TCONS_00009406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009406
Unique NameTCONS_00009406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009406 ID=TCONS_00009406|Name=TCONS_00009406|organism=Clytia hemisphaerica|type=transcript|length=571bp
TTGTGAAAAGTCAAGAACACTTCTTATACGACGCTCTCTCTAAAGTTTAT
CCAGCTGTACAACCACTCAAAACGCTAATATAGTAGTTTGATCTAAACGA
TTCTTAgttcattttcaacttttaaaactAGCTTAGTACAGTACTTCGGA
GAAAGAGAATCTTTAAAAACAATCATGAAGTTTTTGGCTTTGTTTTTACT
TACCGCATGCATTTTGAAATTCGGTTATTCTGATATATTGGCTGAAGAAT
TTGAAGATGAGGATACGGGATCAGGAGATGGAGGTCTCAGCTGTGAAGGG
GAGAGATATGTATGTTTGAGAAAAGCTGGATATGATTGGTTTGCAAGAAG
ACAATGTGAATCTTCATATGGAAAATGTGTTGCTGAAAGATATGTGAAGG
AGGTTCAAAGATATCGGTACTGTGTCAATGTGtgtcAAAGACAATACAAT
GCATGCAAATACAACATTCTCAAATGCAACTACCACTTCTATATATGCAA
ATTTAGATgttaaaagaatattttaataTCATTTCTTCACtgcaaaagaa
aattaaagataTATCCAAATC
Run BLAST on NCBI

protein sequence of TCONS_00009406-protein

>TCONS_00009406-protein ID=TCONS_00009406-protein|Name=TCONS_00009406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MKFLALFLLTACILKFGYSDILAEEFEDEDTGSGDGGLSCEGERYVCLRK
AGYDWFARRQCESSYGKCVAERYVKEVQRYRYCVNVCQRQYNACKYNILK
CNYHFYICKFRC
Run BLAST on NCBI

