TCONS_00009404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009404
Unique NameTCONS_00009404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009404 ID=TCONS_00009404|Name=TCONS_00009404|organism=Clytia hemisphaerica|type=transcript|length=1394bp
AGTGTCAAATATGATCAATTTCTATAGAAGAAGGAAGACTGCAAAACAAT
TAGAAGAGAAAGAAAATGACTCGACCAATAAAGTAAAGAAGATAAAAAGC
AAAGATATGATTCCAATAGCTTATCAAATACCGAAATGTGAGCCTCGTTC
TACCATCATATCTATCGACAAAGCACAGACTTCTGAAGGCTATACTCTGT
TTCCACATTGCATCATGGCGGATAGATGTGGTGGTTGCTGTAGAGAAGGG
AATATGGACTGTGTGGCAGACGAATTGAAAACGAAATCGGTTTACGTTTA
TAAAGTTGCAAAGGGATTCACCGCAGacaaaatCACCAGTCTACAAAAGG
TGAATTACATCAACCACGAGTCATGCAAATGTAAACATAAGTTGTATATC
AACCAATAGGATTCATTTCGGAACCTTGCTTAAAAGAATACGTACAACCT
CCTCAAAACAATACATCTATAAATCAAGAATTTGGGTTTTATCCAAAACT
TTGGAAGTAGAAGAACCAGGACATCACAACCGCGCCTAGTCAtggtatgc
accattgcaatgtcttccacggacccaacagctgattggttgcaagtgac
gtattgactcaATGTCAGAAGACAATGCAAttttgcatatcatgaattaa
ccTTATTCTTTTGGCTATTTAAGATAAATAAACTGAAAGTTTCATTTATT
TTTGGAACTGCTcgtttcattgttttcatgTGCAATATCACAATTTTTAG
TACAAGTATTCGAAATAGATATGAAattcacaaaagaaaaatttcatgtt
tctgtCTATGCATAATTTGGGTGGGATGGACCGTAAATCCACTCATTAGA
GTGAGAATTTTGCGTTTTATTAGACCGAGCCTTGTCTGAAAACGACAGGA
TCTGATGTTAAAGATGAAGGATATACAACTAGTCAATTTGAAATGATAGC
TTGAATGTGACGAGGTTTTATTCCACAaagtaaagattttttaaaagcct
atatttacaaaaaatattgaaaaagtcTTTAGTTTAGTTAATAAGGTCAC
TAAAATAATGCAACTACTTTTGCTTTTGTCTTTAAAATATTGagtacttt
attttttttggtatCAAAACATTCGACCAACAAGGTTCCCAATACAGCAA
TACTCTTCAAACTGAACGGTGTGAATATTCCCAAGTGTCGTATGTCATGC
AGTTACATAATGGTCCCAAAAGAGTGAAATAAACGAATGAATACAATCAC
TTACGAGTGCAAATGTTGACCGTATAAACTTTTtgttccatttttcattt
ttgtcaaaCCTGTGCAACTTTTTACTTTCCTTTGAATTTACCACCTGGTT
TAGCCTTCTTCTTAGATGCCGGTGTCTTTTTGTTATCTTCGCTC
Run BLAST on NCBI

protein sequence of TCONS_00009404-protein

>TCONS_00009404-protein ID=TCONS_00009404-protein|Name=TCONS_00009404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
VSNMINFYRRRKTAKQLEEKENDSTNKVKKIKSKDMIPIAYQIPKCEPRS
TIISIDKAQTSEGYTLFPHCIMADRCGGCCREGNMDCVADELKTKSVYVY
KVAKGFTADKITSLQKVNYINHESCKCKHKLYINQ
Run BLAST on NCBI

