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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009382 ID=TCONS_00009382|Name=TCONS_00009382|organism=Clytia hemisphaerica|type=transcript|length=2264bp
gttgtaCTCCTTCGCAGGTTTCCAGCGAGCTTGCTCTATTGCCCTAATCC
TCAAAAGGGAAGTATTTTTTCCAATTATTTCATTTAGTATAAAAGCACAA
GCATACAAGCAAGGAGTAAAAGACTACACGTCCACAGACACGAAGGAACA
ATCAAAATGATTCGAGGCACAGTATTTCTTGCATTTTGTATGGTGGTTGC
ATTTTGCAATGCAAGTTTACGGGATCACCAAGAAGACCATTATCATAGCT
ACTACAAGAAAAGAGAAATTCTCGAGATTCCACAACTCGGAGATGCCAAC
CCATTGATCAATCTACAAAACGAAGCTGCTCAACGTGATTATTTCTTCCA
TAATCTCGTCAAAGCTAACGATTTCAACACAACTGTTTTTAAGATTCAAA
TGGAAAGAGAACGTGTGATTATTTCAGATCCTATTGCTATCCGATCAATG
TACCCTGTCAAGAATATCATTAAAAGTACTGGTGGGACGTCCATTGAATA
CAATGATTTGATCTCTGGTGGTTATATTCCTTCATTTATGGATAATGGTA
AAAGCCATAACACCAAGAAAGCTCGCCAATACCAGCTCTTGAAAAATCGT
CTTGAAACGTATGGTCTCCACAGTACGTTTAAAGACATCCAAAGCTATCT
AAAGGAAATTGAGGTTGATTCTGAAAATACACCAATCGATATTGCTAATC
AAATCGCAAAAATCAGCCAAGATGCAATGACCAAACTTCTCCTTGGAAAG
AGAATAAACAATTTCGACCTCTTCACAAACTGGTTTGGATCTTCGTTGAA
AGTCATCAAGGAACTGGATCCTACTTACGGCTCCAAAGACGAGCTCTATC
AAGAACTGTACACTCAAATGTTGGCATACATCCAATCTACACCAGTTGCC
AAACAATTAGAAGATACTGAAGATAAAGTAAACCTTGAGAACGAATTAAT
GTTTTTCACCATCTGGTTAGCTGCTGGAGGTGTTCAATTTTCCTTTAGAT
CTGCTTTGAAGTATTGGGCTGAATTGGAGGAAGAAGAGCGAGAAGATTTA
GAAGCAGAAATTGAGAAGTTCATGGATAAATACAACCATGAAAATCATTT
TGTACACAACTTGAATCGCAAGCTTCCCTTGTTGACAAAGTTTGTTATGG
AAGTTATTCGCTTGGAACCAGCAGCTGCCGTCATCCGTGGCCAAGCACGA
CGAGATTTTATCGTCACAACTTCAAACGGCCGTTACCAGATCAAACAAGG
TACGTATCTTCAAGCAGATGTCGTAAGTGCTCAACGTAACCCAATCAAAT
TCAAAGATGCAGACGAAGTCAAATTGGATCGACACAGCAAAAATGTCAAG
AAATATTTCTACACTTTTGGAGGGCCATATAGACAACGTGCCACTAAAAC
CAATCACAAATGTCTTGGTCAAACCTTGGCTattgatttcatcaaaatgt
tcTTGATCCATACCACTCAATGTGATGTTGAAATTGATTCTATCCAAACG
TCAACCTCCAAAACTGGTGGTCATGATATTAAAGTTACCAAATTCAAGTG
TTAAAAACTGCATTATCTCATCTATTcccacacccctgtctcacagcccc
ggttgaatttttttccttcgtggggataaaaattcctgttcaaatcccaa
tggggatagaaattctattgctccaaggttaaaaaatccagtggggatgg
ttttggagtacaatttttaaacattgaatttcgaatggggatgaaatcaa
agtcaatttcccagtggggatgaaattctagggtattttcccaccgggga
cgaaatttttgccaaattttccagtggggctgggtcaccagcgggtctgt
gacacaggagtgTATTCCCATTAACTgatttccaaaagaaaagaatttcc
tCAGAATCAGAGCAGGAAAAGATATTCTATACAAATATGCttaaataaat
ttctttatGTCGGTTTTAAAgtaaacattgaattttatttttctcattac
