGGCATTAGAAGTAATAT
TTACACTGCTAGATTTAACCAGTGTAATTCATTTATAATCAAGTGAATAA
AAAAGAAAATGGCGGCAGAAGATTCGAACCGATTATTGAGCAATGGTGAA
AATGAAAAAGAACTCAGTGAAGTGAATGGAATTGAGGCAAAAGTGATGGG
TACCGAAAAAGATGAATTATTCGCAAAAATCGAGGAGGACTCTGGGACTG
GATTGAAACGACAAGTCAATTTGTTGGGCGGTATTTGTCTACTGGTTGGA
ACGATTATCGGATCAGGTATATCCCGAAATCAAAACCCTTTTCCCCTTTT
TTTCAAAATCGATTTTCTTTTTTTACTGAATTTACTTGAAAATGTCCCCA
GTGTACTTGTTTCTTTTTTATTCCATCGCATTAACTCCTTTCTGCGGCCA
CCTTTCGATAAAAACCACCCTCTCTTCCGCCCGTCCAATTAGGTATCTTT
GCATCACCGACAACCATTGCTGAACGTGTACAAAGCCCTGGAGCCACTCT
TCTTGTATGGACTGGATGTGGATTAATCGCTATGTTTGGTGCATTATGTT
ACGTTGAGCTTGGAACAATGTACCCAAACGAATCTGGTGGTGAATACATC
TACATTCAAAAAGCGTTCGGTGATTTGCCAGCTTTCTTGTTAGCTTTCAC
CAGTGTTTCCATCATCAAGCCCTCCTCAATGGCACTGATCGCTCTTACTT
GTGGTGATTACCTGATGGTGGCCATATCTAATCTAAATCCCCACCAAATT
TTACAAAATTGATCAATCGCCAAATTAAATCCTCGCCAAAAATCGCATTT
TGGCCAATCGCCAAATTAAATCCACGCCAAAAT

Coding sequence (CDS) from alignment at sc0000091:560387..561269-

>TCONS_00009294 ID=TCONS_00009294|Name=TCONS_00009294|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at sc0000091:560387..561269- (Clytia hemisphaerica)
GTATCTTTGCATCACCGACAACCATTGCTGAACGTGTACAAAGCCCTGGA
GCCACTCTTCTTGTATGGACTGGATGTGGATTAATCGCTATGTTTGGTGC
ATTATGTTACGTTGAGCTTGGAACAATGTACCCAAACGAATCTGGTGGTG
AATACATCTACATTCAAAAAGCGTTCGGTGATTTGCCAGCTTTCTTGTTA
GCTTTCACCAGTGTTTCCATCATCAAGCCCTCCTCAATGGCACTGATCGC
TCTTACTTGTGGTGATTACCTGATGGTGGCCATATCTAATCTAAATCCCC
ACCAAATTTTACAAAATTGAATGGCGGCAGAAGATTCGAACCGATTATTG
AGCAATGGTGAAAATGAAAAAGAACTCAGTGAAGTGAATGGAATTGAGGC
AAAAGTGATGGGTACCGAAAAAGATGAATTATTCGCAAAAATCGAGGAGG
ACTCTGGGACTGGATTGAAACGACAAGTCAATTTGTTGGGCGGTATTTGT
CTACTGGTTGGAACGATTATCGGATCAGGTATCTTTGCATCACCGACAAC
CATTGCTGAACGTGTACAAAGCCCTGGAGCCACTCTTCTTGTATGGACTG
GATGTGGATTAATCGCTATGTTTGGTGCATTATGTTACGTTGAGCTTGGA
ACAATGTACCCAAACGAATCTGGTGGTGAATACATCTACATTCAAAAAGC
GTTCGGTGATTTGCCAGCTTTCTTGTTAGCTTTCACCAGTGTTTCCATCA
TCAAGCCCTCCTCAATGGCACTGATCGCTCTTACTTGTGGTGATTACCTG
ATGGTGGCCATATCTAATCTAAATCCCCACCAAATTTTACAAAATTGAAT
GGCGGCAGAAGATTCGAACCGATTATTGAGCAATGGTGAAAATGAAAAAG
AACTCAGTGAAGTGAATGGAATTGAGGCAAAAGTGATGGGTACCGAAAAA
GATGAATTATTCGCAAAAATCGAGGAGGACTCTGGGACTGGATTGAAACG
ACAAGTCAATTTGTTGGGCGGTATTTGTCTACTGGTTGGAACGATTATCG
GATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005197XLOC_005197Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009294-proteinTCONS_00009294-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009294-exon-sc0000091-1575043694:560954..561269TCONS_00009294-exon-sc0000091-1575043694:560954..561269Clytia hemisphaericaexon
TCONS_00009294-exon-sc0000091-1575043694:560387..560777TCONS_00009294-exon-sc0000091-1575043694:560387..560777Clytia hemisphaericaexon
TCONS_00009294-exon-sc0000091-1510915933:560954..561269TCONS_00009294-exon-sc0000091-1510915933:560954..561269Clytia hemisphaericaexon
TCONS_00009294-exon-sc0000091-1510915933:560387..560777TCONS_00009294-exon-sc0000091-1510915933:560387..560777Clytia hemisphaericaexon
TCONS_00009294-exon-sc0000091-1491911889:560954..561269TCONS_00009294-exon-sc0000091-1491911889:560954..561269Clytia hemisphaericaexon
TCONS_00009294-exon-sc0000091-1491911889:560387..560777TCONS_00009294-exon-sc0000091-1491911889:560387..560777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:560387..561269 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.99473	1.04337	1.6939	1.11175	430.113	350.357	201.866	197.902	49.7195	96.5199	65.3194	29.1317	22.1264	24.0609	5.01304	5.75236	12.6213	13.5942	12.5712	8.63783	12.6738	11.4901	13.0693	14.3494	13.1589	11.6087	30.5753	28.3565	17.0228	25.4573
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002293AA/rel_permease1
Vocabulary: Molecular Function
TermDefinition
GO:0015171amino acid transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0003333amino acid transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0003333 amino acid transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0015171 amino acid transmembrane transporter activity
Blast
[Close]
BLAST of TCONS_00009294 vs. Swiss-Prot (Human)
Match: BAT1 (b(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.645e-31
Identity = 55/128 (42.97%), Postives = 89/128 (69.53%), Query Frame = 1 
Query:  205 EKDELFAKIEEDSGTGLKRQVNLLGGICLLVGTIIGSGIFASPTTIAERVQSPGATLLVWTGCGLIAMFGALCYVELGTMYPNESGGEYIYIQKAFGDLPAFLLAFTSVSIIKPSSMALIALTCGDYL 588
             +DE   + +E   T L++++ L+ GI ++VGTIIGSGIF SP ++    ++ G  L++W  CG++A  GALC+ ELGTM   +SGGEY Y+ +A+G +PA+L ++ S+ +IKP+S A+I L+  +Y+
Sbjct:   10 REDEKSIQSQEPKTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLGALCFAELGTMI-TKSGGEYPYLMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYV 136
The following BLAST results are available for this feature:
BLAST of TCONS_00009294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BAT15.645e-3142.97b(0,+)-type amino acid transporter 1 OS=Homo sapie... [more]
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