transcript from alignment at sc0000093:419933..423905-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009404 ID=TCONS_00009404|Name=TCONS_00009404|organism=Clytia hemisphaerica|type=transcript|length=3973bp|location=Sequence derived from alignment at sc0000093:419933..423905- (Clytia hemisphaerica)
AGTGTCAAATATGATCAATTTCTATAGAAGAAGGAAGACTGCAAAACAAT
TAGAAGGTATTTAACGATTTCCAATAAAGGGATCGCGAAAATTCAAGAAA
AGACTTGTAATCGATGTACTTTTTAACATTATCTGGCTGCCAGACCTTGG
CTAGTAGGAATCATGGAAAAGTCCGATAACCCATAAATTACTTTCAGTTT
TACAACCGAAGGCTAGAAGCGAATGTCCAACCTTTTCAAAGCAAGCAAAA
GTTATACCTTAAAATTTGCGGCAAAATTCAGATGCTCGATAAAATTTAAC
ACTTTCTTTGTATTCATGTTTTATGCTTTTCTAACTCTGGCGGTAAATGC
TTCTACCAATCAAGCGTTTGTATGAAAACTAAGTGCAACTCGTGTAGGAA
ATAAATGGTTTCAAATCCTACAAAAAAGATTCGACTCTAGCCTTCGGATA
TACCTTATTGAGGCCAACTGTGCATAAATAACATTGATAGCATTGTGCAC
TTTTGGCTAAAATCATCAAGTTTGGCATACACCTACCCTACTAAACGGTT
CTAGCCCTGAATTTACTTAAGTTTTTCCCATTTTTCCACTAATGGTAAAT
TTACAATCAATTGACGCTCTCTAATTCGATGTTTTTCTATTGGATATGCT
CCATTATTGGATGATAAAGAAATACTCATAAACGATACTCGACCATTCGA
TACGCTCCACATTCAATGAAATGGATCCAATTCTCCATTAATATTGAATT
ATAGAGCAGCAACTGTAGTTTCTAGGCCTCTCGCTCGCTTAATTCTTTGC
TCTTCTGCCATAAAAGTACAATGGGCTCTTCCAGAAAAAAATTGTACATG
GGGGGTGGAGGATATTTTGTCCGGGGGGTAGCAAAAAATCATCAAAATTT
GCCTTGTCCGGGGTAAATTTGCTCTGTCCGGGGGTAATTTGGGGTGTTCG
GGGGGTCAGCAGATGCTTGTCCGGGGGGTAAAACCTATTGTCCGGAGGGC
CAAAAGTCACCCTGTTCGGGGGGTAAATCACTAAAAATTGTTAGATCTTC
CACCCCCCATGTACAATTTTTTTCTGGAAGAGCCCAATGGAGTCTCAATA
ACTCGAGCAAGCATTGAGAACAGAAATTTGTTCGAGCTAAGAAAGTTTCG
ACTTATGGAGTAAGGGTTATCGAGGCATTGTTAACTGAAGGGACCATGAA
ATTTATTCGAGTTAAGAAAGTTTCGACTTATGGAGTAAGGGTTATCGAGG
CATTGTTAACTGAAGGGACCATGAAATTTGTTCGAGCTAAGAAAGTTTCG
ACTTATGGAGTAAGGGTTATCGAGGCATTGTTAACTGAAGGGACCATGAA
ATTTGTTCGAGCTAAGAAAGTTTCGACTTATGGAGTAAGGGTTATCGAGG
CATTGTTAACTGAAGGGACCATGAAATTTGTTCGAGCTAAGAAAGTTTCG
ACTTATGGAGTAAGGGTTATCGAGGCATTGTTAACTGAAGGGACCATGAA
ATTTATTCGAGTTAAGAAGGTATGTTAACTAAAGGAACGATTGTTCGAGT
ATTCATGTTATGGAGTTCCAGTTAAGAAACTCCACTGTATTTCTTGAAGT
TGTAACTAATGATTTGTTTACCTTTAGAGAAAGAAAATGACTCGACCAAT
AAAGTAAAGAAGATAAAAAGCAAAGATATGATTCCAATAGGTAATAATGT
TTGTTGCGATTACCTAGTGTAAACCCTTAAGGGGGAAATTTTGGCGGGAA
TTTAATTTGGCAAATAGCCGAATTTTTTTTTTCCAGAGGAATTTAATTTG
ACGGATAACTTGAAAAATTAAACTTGGCGGGAATTAAATTGGTGGATGAA
GGACATTTTTGTCAAATATGAAATCATTTGCACAACATTTTCAAAGAATA
TGAACAAAGATTTAAGGAAAAACTTTCCATAGTCTCGTGTGTATTAGAGA