tAAACGATAGTGTATTTTATGATGAATACTACtaaaaaaagattattaat
TATGCTAAAAATGAAGATTCATTTATTGCCCGAGAGGGGGGGGGCACTAT
CGattcaaaaacaaacaaacgtgtggcccaaaattaggcctttgaaatag
ggctcttacagtgcagagaaaagtTAGCCAAATTTGACTTATATACTGCg
ttttttggatttctttttacCATTTCAAGGCAAAATATGGTCTGATTTTA
AAACCTAAACGTGG Run BLAST on NCBI protein sequence of TCONS_00009382-protein >TCONS_00009382-protein ID=TCONS_00009382-protein|Name=TCONS_00009382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MIRGTVFLAFCMVVAFCNASLRDHQEDHYHSYYKKREILEIPQLGDANPL
INLQNEAAQRDYFFHNLVKANDFNTTVFKIQMERERVIISDPIAIRSMYP
VKNIIKSTGGTSIEYNDLISGGYIPSFMDNGKSHNTKKARQYQLLKNRLE
TYGLHSTFKDIQSYLKEIEVDSENTPIDIANQIAKISQDAMTKLLLGKRI
NNFDLFTNWFGSSLKVIKELDPTYGSKDELYQELYTQMLAYIQSTPVAKQ
LEDTEDKVNLENELMFFTIWLAAGGVQFSFRSALKYWAELEEEEREDLEA
EIEKFMDKYNHENHFVHNLNRKLPLLTKFVMEVIRLEPAAAVIRGQARRD
FIVTTSNGRYQIKQGTYLQADVVSAQRNPIKFKDADEVKLDRHSKNVKKY
FYTFGGPYRQRATKTNHKCLGQTLAIDFIKMFLIHTTQCDVEIDSIQTST
SKTGGHDIKVTKFKC Run BLAST on NCBI transcript from alignment at sc0000093:602892..607682+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009382 ID=TCONS_00009382|Name=TCONS_00009382|organism=Clytia hemisphaerica|type=transcript|length=4791bp|location=Sequence derived from alignment at sc0000093:602892..607682+ (Clytia hemisphaerica)
gttgtaCTCCTTCGCAGGTTTCCAGCGAGCTTGCTCTATTGCCCTAATCC
TCAAAAGGGAAGTATTTTTTCCAATTATTTCATTTAGTATAAAAGCACAA
GCATACAAGCAAGGAGTAAAAGACTACACGTCCACAGACACGAAGGAACA
ATCAAAATGATTCGAGGCACAGTATTTCTTGCATTTTGTATGGTGGTTGC
ATTTTGCAATGCAAGTTTACGGGATCACCAAGAAGACCATTATCATAGCT
ACTACAAGAAAAGAGAAATTCTCGAGATTCCACAACTCGGAGATGCCAAC
CCATTGATCAATCTACAAAACGAAGCTGCTCAACGTGATTATTTCTTCCA
TAATCTCGTCAAAGCTAACGATTTCAACACAACTGTTTTTAAGATTCAAA
TGGAAAGAGAACGTGTGATTATTTCAGATCCTATTGCTATCCGATCAATG
TACCCTGTCAAGAATATCATTAAAAGTACTGGTGGGACGTCCATTGAATA
CAATGATTTGATCTCTGGTGGTTATATTCCTTCATTTATGGATAATGGTG
AGTTATTCGGcttatttcttttgatttctatttttttgatgTCTTAGACT
GGCACGCTAGTCGGGCTGGAACGATATCACGCGGTAATAGTGAGTGTAGG
AGTCAGGTAAGCATAGGAAGAAATTGTTGTCTGCTGCAAGGGCTGAAAGC
CCTTAAGGATGAAAGCCCTTAAGCCCaattaatcagcagcctctcaccaa
cttttgctcgttttCCTACGTaactcctattctagcaaacgcccgctgCC
TTTATGCccccctctgacatgattaattaacagactagtttgctagtcta
atgATGTCTTCAACCCATAGTATAAAAAAGCCGCGGCTAGAATGTTTACc
acattgtcttttcagttaattgctgtccTAACTTTGTCTCTGAGCTTttt
aagaacatcaagattgtcagtttattctgagttacatgtttttttttata
