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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009295 ID=TCONS_00009295|Name=TCONS_00009295|organism=Clytia hemisphaerica|type=transcript|length=4742bpRun BLAST on NCBI protein sequence of TCONS_00009295-protein >TCONS_00009295-protein ID=TCONS_00009295-protein|Name=TCONS_00009295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1023bp MVIHITLDIGCKQSGQLWTRKVTPEVEDGLVLNIKNVSSNGFTTRHIRFQRun BLAST on NCBI transcript from alignment at sc0000091:578616..616564- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009295 ID=TCONS_00009295|Name=TCONS_00009295|organism=Clytia hemisphaerica|type=transcript|length=37949bp|location=Sequence derived from alignment at sc0000091:578616..616564- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:578616..616564- >TCONS_00009295 ID=TCONS_00009295|Name=TCONS_00009295|organism=Clytia hemisphaerica|type=CDS|length=3072bp|location=Sequence derived from alignment at sc0000091:578616..616564- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009295 vs. Swiss-Prot (Human)
Match: TBC31 (TBC1 domain family member 31 OS=Homo sapiens GN=TBC1D31 PE=1 SV=2) HSP 1 Score: 726.472 bits (1874), Expect = 0.000e+0 Identity = 388/940 (41.28%), Postives = 621/940 (66.06%), Query Frame = 3
Query: 150 TLDIGCKQSGQLWTRKVTPEVEDGLVLNIKNVSSNGFTTRHIRFQHLAYDSSGDRIATSDHHGNIHVLDLQKNRYNLVYSCGIALTSIIWNNYRINEIVIALSNNEVRCYDIGKRSLLSILKGHTSPVDSLSIHGSGRYLLTSSFDTTILWDLNTFTKKRTLNGAQEVGIQKVFFLPNSNHIVSCFQDDSIFVWDCESMKCVYQLTVPPERKPA-FKCLTATNDCRVLVGGGRSRFLYLWNMDNRQLIQVIELPDKVKSVKDIQFVTNVMALNQHQLLGVLAQDGVIRFIDTNNCSLKAELGSTSKRIHSFLLSMNSQYIGLIMDNGEIALHHLPTVIKDKQTHKFTVKKIASQTSSSNTIPSMNNNXXXXXXXXXXXXXXNQPPRSTISYRKT----QDASP--QSRLN--VGGISIKRLKTILQGFGEYPSKYRQLIWKNLLAIPENHTSFSALVDKGIHNAYIAIHERYPIKSQKLLRVLQRVLSALAHWSPIFGETEYLPMLVFPFVKMFPNNQLVCFEFVVTILMNWCQRWFEYFPNPPLSILAMVETLLSHHDPVLLKHFIDLDISTQLYAWPMLQTLYSEVLTRDDWLIVWDNVFSSHPSFMLYFLVAYLIHSRKALLCTQTKENIKVFFHHQNPVDIAMVIKETYRLSSSTXXXXXXXXXXXXRVPLPEGQYPIFDFYPKFVVNYLVXXXXXXXXXXXXXXXQKQLALDMKRQKELTQKEELAYYREQEQVVNAENERRQIIANEEKRLASQRKKLQSLRRDIAMQELEMHDEVXXXXXXXXXXXXXXXXXXXDDEMKRKFEQREVEMKDALTDAEIKAMQIKAQKLQLEEDLMREDVESSFRLQSEREILRQHEEQSSRKMKRVIDKAYAVDAEKLKEYQTELGKVGQRRQNIQVQADLAAQNKKWDMEREIQALQIARMNEENEQKENEL 2942
+ D+G K+SG++W RK +P DG+++NI + +S+ + + +RF ++A+D +GD + DH GNI+V DL NR+NLV A T++ +N R +E ++AL++ ++C+D + L+S ++GH S V S+S+H SG+Y +T+S DT LWDL+TF +KR LN Q VGIQKVFFLP SN I+SCF+D+SIF W+C+++ C YQL PPE +K T D R+L GG+S L+LW ++ RQL ++I++P KV++++ ++F+ + +Q+LGVL+QDG++RFI+ C L E+GS + I S +S + +YI IM+NG + ++ + + ++ + K+ +P N + K + + QP +S S +T QD + +S+ N G++ KRL+ +L+G+GEYP+KYR IW++LL +PENHT+FS L+DKG H A++ + ++YPIKS+KLLRVLQR LSALAHWS IF +T YLP+L FPFVK+F NNQL+CFE + T+++NWCQ WFEYFPNPP++IL+M+E +L+ HD LL+HFID DI++QLYAWP+L+T++SEVLTR++WL ++DN+FS+HPSF+L +VAY I SR LL K++ + FFHH+N +DI +VI++ Y L +TP D+ P L+ V L +GQYP+F+ YPKF+V+Y +ERERIR +EL+YLR++Q DM+ + + + E+ A+Y++QE + AE RR+++ EE+++ QR++L +++R++ ++E+ + D RR+F Q+ Q++M+L+RLDDE+ RK R+ E+ D E++ +++++QK E++L + ++++ + R+ + ++I+ + K + L K Q N Q + K D++R ++A++ EN +KE E+
Sbjct: 3 STDLGNKESGKIWHRKPSPATRDGIIVNIIHNTSD-YHPKVLRFLNVAFDGTGDCLIAGDHQGNIYVFDLHGNRFNLVQRTAQACTALAFNLRRKSEFLVALADYSIKCFDTVTKELVSWMRGHESSVFSISVHASGKYAITTSSDTAQLWDLDTFQRKRKLNIRQSVGIQKVFFLPLSNTILSCFKDNSIFAWECDTLFCKYQLPAPPESSSILYKVFAVTRDGRILAAGGKSNHLHLWCLEARQLFRIIQMPTKVRAIRHLEFLPDSFDAGSNQVLGVLSQDGIMRFINMQTCKLLFEIGSLDEGISSSAISPHGRYIASIMENGSLNIYSVQALTQEINKPPPPLVKVIED------LPK-NKLSSSDLKMKVTSGRVQQPAKSRESKMQTRILKQDLTGDFESKKNELPDGLNKKRLQILLKGYGEYPTKYRMFIWRSLLQLPENHTAFSTLIDKGTHVAFLNLQKKYPIKSRKLLRVLQRTLSALAHWSVIFSDTPYLPLLAFPFVKLFQNNQLICFEVIATLIINWCQHWFEYFPNPPINILSMIENVLAFHDKELLQHFIDHDITSQLYAWPLLETVFSEVLTREEWLKLFDNIFSNHPSFLLMTVVAYNICSRTPLLSCNLKDDFEFFFHHRNNLDINVVIRQVYHLMETTPTDIHPDSMLNVFVALTKGQYPVFNQYPKFIVDYQTQERERIRNDELDYLRERQTVEDMQAKVDQQRVEDEAWYQKQELLRKAEETRREMLLQEEEKMIQQRQRLAAVKRELKVKEMHLQDAARRRFLKLQQDQQEMELRRLDDEIGRKVYMRDREIAATARDLEMRQLELESQKRLYEKNLTENQEALAKEMRADADAYRRKVDLEEHMFHKLIEAGETQSQKTQKVIKENLAKAEQACLNTDWQIQSLHKQKCDDLQRNKCYQEVAKLLRENRRKEIEI 934 The following BLAST results are available for this feature:
BLAST of TCONS_00009295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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