TCGAAATTCAATGTTGTGGCTCTGTAAGATAGGAATCAAAAGCGTCAAAA
CAAGAGATCGTCTGTTAAGTTAAAATGCTTGCAAATTAAGAATTTCCAGC
ACCATTTTATTAGCTCTTTTATAAAAAATGCTCAGATGGCGAGTTCGAAA
ATACGGGTTTCATATTTTTTCATAGCTTATCAAATACCGAAATGTGAGCC
TCGTTCTACCATCATATCTATCGACAAAGCACAGACTTCTGAAGGCTATA
CTCTGTTTCCACATTGCATCATGGCGGATAGATGTGGTGGTTGCTGTAGA
GAAGGGAATATGGACTGTGTGGCAGACGAATTGAAAACGAAATCGGTTTA
CGTTTATAAAGTTGCAAAGGGATTCACCGCAGGTAGGATGTGGATTATCT
TTTCTCTAACATTGGGCGAAGAAAAGTGAAAAAAAAATTCCCTGGCATGA
TAATACAGCGGAGTCTCCATAACTCGAATACGCCCGGGGAACACAAATTT
GTTCGAGATAAGGAAATTTCGAGTTGTTGAATAAGGTTTGTAAAGCACTG
TTAACTGAAAGATTGCTCGAGTAAAGGGGACTTCCAAGTTATAAAGGTAC
GAAGTTATAGAGTTATCTGTAAAATCTACTATATTCCAACCAAATCAATA
GACAAAGGACAATTGTCCCAATAATCTTAATCAGAGGATTGATTTTTAAT
AGTTGTGGGAAAAGACGAGATTCCGAAAAGGTGTCTCGTACTAGACTTTC
TCAGACTTTTCACAAAGTTGATTTTCAAAAGGCTACTTTAGAAGATGTTG
CTGTTGATGTTGATGTTGTTCAAGCAAATTCTAATGCTTTCTAAAATTCC
AAATACTTTCTAGAACTGTATAAGAAAGAAAGAACAACTGGATTAGTACT
TGGCATCGGCAAATTTTAAATTTTAAATATTGTAATTTTGTTTCTTTTTT
TTCAGACAAAATCACCAGTCTACAAAAGGTGAATTACATCAACCACGAGT
CATGCAAATGTAAACATAAGTTGTATATCAACCAATAGGATTCATTTCGG
AACCTTGCTTAAAAGAATACGTACAACCTCCTCAAAACAATACATCTATA
AATCAAGAATTTGGGTTTTATCCAAAACTTTGGAAGTAGAAGAACCAGGA
CATCACAACCGCGCCTAGTCATGGTATGCACCATTGCAATGTCTTCCACG
GACCCAACAGCTGATTGGTTGCAAGTGACGTATTGACTCAATGTCAGAAG
ACAATGCAATTTTGCATATCATGAATTAACCTTATTCTTTTGGCTATTTA
AGATAAATAAACTGAAAGTTTCATTTATTTTTGGAACTGCTCGTTTCATT
GTTTTCATGTGCAATATCACAATTTTTAGTACAAGTATTCGAAATAGATA
TGAAATTCACAAAAGAAAAATTTCATGTTTCTGTCTATGCATAATTTGGG
TGGGATGGACCGTAAATCCACTCATTAGAGTGAGAATTTTGCGTTTTATT
AGACCGAGCCTTGTCTGAAAACGACAGGATCTGATGTTAAAGATGAAGGA
TATACAACTAGTCAATTTGAAATGATAGCTTGAATGTGACGAGGTTTTAT
TCCACAAAGTAAAGATTTTTTAAAAGCCTATATTTACAAAAAATATTGAA
AAAGTCTTTAGTTTAGTTAATAAGGTCACTAAAATAATGCAACTACTTTT
GCTTTTGTCTTTAAAATATTGAGTACTTTATTTTTTTTGGTATCAAAACA
TTCGACCAACAAGGTTCCCAATACAGCAATACTCTTCAAACTGAACGGTG
TGAATATTCCCAAGTGTCGTATGTCATGCAGTTACATAATGGTCCCAAAA
GAGTGAAATAAACGAATGAATACAATCACTTACGAGTGCAAATGTTGACC
GTATAAACTTTTTGTTCCATTTTTCATTTTTGTCAAACCTGTGCAACTTT
TTACTTTCCTTTGAATTTACCACCTGGTTTAGCCTTCTTCTTAGATGCCG
GTGTCTTTTTGTTATCTTCGCTC

Coding sequence (CDS) from alignment at sc0000093:419933..423905-