transcript from alignment at sc0000093:426381..428587-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009406 ID=TCONS_00009406|Name=TCONS_00009406|organism=Clytia hemisphaerica|type=transcript|length=2207bp|location=Sequence derived from alignment at sc0000093:426381..428587- (Clytia hemisphaerica)
TTGTGAAAAGTCAAGAACACTTCTTATACGACGCTCTCTCTAAAGTTTAT
CCAGCTGTACAACCACTCAAAACGCTAATATAGTAGTTTGATCTAAACGA
TTCTTAGTTCATTTTCAACTTTTAAAACTAGCTTAGTACAGTACTTCGGA
GAAAGAGAATCTTTAAAAACAATCATGAAGTTTTTGGCTTTGTTTTTACT
TACCGCATGCATTTTGAAATTCGGTTATTCTGATATATTGGCTGAAGGTA
GGTGCTAGCTTTCAAACCTTTCCTTGATAACAGACGTGGCTAATCTTATT
TTATAGGTGGACGTTAGTTACATGGGGTTTTCTAGAGGTTGTTGTTAAAT
TATACATGTTTTAAAGGCGGGTTACACGTTTTTTATAAGAACAAACTATA
TAAGAACATAAGGCTTCGAGGCCCAAAAATTTAAGAACATTCTAAGAACA
TTCTAAGGCTTTGGAGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCTTAAAAACATGCATTTTCTTAAGAA
ATTACATCAAAATGCTCAAAAAATGCTGAAAATAAGAACATTTTAAGAAC
ATTTTTAGGCTTCAAATCCAAAAAACATCCGAAGGCTTCGAAAATTTTTG
ACGTTCTTATAAAAAAAAACGTGTATTAGCGTATTGAAGTCTTACGGCTG
CTAAATTAATTTTTGATCGTTTAGAATTTGAAGATGAGGATACGGGATCA
GGAGATGGAGGTCTCAGCGTAAGTCACATTTCAATGATAAAAACACATGT
CGTCGTTTAGAAATCGAGTGTCCCCCCCGGGCCTAAAAGATTGACAGAAT
TAATTGCGATTGACGTTAAAAGAGGGCAATATATTTAATGAGGTTGATAG
GTGTATGAAAACAACTAAGGGCGAAAAGTAGTCCGTCTATGAAGCTAAAA
GAAAATCGAGAGTTTTTCAATTTATGGGATAGCTATTTTAAAATGATTTT
TATAGTGTAGTAATCAGTGTCGTAAAACTTATTTTTTTTCAATCTACTGT
ATAGTGTGAAGGGGAGAGATATGTATGTTTGAGAAAAGCTGGATATGATT
GGTTTGCAAGAAGACAATGTGAATCTTCATATGGAAAATGTGTTGCTGAA
AGATATGTGAAGGAGGTTCAAAGATATCGGTACTGTGTCAATGTGGTAAG
TAAATTGTTCTAAATATTACCAACAGAATACTGAAGTGATTAGCCTTTGA
ATATTTAAATGTTTAGTCTAAGTCTTGCATGATTCCTGGAAAACCCCACT
GGTGAATTCACATATTTTTGCTATGTAATGTACTTTTGATCGAGTTTTTT
TACAAGTACAGAAATATTATCATTGATTGTGGATGTAAAGTTCTTATAGT
GTAGTTCTGGTAATAGTTTAGGCTGCGTGAGATTGTGTAATAGAATAAAG
GTACGTTTCATCTTGGGATTTAATGATCAAAATACAATGAGTGTCTAAAC
AACTTTTAAAGCAAAAATATATGGTTGGAAATTCAATTCTCATTGAATTT
ACTGAGGGGGGGGGGGGGGGGGAGGGGGAGGGGAAGGGGAAGGGGTCCAC
ACCATTCCGCAGGGGAGATGACCGCTCAAACCTGGTACCCATTTGTTGGC
CTAGGGGTCCCAAGGTCTAGGTTACATAGCTTCAGCCATTAGGGCTTAAA
ACTTTCGATTTGCCACACCACCCCTTCACAATTGGATGTTTTTTACCATT
AAAGGCGGATTTCCCTTTCCCCAAGAGGCCAGTTGTAAAGGCACAAGCTT
AAGAAAGTGTGCTAGCGAGGTCTTTGTTCGTAATTCCATAGGTCATGTCT
CCCCTATAAACCTTTTTGGTCAAATTTGACTGAAAATATAATGATTTATT
TTCTCCTTTTAAAAGATTGCTTAAAATTTAATCTTAGAAATCTTAACATT
ATCTTTTTTTATTTTTAGTGTCAAAGACAATACAATGCATGCAAATACAA
CATTCTCAAATGCAACTACCACTTCTATATATGCAAATTTAGATGTTAAA
AGAATATTTTAATATCATTTCTTCACTGCAAAAGAAAATTAAAGATATAT
CCAAATC

