TCONS_00009426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009426
Unique NameTCONS_00009426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009426 ID=TCONS_00009426|Name=TCONS_00009426|organism=Clytia hemisphaerica|type=transcript|length=523bp
TGATTATTTCCCCCCTCGGTTCCGGCATCCTGGCAAGATGTTCACATGAG
ATCGACCCGTTGATCACGAAAATCCTTGACCGTTCATTATCGAATTCTCG
AAGTGAAGTGAAGACagcgaagaagaagaagaaaaaagataagTACATTT
CTATCTTTTTGTATCTGAAAAGTCATGGCAGATCATGATTATGCTAACAC
TGAAGTCAGGGTAGAAACGACAGAGACTAATGAAACAACTAATAATTCTG
TCCAAACTAAAGATATCATCGAAGGGTTAAAACCTTACCTTCTTGCTATG
AGGGCTGATATCTTAAAGGATGTTCACGAACTCCTTCCAACATCCAGCGA
AGACTCTATCTCAATTGCGGCAGCCTCTGAATTTTCTCNAGCCCTGATac
ttatgttttctgaaaattgaagtcattaataaaaaaattatccaggaaca
aaagtgaaattcaaaactttattttttccacaTTTTTTCACCTATTTGGG
TGACATTACCAGACTCATGCTCA
Run BLAST on NCBI

transcript from alignment at sc0000093:268808..269330

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009426 ID=TCONS_00009426|Name=TCONS_00009426|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at sc0000093:268808..269330 (Clytia hemisphaerica)
TGAGCATGAGTCTGGTAATGTCACCCAAATAGGTGAAAAAAtgtggaaaa
aataaagttttgaatttcacttttgttcctggataatttttttattaatg
acttcaattttcagaaaacataagtATCAGGGCTNGAGAAAATTCAGAGG
CTGCCGCAATTGAGATAGAGTCTTCGCTGGATGTTGGAAGGAGTTCGTGA
ACATCCTTTAAGATATCAGCCCTCATAGCAAGAAGGTAAGGTTTTAACCC
TTCGATGATATCTTTAGTTTGGACAGAATTATTAGTTGTTTCATTAGTCT
CTGTCGTTTCTACCCTGACTTCAGTGTTAGCATAATCATGATCTGCCATG
ACTTTTCAGATACAAAAAGATAGAAATGTActtatcttttttcttcttct
tcttcgctGTCTTCACTTCACTTCGAGAATTCGATAATGAACGGTCAAGG
ATTTTCGTGATCAACGGGTCGATCTCATGTGAACATCTTGCCAGGATGCC
GGAACCGAGGGGGGAAATAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005282XLOC_005282Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009426-exon-sc0000093-1491911889:268808..269330TCONS_00009426-exon-sc0000093-1491911889:268808..269330Clytia hemisphaericaexon
TCONS_00009426-exon-sc0000093-1510915933:268808..269330TCONS_00009426-exon-sc0000093-1510915933:268808..269330Clytia hemisphaericaexon
TCONS_00009426-exon-sc0000093-1575043694:268808..269330TCONS_00009426-exon-sc0000093-1575043694:268808..269330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:268808..269330 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.451946	0.771257	0.767574	0.87611	1.79767	2.01828	0.776848	2.66765	2.90346	2.50386	2.66323	4.83811	1.47611	3.25811	0.178631	0.22276	0	0.617406	0.240214	0.125683	0.367844	0.799264	0.453115	0.668864	6.77723	7.34198	1.32678	1.15739	1.15686	0.788984
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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