agtgaATGTCTGCCccttctcaaacaatagagccattgtttaggtaccaa
aaactgagcctgcatatgcttataaaacgttatgcttataaaagaaaaaa
tagctTTTGcaatttctcttttattttacttATCAACAACTTATGATGTT
ACTCAATAGAACACTATGAACTAACgctggacatattttaggggtatttt
gaggaaataatactttttagccaaaattaaaatcataaGAACTAAATTCA
TAATAATTGCGAAGTTTTTAGTTTGGAATTTTtacagtattatcttgatg
ttATTTTACGACAGAGAtaaaacaacagaaattcaggcGTTaccattcca
gccgcggctttcttatactatgttcAAACCCATCGAGTTCAAAGCCCTAG
GGGAagaattaaaacttgaaaacctccttctgtgagtatttttgtccatt
ttgccATAAGATTGGGTGTTTCGTAGTGTTTTTACTTGCCaaatcttaaa
atgttttaagtTTATACCTAATATTTTGGGTATCGAACGAATACTCCTCC
ATGGAACCTAATTAAAGTGATCGGAATTACCACTGTGATGCAgtctaatt
ttaataaattcaGTTCCAAAAGAGAATACACCTTTTCCACCgaagtcgcg
cggtcaggcgcgtacCATCTAAttattatccccctaaactcgatccaatc
cttttttgacacaattttctattgtctataggggcgaaaaaaggactggg
acggttttagtgggataaagcggacaaaaaaatgcccgcgcggcaattga
cgGCTactgtcgaaaaggtgtatttcttAGGAGGAAGAAAATTGTATTGG
AATTGGATCTGAAATTCATTACGTTATCGTGAATCAAAACTTAAGCATTG
AAGGCACTATCACGTGAATCACGAATTATAAAGTGTCGATAATGGGATTT
GAAATTATCTTCCTTTTTCTTGACGCGTAAATAATATATGTCAAATATTG
GATTTGAAATTGTCTTCCGCTCTTTCTTGACGCGTAAATTTACGCAATTC
TATCGAATCTTTTTCATCTcaacaacgtttttttttaaagaggaagtttt
ttttcaaagttgaaagtTTTAATCAGATGCCTGATTCGTCATTATTTTAT
AGACCGAGTTGGAAAAAAAGcgggaaaatgaaaatatttttctcgaaTCC
ATATTCCCTTGGTTTCCAAGAAAATACGTCTTGTTCTTAATACTTTCAAA
TCCGACAATTAACGACGTACCGGAGGGGTGCAAGGCTTAACGGAGCTCCG
GGCGGGTAGCTTCATTTTCCATCTGAAAGTTTTAATTCTTCCCCTAGGGC
TTTGAACTCAATGGGTTTgaacatagtataagaaagccgcggctggaatg
gtAACgcctgaatttctgttgttttaTCTCTGTCGTAAAATaacatcaag
ataatactgtaAAAATTCCAAACTAAAAACTTCGCAATTANAGATTTGGC
AAGTAAAAACACTACGAAACACCCAATCTTATggcaaaatggacaaaaat
actcacagaagggtaaaaataagaacattttcaggcttaaaagtAGGcaa
aaaaagctaagaacattttaaggtttcaaCTGTAGGACTTTCTCATAAAC
GTGCAGTCGGTTTCATTGGATTAAATATAAAAGACTGTCTTATTTTGAAA
AGATGGATGTTAATGAAAATGACGGAAAGTTTGTAGATTACGATGGAATT
TGATTAAATCACCATTCTAAAGATCGGTCAGTAACCTCAACTTTACAGAG
GAATTGAGACTGTAAAACATCAATCCAAAAGtcatttgattaaaaacata
ttCGGCTGTAAAAAGGTTCATCAGCAATAGAAACTCATTGGTAAAAGCTA
AAACTTTTAAGAATTTTCCACCGACAACGTAATTTGTCATGAATTCAAGA
GATTTTCAGATGTTTTTAACTTCTTGTCCTAAGCATGTCCTAAGATACCA
TGAAAGCTGCACTATAGATGTAGATACAAAAGAAATATCAATGTTATAAT
GCGTTTCTATTTCTCTATTCATAGGTAAAAGCCATAACACCAAGAAAGCT
CGCCAATACCAGCTCTTGAAAAATCGTCTTGAAACGTATGGTCTCCACAG
TACGTTTAAAGACATCCAAAGCTATCTAAAGGAAATTGAGGTTGATTCTG