>TCONS_00009404 ID=TCONS_00009404|Name=TCONS_00009404|organism=Clytia hemisphaerica|type=CDS|length=1632bp|location=Sequence derived from alignment at sc0000093:419933..423905- (Clytia hemisphaerica)
ACAAAATCACCAGTCTACAAAAGGTGAATTACATCAACCACGAGTCATGC
AAATGTAAACATAAGTTGTATATCAACCAATAGCTTATCAAATACCGAAA
TGTGAGCCTCGTTCTACCATCATATCTATCGACAAAGCACAGACTTCTGA
AGGCTATACTCTGTTTCCACATTGCATCATGGCGGATAGATGTGGTGGTT
GCTGTAGAGAAGGGAATATGGACTGTGTGGCAGACGAATTGAAAACGAAA
TCGGTTTACGTTTATAAAGTTGCAAAGGGATTCACCGCAGAGAAAGAAAA
TGACTCGACCAATAAAGTAAAGAAGATAAAAAGCAAAGATATGATTCCAA
TAGGTGTCAAATATGATCAATTTCTATAGAAGAAGGAAGACTGCAAAACA
ATTAGAAGACAAAATCACCAGTCTACAAAAGGTGAATTACATCAACCACG
AGTCATGCAAATGTAAACATAAGTTGTATATCAACCAATAGCTTATCAAA
TACCGAAATGTGAGCCTCGTTCTACCATCATATCTATCGACAAAGCACAG
ACTTCTGAAGGCTATACTCTGTTTCCACATTGCATCATGGCGGATAGATG
TGGTGGTTGCTGTAGAGAAGGGAATATGGACTGTGTGGCAGACGAATTGA
AAACGAAATCGGTTTACGTTTATAAAGTTGCAAAGGGATTCACCGCAGAG
AAAGAAAATGACTCGACCAATAAAGTAAAGAAGATAAAAAGCAAAGATAT
GATTCCAATAGGTGTCAAATATGATCAATTTCTATAGAAGAAGGAAGACT
GCAAAACAATTAGAAGACAAAATCACCAGTCTACAAAAGGTGAATTACAT
CAACCACGAGTCATGCAAATGTAAACATAAGTTGTATATCAACCAATAGC
TTATCAAATACCGAAATGTGAGCCTCGTTCTACCATCATATCTATCGACA
AAGCACAGACTTCTGAAGGCTATACTCTGTTTCCACATTGCATCATGGCG
GATAGATGTGGTGGTTGCTGTAGAGAAGGGAATATGGACTGTGTGGCAGA
CGAATTGAAAACGAAATCGGTTTACGTTTATAAAGTTGCAAAGGGATTCA
CCGCAGAGAAAGAAAATGACTCGACCAATAAAGTAAAGAAGATAAAAAGC
AAAGATATGATTCCAATAGGTGTCAAATATGATCAATTTCTATAGAAGAA
GGAAGACTGCAAAACAATTAGAAGACAAAATCACCAGTCTACAAAAGGTG
AATTACATCAACCACGAGTCATGCAAATGTAAACATAAGTTGTATATCAA
CCAATAGCTTATCAAATACCGAAATGTGAGCCTCGTTCTACCATCATATC
TATCGACAAAGCACAGACTTCTGAAGGCTATACTCTGTTTCCACATTGCA
TCATGGCGGATAGATGTGGTGGTTGCTGTAGAGAAGGGAATATGGACTGT
GTGGCAGACGAATTGAAAACGAAATCGGTTTACGTTTATAAAGTTGCAAA
GGGATTCACCGCAGAGAAAGAAAATGACTCGACCAATAAAGTAAAGAAGA
TAAAAAGCAAAGATATGATTCCAATAGGTGTCAAATATGATCAATTTCTA
TAGAAGAAGGAAGACTGCAAAACAATTAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005266XLOC_005266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009404-exon-sc0000093-1575043694:423850..423905TCONS_00009404-exon-sc0000093-1575043694:423850..423905Clytia hemisphaericaexon
