TCONS_00009320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009320
Unique NameTCONS_00009320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009320 ID=TCONS_00009320|Name=TCONS_00009320|organism=Clytia hemisphaerica|type=transcript|length=287bp
GAACCTTTTGTATGCAAAacactaaaaaaataatttggcaTTAACTAAAT
ATTTTGTACCATTTTTTAACCGTTTGTAAGCCCATTTATCAGTTCTTAAG
ATTCTTACCAACCTGGTTAGTTTATTTAATAGTACATCATTGATACCAGG
CTTCAAGTAGCAATAAGTAATAAATAGTTTGAAAGCGGAGCTTATATTGT
AAAAATCATTTCTTTGTTTCATGAAGACCTTTTTGAAAGGGCATTCAAAA
AATAGTGTATCATATAATCTTTATCATAATTTTAAGN
Run BLAST on NCBI

transcript from alignment at sc0000091:426686..426972

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009320 ID=TCONS_00009320|Name=TCONS_00009320|organism=Clytia hemisphaerica|type=transcript|length=287bp|location=Sequence derived from alignment at sc0000091:426686..426972 (Clytia hemisphaerica)
NCTTAAAATTATGATAAAGATTATATGATACACTATTTTTTGAATGCCCT
TTCAAAAAGGTCTTCATGAAACAAAGAAATGATTTTTACAATATAAGCTC
CGCTTTCAAACTATTTATTACTTATTGCTACTTGAAGCCTGGTATCAATG
ATGTACTATTAAATAAACTAACCAGGTTGGTAAGAATCTTAAGAACTGAT
AAATGGGCTTACAAACGGTTAAAAAATGGTACAAAATATTTAGTTAAtgc
caaattatttttttagtgtTTTGCATACAAAAGGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005212XLOC_005212Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009320-exon-sc0000091-1491911889:426686..426972TCONS_00009320-exon-sc0000091-1491911889:426686..426972Clytia hemisphaericaexon
TCONS_00009320-exon-sc0000091-1510915933:426686..426972TCONS_00009320-exon-sc0000091-1510915933:426686..426972Clytia hemisphaericaexon
TCONS_00009320-exon-sc0000091-1575043694:426686..426972TCONS_00009320-exon-sc0000091-1575043694:426686..426972Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:426686..426972 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.452364	0.441126	0.512189	0	0	0.96412	0.581585	0.544473	0.762397	0	0	0.301272	0	0	0.256867	0.551316	0	1.39227	0.480873	1.0064	0.874742	0.640003	0	0.943095	0	1.73384	0.620281	0.66198	0.502089	0.511549
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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