TCONS_00009390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009390
Unique NameTCONS_00009390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length973

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009390 ID=TCONS_00009390|Name=TCONS_00009390|organism=Clytia hemisphaerica|type=transcript|length=973bp
CTCCTCTATCATAAAAGCATACTGTTGCATaataatttgttcatttttta
tttctttccagTGGTtgaaaaaagacaataaaatataatcaCAGAGAGAT
AGAGACAGAAGTTTCTGCAGaggaataaaaatattttcagtttgaaaGAA
GCATATTGCTGACTGGTTGTTAAGGAtatcaataatttttattttttgga
aaaaatgggaAATTCAACAAGCAAAAACAAGACTAAGGAGAGTGCAGCTC
AAAACGGCAAAGCTCCTGCTCCAGCAACTGAAGAGGAAGTGATCAAAACT
CCCACCGCCGAGCCAGAGGCCCCTGCTGCCGAAGCTCCTGCCGCCGAACC
TGAAGCTCCTGCCGCCGAACCAGAAGCTCCTGCCGCCGAGCCTGAAGCTC
CTGCTGCTGAACCAAAAGCACCTGCTGCCGAGCCAGAGGCCCCAGCAGCC
GAACCAGAAGCCCCGAAAGTAGAGCCAGAAGCCCCAAAAGTAGAACAGAC
TGAATCTAATCCAACAGAGGAAGCAAAATCGAGTTAAAACAAGGGGTGTT
GTTAGTCTTCAGTTatcttttttacaaaatgaaaatgtagCTCAAAGGTT
AGAATAACCAAATATAGCGGAAGAGAATGTTTATCGTTGCTCGTGGATGA
CTATCAAAGATGAATTCCATCAATAAAACTGTTGAAAATGCTACATCAGT
GGAAAAAACATTGTGAATAAATGAATTTCTAATTAAACAGAGAGAACGCT
TGGTGATAGACTCACATAATGCATGCATAAACACGAACGTCGAAAATATT
TGTGAGAATGGTCAGAGATCTCATAATTATGAAGTTCCTTCTTTCTCAAT
GAAAATAAccttatttttgtaaataataaacttgagttttaaaatcaaaa
cacagTCTAGTCTAGTCACGCAAAATCTTGGCTACAATCAATTCATCTGA
TTAGTCATTTTATTTTACCATTT
Run BLAST on NCBI

protein sequence of TCONS_00009390-protein

>TCONS_00009390-protein ID=TCONS_00009390-protein|Name=TCONS_00009390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MGNSTSKNKTKESAAQNGKAPAPATEEEVIKTPTAEPEAPAAEAPAAEPE
APAAEPEAPAAEPEAPAAEPKAPAAEPEAPAAEPEAPKVEPEAPKVEQTE
SNPTEEAKSS
Run BLAST on NCBI