TCONS_00009404-exon-sc0000093-1575043694:422216..422278TCONS_00009404-exon-sc0000093-1575043694:422216..422278Clytia hemisphaericaexon
TCONS_00009404-exon-sc0000093-1575043694:421574..421780TCONS_00009404-exon-sc0000093-1575043694:421574..421780Clytia hemisphaericaexon
TCONS_00009404-exon-sc0000093-1575043694:419933..421000TCONS_00009404-exon-sc0000093-1575043694:419933..421000Clytia hemisphaericaexon
TCONS_00009404-exon-sc0000093-1510915933:423850..423905TCONS_00009404-exon-sc0000093-1510915933:423850..423905Clytia hemisphaericaexon
TCONS_00009404-exon-sc0000093-1510915933:422216..422278TCONS_00009404-exon-sc0000093-1510915933:422216..422278Clytia hemisphaericaexon
TCONS_00009404-exon-sc0000093-1510915933:421574..421780TCONS_00009404-exon-sc0000093-1510915933:421574..421780Clytia hemisphaericaexon
TCONS_00009404-exon-sc0000093-1510915933:419933..421000TCONS_00009404-exon-sc0000093-1510915933:419933..421000Clytia hemisphaericaexon
TCONS_00009404-exon-sc0000093-1491911889:423850..423905TCONS_00009404-exon-sc0000093-1491911889:423850..423905Clytia hemisphaericaexon
TCONS_00009404-exon-sc0000093-1491911889:422216..422278TCONS_00009404-exon-sc0000093-1491911889:422216..422278Clytia hemisphaericaexon
TCONS_00009404-exon-sc0000093-1491911889:421574..421780TCONS_00009404-exon-sc0000093-1491911889:421574..421780Clytia hemisphaericaexon
TCONS_00009404-exon-sc0000093-1491911889:419933..421000TCONS_00009404-exon-sc0000093-1491911889:419933..421000Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009404-proteinTCONS_00009404-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:419933..423905 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0833986	0	0.051286	0.0535185	0.306133	0.470292	12.6387	12.0363	1.75397	3.33237	2.11826	0.754054	1.02488	1.02546	0.737889	1.06093	1.21638	1.9448	0.0448951	0.091216	0.901864	0.836163	0.838052	0.966595	0.632288	1.36463	12.7337	8.31529	0.314505	0.136715
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000072PDGF/VEGF_dom
IPR029034Cystine-knot_cytokine
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0008083 growth factor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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