TCONS_00009342 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009342
Unique NameTCONS_00009342
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009342 ID=TCONS_00009342|Name=TCONS_00009342|organism=Clytia hemisphaerica|type=transcript|length=355bp
CGCTGTTGTAATGTGAAATTCCAACCGATTCAAGGGAGAGTTAAGTGCTA
TTCATCATCTTTCTTTCCCTCCACCGTACAGTACTGGAATAAACTGCCAT
CAAATGTTGCAAACCTTGTTgatgaaaacaaatttaaaaaagaaatagat
gAAAATTTAACTTTAGGAATTTAAACTCTTACGAAATCGCTAAGATAGAT
AAAACTTACACTAAACTACTTACTCAAATCCTTTTGCTAGTTTTTGAATC
AATTCTCACACTTTTCCACACTAATCTACCATGCAAGCTAATCAACCCAA
ATCTGTCTgcttaaaatttaagatttcggCATTAagatcattttatattt
tagct
Run BLAST on NCBI

transcript from alignment at sc0000091:665951..666305

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009342 ID=TCONS_00009342|Name=TCONS_00009342|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0000091:665951..666305 (Clytia hemisphaerica)
agctaaaatataaaatgatctTAATGccgaaatcttaaattttaagcAGA
CAGATTTGGGTTGATTAGCTTGCATGGTAGATTAGTGTGGAAAAGTGTGA
GAATTGATTCAAAAACTAGCAAAAGGATTTGAGTAAGTAGTTTAGTGTAA
GTTTTATCTATCTTAGCGATTTCGTAAGAGTTTAAATTCCTAAAGTTAAA
TTTTcatctatttcttttttaaatttgttttcatcAACAAGGTTTGCAAC
ATTTGATGGCAGTTTATTCCAGTACTGTACGGTGGAGGGAAAGAAAGATG
ATGAATAGCACTTAACTCTCCCTTGAATCGGTTGGAATTTCACATTACAA
CAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005233XLOC_005233Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009342-exon-sc0000091-1491911889:665951..666305TCONS_00009342-exon-sc0000091-1491911889:665951..666305Clytia hemisphaericaexon
TCONS_00009342-exon-sc0000091-1510915933:665951..666305TCONS_00009342-exon-sc0000091-1510915933:665951..666305Clytia hemisphaericaexon
TCONS_00009342-exon-sc0000091-1575043694:665951..666305TCONS_00009342-exon-sc0000091-1575043694:665951..666305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:665951..666305 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.869057	2.41292	6.05437	2.33581	2.14557	0.5179	2.32015	1.07672	1.51098	1.92521	0	0.639351	0.872259	0.167834	1.65525	0.296152	0.547253	0.186972	0.516625	0.510251	2.2687	1.91763	0	0.506606	0.572621	1.61153	0.504147	1.21415	1.90474	1.08009
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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