Coding sequence (CDS) from alignment at sc0000093:426381..428587-

>TCONS_00009406 ID=TCONS_00009406|Name=TCONS_00009406|organism=Clytia hemisphaerica|type=CDS|length=1356bp|location=Sequence derived from alignment at sc0000093:426381..428587- (Clytia hemisphaerica)
TGTCAAAGACAATACAATGCATGCAAATACAACATTCTCAAATGCAACTA
CCACTTCTATATATGCAAATTTAGATGTTAATGTGAAGGGGAGAGATATG
TATGTTTGAGAAAAGCTGGATATGATTGGTTTGCAAGAAGACAATGTGAA
TCTTCATATGGAAAATGTGTTGCTGAAAGATATGTGAAGGAGGTTCAAAG
ATATCGGTACTGTGTCAATGTGAATTTGAAGATGAGGATACGGGATCAGG
AGATGGAGGTCTCAGCATGAAGTTTTTGGCTTTGTTTTTACTTACCGCAT
GCATTTTGAAATTCGGTTATTCTGATATATTGGCTGAAGTGTCAAAGACA
ATACAATGCATGCAAATACAACATTCTCAAATGCAACTACCACTTCTATA
TATGCAAATTTAGATGTTAATGTGAAGGGGAGAGATATGTATGTTTGAGA
AAAGCTGGATATGATTGGTTTGCAAGAAGACAATGTGAATCTTCATATGG
AAAATGTGTTGCTGAAAGATATGTGAAGGAGGTTCAAAGATATCGGTACT
GTGTCAATGTGAATTTGAAGATGAGGATACGGGATCAGGAGATGGAGGTC
TCAGCATGAAGTTTTTGGCTTTGTTTTTACTTACCGCATGCATTTTGAAA
TTCGGTTATTCTGATATATTGGCTGAAGTGTCAAAGACAATACAATGCAT
GCAAATACAACATTCTCAAATGCAACTACCACTTCTATATATGCAAATTT
AGATGTTAATGTGAAGGGGAGAGATATGTATGTTTGAGAAAAGCTGGATA
TGATTGGTTTGCAAGAAGACAATGTGAATCTTCATATGGAAAATGTGTTG
CTGAAAGATATGTGAAGGAGGTTCAAAGATATCGGTACTGTGTCAATGTG
AATTTGAAGATGAGGATACGGGATCAGGAGATGGAGGTCTCAGCATGAAG
TTTTTGGCTTTGTTTTTACTTACCGCATGCATTTTGAAATTCGGTTATTC
TGATATATTGGCTGAAGTGTCAAAGACAATACAATGCATGCAAATACAAC
ATTCTCAAATGCAACTACCACTTCTATATATGCAAATTTAGATGTTAATG
TGAAGGGGAGAGATATGTATGTTTGAGAAAAGCTGGATATGATTGGTTTG
CAAGAAGACAATGTGAATCTTCATATGGAAAATGTGTTGCTGAAAGATAT
GTGAAGGAGGTTCAAAGATATCGGTACTGTGTCAATGTGAATTTGAAGAT
GAGGATACGGGATCAGGAGATGGAGGTCTCAGCATGAAGTTTTTGGCTTT
GTTTTTACTTACCGCATGCATTTTGAAATTCGGTTATTCTGATATATTGG
CTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005268XLOC_005268Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009406-exon-sc0000093-1575043694:428341..428587TCONS_00009406-exon-sc0000093-1575043694:428341..428587Clytia hemisphaericaexon
TCONS_00009406-exon-sc0000093-1575043694:427720..427763TCONS_00009406-exon-sc0000093-1575043694:427720..427763Clytia hemisphaericaexon
TCONS_00009406-exon-sc0000093-1575043694:427293..427433TCONS_00009406-exon-sc0000093-1575043694:427293..427433Clytia hemisphaericaexon
TCONS_00009406-exon-sc0000093-1575043694:426381..426519TCONS_00009406-exon-sc0000093-1575043694:426381..426519Clytia hemisphaericaexon
TCONS_00009406-exon-sc0000093-1510915933:428341..428587TCONS_00009406-exon-sc0000093-1510915933:428341..428587Clytia hemisphaericaexon
TCONS_00009406-exon-sc0000093-1510915933:427720..427763TCONS_00009406-exon-sc0000093-1510915933:427720..427763Clytia hemisphaericaexon
TCONS_00009406-exon-sc0000093-1510915933:427293..427433TCONS_00009406-exon-sc0000093-1510915933:427293..427433Clytia hemisphaericaexon
TCONS_00009406-exon-sc0000093-1510915933:426381..426519TCONS_00009406-exon-sc0000093-1510915933:426381..426519Clytia hemisphaericaexon
TCONS_00009406-exon-sc0000093-1491911889:428341..428587TCONS_00009406-exon-sc0000093-1491911889:428341..428587Clytia hemisphaericaexon
TCONS_00009406-exon-sc0000093-1491911889:427720..427763TCONS_00009406-exon-sc0000093-1491911889:427720..427763Clytia hemisphaericaexon
TCONS_00009406-exon-sc0000093-1491911889:427293..427433TCONS_00009406-exon-sc0000093-1491911889:427293..427433Clytia hemisphaericaexon
TCONS_00009406-exon-sc0000093-1491911889:426381..426519TCONS_00009406-exon-sc0000093-1491911889:426381..426519Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009406-proteinTCONS_00009406-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:426381..428587 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0980048	0.19114	0.110966	0.434252	0	0.104439	0.630003	0.471841	0.0825868	0.306891	0	0.261083	61.8557	38.2448	33.4459	56.3173	10.0058	9.12446	156.064	93.4286	7.2015	6.37822	51.578	30.9548	25.0432	34.0891	1.47822	1.43418	157.401	230.188
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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