AAAATACACCAATCGATATTGCTAATCAAATCGCAAAAATCAGCCAAGAT
GCAATGACCAAACTTCTCCTTGGAAAGAGAATAAACAATTTCGACCTCTT
CACAAACTGGTTTGGATCTTCGTTGAAAGTCATCAAGGAACTGGATCCTA
CTTACGGCTCCAAAGACGAGCTCTATCAAGAACTGTACACTCAAATGTTG
GCATACATCCAATCTACACCAGTTGCCAAACAATTAGAAGATACTGAAGA
TAAAGTAAACCTTGAGAACGAATTAATGTTTTTCACCATCTGGTTAGCTG
CTGGAGGTGTTCAATTTTCCTTTAGATCTGCTTTGAAGTATTGGGCTGAA
TTGGAGGAAGAAGAGCGAGAAGATTTAGAAGCAGAAATTGAGAAGTTCAT
GGATAAATACAACCATGAAAATCATTTTGTACACAACTTGAATCGCAAGC
TTCCCTTGTTGACAAAGTTTGTTATGGAAGTTATTCGCTTGGAACCAGCA
GCTGCCGTCATCCGTGGCCAAGCACGACGAGATTTTATCGTCACAACTTC
AAACGGCCGTTACCAGATCAAACAAGGTACGTATCTTCAAGCAGATGTCG
TAAGTGCTCAACGTAACCCAATCAAATTCAAAGATGCAGACGAAGTCAAA
TTGGATCGACACAGCAAAAATGTCAAGAAATATTTCTACACTTTTGGAGG
GCCATATAGACAACGTGCCACTAAAACCAATCACAAATGTCTTGGTCAAA
CCTTGGCTattgatttcatcaaaatgttcTTGATCCATACCACTCAATGT
GATGTTGAAATTGATTCTATCCAAACGTCAACCTCCAAAACTGGTGGTCA
TGATATTAAAGTTACCAAATTCAAGTGTTAAAAACTGCATTATCTCATCT
ATTcccacacccctgtctcacagccccggttgaatttttttccttcgtgg
ggataaaaattcctgttcaaatcccaatggggatagaaattctattgctc
caaggttaaaaaatccagtggggatggttttggagtacaatttttaaaca
ttgaatttcgaatggggatgaaatcaaagtcaatttcccagtggggatga
aattctagggtattttcccaccggggacgaaatttttgccaaattttcca
gtggggctgggtcaccagcgggtctgtgacacaggagtgTATTCCCATTA
ACTgatttccaaaagaaaagaatttcctCAGAATCAGAGCAGGAAAAGAT
ATTCTATACAAATATGCttaaataaatttctttatGTCGGTTTTAAAgta
aacattgaattttatttttctcattactAAACGATAGTGTATTTTATGAT
GAATACTACtaaaaaaagattattaatTATGCTAAAAATGAAGATTCATT
TATTGCCCGAGAGGGGGGGGGCACTATCGattcaaaaacaaacaaacgtg
tggcccaaaattaggcctttgaaatagggctcttacagtgcagagaaaag
tTAGCCAAATTTGACTTATATACTGCgttttttggatttctttttacCAT
TTCAAGGCAAAATATGGTCTGATTTTAAAACCTAAACGTGG Coding sequence (CDS) from alignment at sc0000093:602892..607682+ >TCONS_00009382 ID=TCONS_00009382|Name=TCONS_00009382|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at sc0000093:602892..607682+ (Clytia hemisphaerica)
ATGATTCGAGGCACAGTATTTCTTGCATTTTGTATGGTGGTTGCATTTTG
CAATGCAAGTTTACGGGATCACCAAGAAGACCATTATCATAGCTACTACA
AGAAAAGAGAAATTCTCGAGATTCCACAACTCGGAGATGCCAACCCATTG
ATCAATCTACAAAACGAAGCTGCTCAACGTGATTATTTCTTCCATAATCT
CGTCAAAGCTAACGATTTCAACACAACTGTTTTTAAGATTCAAATGGAAA
GAGAACGTGTGATTATTTCAGATCCTATTGCTATCCGATCAATGTACCCT
GTCAAGAATATCATTAAAAGTACTGGTGGGACGTCCATTGAATACAATGA
TTTGATCTCTGGTGGTTATATTCCTTCATTTATGGATAATGGTAAAAGCC