transcript from alignment at sc0000093:124998..128224-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009390 ID=TCONS_00009390|Name=TCONS_00009390|organism=Clytia hemisphaerica|type=transcript|length=3227bp|location=Sequence derived from alignment at sc0000093:124998..128224- (Clytia hemisphaerica)
CTCCTCTATCATAAAAGCATACTGTTGCATAATAATTTGTTCATTTTTTA
TTTCTTTCCAGTGGTTGAAAAAAGACAATAAAATATAATCACAGAGAGAT
AGAGACAGAAGTTTCTGCAGAGGAATAAAAATATTTTCAGTTTGAAAGAA
GCATATTGCTGACTGGTTGTTAAGGATATCAATAATTTTTATTTTTTGGA
AAAAATGGGAAATTCAACAAGCAAAAACAAGACTAAGGAGAGTGCAGGTG
AGATTTCGTTTTTGTTTTGATTTTACATTCCCATAAAGATTCTGCAACGG
TTTTGTTTATTCTTGCTAAAAACTAAATTAATATTTAGGCACACTTTCTC
TCTTTAATTAAGGATCGTTAGTATTTCTGCTGAAGTTGTCAATTACAGCG
AGAAAGTCTTTCTTCCTAATAATGAAAGTTTTTTCCTTTTTCTATTTTTT
GTTTATCATTGTTTTTGCTTCACTAAAATAATTTTAAATTGGATCAGGAC
CTGCGTCTTAATGCTAACACAACATCTTAGCTGGCACTGGGCGAAATAAG
AGATTTCCATGTTGAAAATATGATATTTCCATATACTTTTGTAAATATCA
TATTTTCAAAATATTTCCAACTTTTGGAAATATGATATTTCCAAAAATTG
GAAATATCATGAAATATGATATTTCCACAACTTTGGAAATATGGAAAAGT
CATATTTTTATATTTTCAAGATATTTCCAGGATTGGAAATCTCTTATTTC
GCCCAGTGTGTATTTTCGACAAAGATTCACTCAAATCGATAAAAGGAGTG
ACTAATACTTTCAGGAACTGAAGGAATTTAACTTTGCACGCAGACTCCTT
CTGCTATATATATTGAACGAAAATGACGAGATTTCTCCACTTTTTTATAA
CAATTTTAGCTGTAAAGGAAACTGTTTCATAAAATAACTCACTGTAATGA
CAGTTTACAATCAGAAATATGTTCGTTATGTGGTTTTAATAAATTTTACC
CAGCTATAAGCAGTGCAATGATAGATTTTCATGACTTGATAGTTTGATTG
TACACAGTAGTGATTATTTTGTATCCCCCGTCTGATTAGCACTTGTGAAA
AAATGCCCGAGGGGAGCAGCCCAGTTACATTGAAAAACAATGAATGATGA
CTCCAACAATCCCTGAGAAACTTCTGAAAAACTAGAAAACTATTTTAAAA
AACTATATTAGCAGTAGTATTTCAAGACCTGTGTCTCGGTGGCTCGGAAA
CTTGAAATCAATGGGGATTGAGAACTCCGCCCATCCCACCAAAATCTTCC
AAAATCTCCTGTTTGAGCGAGAAGGTATTTACGATGATAATTAGTCATTG
AATGAAAGATTCAAATTTATACAGGAAAGAGTAAAAAATTGAAAGATAAA
CTCACTTTTCAAAGAGAAAGAGACGAAGGAATAATCATAATTCATCCTTT
CCACATGTTATATAATCCTGTAATATTCCTTATCTTTCATTGAACTCATT
CAATCAATTTGTTATCATAACGTAAAGCATGAATGGCGCACCCTGTGGAC
CCTGTTTTGATAGTGAAATCCTCCTTAAGCTCTTATTAAGCCCTTCTAAT
CACGCATTATGAGTTTTTGAAAATGATCCGTGTGTCTGGATTTCTCATTC
CCCCTTTTTTCAATTGATTATATATTACATTGTGTAAGCCTGCGACACGT
AAACCCCTTCTTGATTTGCTGGGGCCTCAAAAGCCCTACACAAAGTCCTG
TACATTTCTTCTCCAATCTGAAGAACTATTGCAGTGATAATCATTTTCTA
AGCTTTTGAAAGAATATGCCTTGAAGCAGAGAGAAGCATCAAAGGATTTG
ATATTTGTAAAATATATAAGCTTTTTTATAAAGGCTGTTTTAATTTTTTC
GTGATTTTAAGGTTTAAATATTTGAAAAAATGTGACAAGCTCGAAATATG
AAATCAATCTGCTTTACACAAATCTCCATCAGCTTCAAGTTGGGGTGAAT
ACGTTAGATCTTCCAAATAAGAGGGAGGGAATATATTATCGCTATGGAAT
TTTTCTTCTATTCTTTCTCTTAAATGGACTTTGAACTTTCGAAAAGATAA
AACCTCAGTATTAAACAACTTTTTTTGTCATATCTTTCTTTCTTTTAATA
TCATATCTTTTTTTCACTGATACTTATCTCTTGGAATGTCAAGAGCAAGA
GATGATGTAACTTCTGTAAATATCCAATTCAAAACGTGACTTGATCCATG
CCAACTGTATTCCGTATCATTTATATGCTCGAATAAAATTATAAAGTGCC
CCTAAGTATAACCTTAAATTCAAGCTAACATATTTAATCTTCAGCATAAA
TATCATTTTCTTAACACTCTTTCAGCTCAAAACGGCAAAGCTCCTGCTCC
AGCAACTGAAGAGGAAGTGATCAAAACTCCCACCGCCGAGCCAGAGGCCC
CTGCTGCCGAAGCTCCTGCCGCCGAACCTGAAGCACCAGCAGCCGAACCA
GAGGCACCTGCCGCCGAACCAGAGGCTCCTGCCGCCGAACCAGAAGCACC
AGCAGCCGAACCAGAAGCACCAGCAGCCGAACCTGAAGCACCAGCAGCCG
AACCAGAAGCACCAACAGCCGAACCAGAGGCTCCTGCCGCCGAGCCTGAA
GCTCCTGCTGCTGAACCAAAAGCACCTGCTGCCGAGCCAGAGGCCCCAGC
AGCCGAACCAGAAGCCCCGAAAGTAGAGCCAGAAGCCCCAAAAGTAGAAC
AGACTGAATCTAATCCAACAGAGGAAGCAAAATCGAGTTAAAACAAGGGG
TGTTGTTAGTCTTCAGTTATCTTTTTTACAAAATGAAAATGTAGCTCAAA
GGTTAGAATAACCAAATATAGCGGAAGAGAATGTTTATCGTTGCTCGTGG
ATGACTATCAAAGATGAATTCCATCAATAAAACTGTTGAAAATGCTACAT
CAGTGGAAAAAACATTGTGAATAAATGAATTTCTAATTAAACAGAGAGAA
CGCTTGGTGATAGACTCACATAATGCATGCATAAACACGAACGTCGAAAA
TATTTGTGAGAATGGTCAGAGATCTCATAATTATGAAGTTCCTTCTTTCT
CAATGAAAATAACCTTATTTTTGTAAATAATAAACTTGAGTTTTAAAATC
AAAACACAGTCTAGTCTAGTCACGCAAAATCTTGGCTACAATCAATTCAT
CTGATTAGTCATTTTATTTTACCATTT

