TCONS_00009348 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009348
Unique NameTCONS_00009348
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009348 ID=TCONS_00009348|Name=TCONS_00009348|organism=Clytia hemisphaerica|type=transcript|length=647bp
AAATGGTAAAATAAAATGACTAATCAGATGAATTGATTGTAGCCAAGATT
TTGCGTGACTAGACTAGActgtgttttgattttaaaactcaagtttatta
tttacaaaaataaggTTATTTTCATTGAGAAAGAAGGAACTTCATAATTA
TGAGATCTCTGACCATTCTCACAAATATTTTCGACGTTCGTGTTTATGCA
TGCATTATGTGAGTCTATCACCAAGCGTTCTCTCTGTTTAATTAGAAATT
CATTTATTCACAATGTTTTTTCCACTGATGTAGCATTTTCAACAGTTTTA
TTGATGGAATTCATCTTTGATAGTCATCCACGAGCAACGATAAACATTCT
CTTCCGCTATATTTGGTTATTCTAACCTTTGAGctacattttcattttgt
aaaaaagatAACTGAAGACTAACAACACCCCTTGTTTTAACTCGATTTTG
CTTCCTCTGTTGGATTAGATTCAGTCTGTTCTACTTTTGGGGCTTCTGGC
TCGGCGGCAGGAGCCTCTGGTTCGGCTGCTGGTGCTTCAGGTTCGGCGGC
AGGAGCTTCGGCAGCAGGGGCCTCTGGCTCGGCGGTGGGAGTTTTGATCA
CTTCCTCTTCAGTTGCTGGAGCAGGAGCTTTGCCGTTTTGAGCTGAA
Run BLAST on NCBI

transcript from alignment at sc0000093:124998..125854+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009348 ID=TCONS_00009348|Name=TCONS_00009348|organism=Clytia hemisphaerica|type=transcript|length=857bp|location=Sequence derived from alignment at sc0000093:124998..125854+ (Clytia hemisphaerica)
AAATGGTAAAATAAAATGACTAATCAGATGAATTGATTGTAGCCAAGATT
TTGCGTGACTAGACTAGActgtgttttgattttaaaactcaagtttatta
tttacaaaaataaggTTATTTTCATTGAGAAAGAAGGAACTTCATAATTA
TGAGATCTCTGACCATTCTCACAAATATTTTCGACGTTCGTGTTTATGCA
TGCATTATGTGAGTCTATCACCAAGCGTTCTCTCTGTTTAATTAGAAATT
CATTTATTCACAATGTTTTTTCCACTGATGTAGCATTTTCAACAGTTTTA
TTGATGGAATTCATCTTTGATAGTCATCCACGAGCAACGATAAACATTCT
CTTCCGCTATATTTGGTTATTCTAACCTTTGAGctacattttcattttgt
aaaaaagatAACTGAAGACTAACAACACCCCTTGTTTTAACTCGATTTTG
CTTCCTCTGTTGGATTAGATTCAGTCTGTTCTACTTTTGGGGCTTCTGGC
TCTACTTTCGGGGCTTCTGGTTCGGCTGCTGGGGCCTCTGGCTCGGCAGC
AGGTGCTTTTGGTTCAGCAGCAGGAGCTTCAGGCTCGGCGGCAGGAGCCT
CTGGTTCGGCTGTTGGTGCTTCTGGTTCGGCTGCTGGTGCTTCAGGTTCG
GCTGCTGGTGCTTCTGGTTCGGCTGCTGGTGCTTCTGGTTCGGCGGCAGG
AGCCTCTGGTTCGGCGGCAGGTGCCTCTGGTTCGGCTGCTGGTGCTTCAG
GTTCGGCGGCAGGAGCTTCGGCAGCAGGGGCCTCTGGCTCGGCGGTGGGA
GTTTTGATCACTTCCTCTTCAGTTGCTGGAGCAGGAGCTTTGCCGTTTTG
AGCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005238XLOC_005238Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009348-exon-sc0000093-1491911889:124998..125495TCONS_00009348-exon-sc0000093-1491911889:124998..125495Clytia hemisphaericaexon
TCONS_00009348-exon-sc0000093-1510915933:124998..125495TCONS_00009348-exon-sc0000093-1510915933:124998..125495Clytia hemisphaericaexon
TCONS_00009348-exon-sc0000093-1575043694:124998..125495TCONS_00009348-exon-sc0000093-1575043694:124998..125495Clytia hemisphaericaexon
TCONS_00009348-exon-sc0000093-1491911889:125580..125595TCONS_00009348-exon-sc0000093-1491911889:125580..125595Clytia hemisphaericaexon
TCONS_00009348-exon-sc0000093-1510915933:125580..125595TCONS_00009348-exon-sc0000093-1510915933:125580..125595Clytia hemisphaericaexon
TCONS_00009348-exon-sc0000093-1575043694:125580..125595TCONS_00009348-exon-sc0000093-1575043694:125580..125595Clytia hemisphaericaexon
TCONS_00009348-exon-sc0000093-1491911889:125722..125854TCONS_00009348-exon-sc0000093-1491911889:125722..125854Clytia hemisphaericaexon
TCONS_00009348-exon-sc0000093-1510915933:125722..125854TCONS_00009348-exon-sc0000093-1510915933:125722..125854Clytia hemisphaericaexon
TCONS_00009348-exon-sc0000093-1575043694:125722..125854TCONS_00009348-exon-sc0000093-1575043694:125722..125854Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:124998..125854 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.484453	1.09633	0	0	0	0	0	0	0	0	0	0	0	0	0.249811	0.338384	0.358571	0.306197	0	0	0	0.744825	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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