TCONS_00009318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009318
Unique NameTCONS_00009318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009318 ID=TCONS_00009318|Name=TCONS_00009318|organism=Clytia hemisphaerica|type=transcript|length=537bp
NTGACAATGAGCTGGCTTGATCGAAGGCGGCGCCTTCGCTTCGGTTACCG
CCTAGGCGGTTATGAATGGCTGGTGTCAGATGAGAATGTGTGTCTCCAGA
AGTTTggtccagttcattataatgcacatttctatctctgttacatcatg
ttgtgcttggaaatatctcagttAAATTTAAATCCACTACAAAACATTAT
GTGAGCCACGAAAAGCACATTGTCTtatgctcaaaacaaaatgccgacaa
cttaaatgtttttcgcAGAAATCCAGCAACACAACCAATGTAGAGCAACT
TTATAGATTCTGTAGAGTCCATTCTTCatttaaataaatcatttcaatca
aagagattaagttttgatctaaaacTTGCCAAGAAATCTGTAGAATCATG
CTTACAGCTTGCTTTTCAGCTGGTTTTGATGTGTTGCACTACTGcagcta
ccatctttaattttaaggattacgtaatgccacggaaaataatattttga
cgcccgaaaagggcgtaaaaagagctttcttttggCG
Run BLAST on NCBI

transcript from alignment at sc0000091:424897..425433

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009318 ID=TCONS_00009318|Name=TCONS_00009318|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at sc0000091:424897..425433 (Clytia hemisphaerica)
CGccaaaagaaagctctttttacgcccttttcgggcgtcaaaatattatt
ttccgtggcattacgtaatccttaaaattaaagatggtagctgCAGTAGT
GCAACACATCAAAACCAGCTGAAAAGCAAGCTGTAAGCATGATTCTACAG
ATTTCTTGGCAAgttttagatcaaaacttaatctctttgattgaaatgat
ttatttaaatGAAGAATGGACTCTACAGAATCTATAAAGTTGCTCTACAT
TGGTTGTGTTGCTGGATTTCTgcgaaaaacatttaagttgtcggcatttt
gttttgagcataAGACAATGTGCTTTTCGTGGCTCACATAATGTTTTGTA
GTGGATTTAAATTTaactgagatatttccaagcacaacatgatgtaacag
agatagaaatgtgcattataatgaactggaccAAACTTCTGGAGACACAC
ATTCTCATCTGACACCAGCCATTCATAACCGCCTAGGCGGTAACCGAAGC
GAAGGCGCCGCCTTCGATCAAGCCAGCTCATTGTCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005210XLOC_005210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009318-exon-sc0000091-1491911889:424897..425433TCONS_00009318-exon-sc0000091-1491911889:424897..425433Clytia hemisphaericaexon
TCONS_00009318-exon-sc0000091-1510915933:424897..425433TCONS_00009318-exon-sc0000091-1510915933:424897..425433Clytia hemisphaericaexon
TCONS_00009318-exon-sc0000091-1575043694:424897..425433TCONS_00009318-exon-sc0000091-1575043694:424897..425433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:424897..425433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.38882	3.25813	2.48953	1.86622	16.2946	15.2842	17.8304	19.6797	5.64943	16.4653	10.0093	8.38597	12.1128	11.1021	6.24815	6.92412	6.9592	5.64964	6.11567	9.9408	6.93896	6.96322	4.07619	3.76749	10.2001	14.1607	7.38478	12.145	10.8683	16.6319
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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