Coding sequence (CDS) from alignment at sc0000093:124998..128224-

>TCONS_00009390 ID=TCONS_00009390|Name=TCONS_00009390|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000093:124998..128224- (Clytia hemisphaerica)
ATGGGAAATTCAACAAGCAAAAACAAGACTAAGGAGAGTGCAGCTCAAAA
CGGCAAAGCTCCTGCTCCAGCAACTGAAGAGGAAGTGATCAAAACTCCCA
CCGCCGAGCCAGAGGCCCCTGCTGCCGAAGCTCCTGCCGCCGAACCTGAA
GCTCCTGCCGCCGAACCAGAAGCTCCTGCCGCCGAGCCTGAAGCTCCTGC
TGCTGAACCAAAAGCACCTGCTGCCGAGCCAGAGGCCCCAGCAGCCGAAC
CAGAAGCCCCGAAAGTAGAGCCAGAAGCCCCAAAAGTAGAACAGACTGAA
TCTAATCCAACAGAGGAAGCAAAATCGAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005259XLOC_005259Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009390-exon-sc0000093-1575043694:127978..128224TCONS_00009390-exon-sc0000093-1575043694:127978..128224Clytia hemisphaericaexon
TCONS_00009390-exon-sc0000093-1575043694:125743..125849TCONS_00009390-exon-sc0000093-1575043694:125743..125849Clytia hemisphaericaexon
TCONS_00009390-exon-sc0000093-1575043694:125680..125700TCONS_00009390-exon-sc0000093-1575043694:125680..125700Clytia hemisphaericaexon
TCONS_00009390-exon-sc0000093-1575043694:124998..125595TCONS_00009390-exon-sc0000093-1575043694:124998..125595Clytia hemisphaericaexon
TCONS_00009390-exon-sc0000093-1510915933:127978..128224TCONS_00009390-exon-sc0000093-1510915933:127978..128224Clytia hemisphaericaexon
TCONS_00009390-exon-sc0000093-1510915933:125743..125849TCONS_00009390-exon-sc0000093-1510915933:125743..125849Clytia hemisphaericaexon
TCONS_00009390-exon-sc0000093-1510915933:125680..125700TCONS_00009390-exon-sc0000093-1510915933:125680..125700Clytia hemisphaericaexon
TCONS_00009390-exon-sc0000093-1510915933:124998..125595TCONS_00009390-exon-sc0000093-1510915933:124998..125595Clytia hemisphaericaexon
TCONS_00009390-exon-sc0000093-1491911889:127978..128224TCONS_00009390-exon-sc0000093-1491911889:127978..128224Clytia hemisphaericaexon
TCONS_00009390-exon-sc0000093-1491911889:125743..125849TCONS_00009390-exon-sc0000093-1491911889:125743..125849Clytia hemisphaericaexon
TCONS_00009390-exon-sc0000093-1491911889:125680..125700TCONS_00009390-exon-sc0000093-1491911889:125680..125700Clytia hemisphaericaexon
TCONS_00009390-exon-sc0000093-1491911889:124998..125595TCONS_00009390-exon-sc0000093-1491911889:124998..125595Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009390-proteinTCONS_00009390-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:124998..128224 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35244	0	2.1267	1.85328	0.372701	0	0.561695	1.57967	1.34977	6.83412	0.967465	0.441607	1.73676	1.10619	3.57538	1.44468	19.8463	16.7075	1.42669	1.29015	83.6877	85.8806	62.5651	85.1918	56.3126	41.6012	53.307	58.1976	27.2545	17.2207
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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