ATAACACCAAGAAAGCTCGCCAATACCAGCTCTTGAAAAATCGTCTTGAA
ACGTATGGTCTCCACAGTACGTTTAAAGACATCCAAAGCTATCTAAAGGA
AATTGAGGTTGATTCTGAAAATACACCAATCGATATTGCTAATCAAATCG
CAAAAATCAGCCAAGATGCAATGACCAAACTTCTCCTTGGAAAGAGAATA
AACAATTTCGACCTCTTCACAAACTGGTTTGGATCTTCGTTGAAAGTCAT
CAAGGAACTGGATCCTACTTACGGCTCCAAAGACGAGCTCTATCAAGAAC
TGTACACTCAAATGTTGGCATACATCCAATCTACACCAGTTGCCAAACAA
TTAGAAGATACTGAAGATAAAGTAAACCTTGAGAACGAATTAATGTTTTT
CACCATCTGGTTAGCTGCTGGAGGTGTTCAATTTTCCTTTAGATCTGCTT
TGAAGTATTGGGCTGAATTGGAGGAAGAAGAGCGAGAAGATTTAGAAGCA
GAAATTGAGAAGTTCATGGATAAATACAACCATGAAAATCATTTTGTACA
CAACTTGAATCGCAAGCTTCCCTTGTTGACAAAGTTTGTTATGGAAGTTA
TTCGCTTGGAACCAGCAGCTGCCGTCATCCGTGGCCAAGCACGACGAGAT
TTTATCGTCACAACTTCAAACGGCCGTTACCAGATCAAACAAGGTACGTA
TCTTCAAGCAGATGTCGTAAGTGCTCAACGTAACCCAATCAAATTCAAAG
ATGCAGACGAAGTCAAATTGGATCGACACAGCAAAAATGTCAAGAAATAT
TTCTACACTTTTGGAGGGCCATATAGACAACGTGCCACTAAAACCAATCA
CAAATGTCTTGGTCAAACCTTGGCTattgatttcatcaaaatgttcTTGA
TCCATACCACTCAATGTGATGTTGAAATTGATTCTATCCAAACGTCAACC
TCCAAAACTGGTGGTCATGATATTAAAGTTACCAAATTCAAGTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009382-exon-sc0000093-1491911889:602892..603438 | TCONS_00009382-exon-sc0000093-1491911889:602892..603438 | Clytia hemisphaerica | exon |
| TCONS_00009382-exon-sc0000093-1510915933:602892..603438 | TCONS_00009382-exon-sc0000093-1510915933:602892..603438 | Clytia hemisphaerica | exon |
| TCONS_00009382-exon-sc0000093-1575043694:602892..603438 | TCONS_00009382-exon-sc0000093-1575043694:602892..603438 | Clytia hemisphaerica | exon |
| TCONS_00009382-exon-sc0000093-1491911889:605966..607682 | TCONS_00009382-exon-sc0000093-1491911889:605966..607682 | Clytia hemisphaerica | exon |
| TCONS_00009382-exon-sc0000093-1510915933:605966..607682 | TCONS_00009382-exon-sc0000093-1510915933:605966..607682 | Clytia hemisphaerica | exon |
| TCONS_00009382-exon-sc0000093-1575043694:605966..607682 | TCONS_00009382-exon-sc0000093-1575043694:605966..607682 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000093 | supercontig | sc0000093:602892..607682 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001128 | Cyt_P450 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
The following BLAST results are available for this feature:
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