TCONS_00009350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009350
Unique NameTCONS_00009350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009350 ID=TCONS_00009350|Name=TCONS_00009350|organism=Clytia hemisphaerica|type=transcript|length=710bp
AAATGGTAAAATAAAATGACTAATCAGATGAATTGATTGTAGCCAAGATT
TTGCGTGACTAGACTAGActgtgttttgattttaaaactcaagtttatta
tttacaaaaataaggTTATTTTCATTGAGAAAGAAGGAACTTCATAATTA
TGAGATCTCTGACCATTCTCACAAATATTTTCGACGTTCGTGTTTATGCA
TGCATTATGTGAGTCTATCACCAAGCGTTCTCTCTGTTTAATTAGAAATT
CATTTATTCACAATGTTTTTTCCACTGATGTAGCATTTTCAACAGTTTTA
TTGATGGAATTCATCTTTGATAGTCATCCACGAGCAACGATAAACATTCT
CTTCCGCTATATTTGGTTATTCTAACCTTTGAGctacattttcattttgt
aaaaaagatAACTGAAGACTAACAACACCCCTTGTTTTAACTCGATTTTG
CTTCCTCTGTTGGATTAGATTCAGTCTGTTCTACTTTTGGGGCTTCTGGT
TCGGCTGCTGGTGCTTCTGGTTCGGCTGCTGGTGCTTCTGGTTCGGCGGC
AGGAGCCTCTGGTTCGGCGGCAGGTGCCTCTGGTTCGGCTGCTGGTGCTT
CAGGTTCGGCGGCAGGAGCTTCGGCAGCAGGGGCCTCTGGCTCGGCGGTG
GGAGTTTTGATCACTTCCTCTTCAGTTGCTGGAGCAGGAGCTTTGCCGTT
TTGAGCTGAA
Run BLAST on NCBI

transcript from alignment at sc0000093:124998..125854+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009350 ID=TCONS_00009350|Name=TCONS_00009350|organism=Clytia hemisphaerica|type=transcript|length=857bp|location=Sequence derived from alignment at sc0000093:124998..125854+ (Clytia hemisphaerica)
AAATGGTAAAATAAAATGACTAATCAGATGAATTGATTGTAGCCAAGATT
TTGCGTGACTAGACTAGActgtgttttgattttaaaactcaagtttatta
tttacaaaaataaggTTATTTTCATTGAGAAAGAAGGAACTTCATAATTA
TGAGATCTCTGACCATTCTCACAAATATTTTCGACGTTCGTGTTTATGCA
TGCATTATGTGAGTCTATCACCAAGCGTTCTCTCTGTTTAATTAGAAATT
CATTTATTCACAATGTTTTTTCCACTGATGTAGCATTTTCAACAGTTTTA
TTGATGGAATTCATCTTTGATAGTCATCCACGAGCAACGATAAACATTCT
CTTCCGCTATATTTGGTTATTCTAACCTTTGAGctacattttcattttgt
aaaaaagatAACTGAAGACTAACAACACCCCTTGTTTTAACTCGATTTTG
CTTCCTCTGTTGGATTAGATTCAGTCTGTTCTACTTTTGGGGCTTCTGGC
TCTACTTTCGGGGCTTCTGGTTCGGCTGCTGGGGCCTCTGGCTCGGCAGC
AGGTGCTTTTGGTTCAGCAGCAGGAGCTTCAGGCTCGGCGGCAGGAGCCT
CTGGTTCGGCTGTTGGTGCTTCTGGTTCGGCTGCTGGTGCTTCAGGTTCG
GCTGCTGGTGCTTCTGGTTCGGCTGCTGGTGCTTCTGGTTCGGCGGCAGG
AGCCTCTGGTTCGGCGGCAGGTGCCTCTGGTTCGGCTGCTGGTGCTTCAG
GTTCGGCGGCAGGAGCTTCGGCAGCAGGGGCCTCTGGCTCGGCGGTGGGA
GTTTTGATCACTTCCTCTTCAGTTGCTGGAGCAGGAGCTTTGCCGTTTTG
AGCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005238XLOC_005238Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009350-exon-sc0000093-1491911889:124998..125495TCONS_00009350-exon-sc0000093-1491911889:124998..125495Clytia hemisphaericaexon
TCONS_00009350-exon-sc0000093-1510915933:124998..125495TCONS_00009350-exon-sc0000093-1510915933:124998..125495Clytia hemisphaericaexon
TCONS_00009350-exon-sc0000093-1575043694:124998..125495TCONS_00009350-exon-sc0000093-1575043694:124998..125495Clytia hemisphaericaexon
TCONS_00009350-exon-sc0000093-1491911889:125643..125854TCONS_00009350-exon-sc0000093-1491911889:125643..125854Clytia hemisphaericaexon
TCONS_00009350-exon-sc0000093-1510915933:125643..125854TCONS_00009350-exon-sc0000093-1510915933:125643..125854Clytia hemisphaericaexon
TCONS_00009350-exon-sc0000093-1575043694:125643..125854TCONS_00009350-exon-sc0000093-1575043694:125643..125854Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:124998..125854 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.08825	3.55195	6.22946	5.36327	0.726699	1.46067	1.97724	2.79005	2.36962	13.3586	2.33416	1.30662	1.56829	2.32747	6.69287	3.57449	37.0734	42.1521	2.46309	3.97349	142.998	154.491	126.541	157.481	72.8025	60.812	67.4516	106.983	44.6625	29.3455
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top