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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009439 ID=TCONS_00009439|Name=TCONS_00009439|organism=Clytia hemisphaerica|type=transcript|length=1745bp
CATTTAGAGCGCAAGAAAAAGTGTCAACATCTGAGTGTGGTGTTCTGGAT
ATGAATGCTTTATCAGATCGTACTATTGACGAGGAGAGTTTTTGTTCTGA
CGCCTTCAACCCGAGAAGTATTTCATCCTTAATTCCGAAAGCTCGAAAAC
AGAGCAAGAAAACGTATTCGAAACGAAAGTATACGTTGAATTCACTGGAC
GAAGAAGAAGCTTTTGAAGATCGATTCCGAAAAATACACAAGGACACGGT
ACAACACCCTTCTGTCCATCGATCAAGCCACAAGCACCATCACCACAGGA
AATCACGGCGTCACAGCAAAGGACACCGCAGTAAAGGACGTAGCAAGAAG
CCAGACATGGAAACGTTACCAGAACTTACGGAAGCCGAAGAAACTGTACT
GGATACAAACTCAACACTAACGCACGCTGGAAATGCTAAAGTTACAACAT
CTACAAGCGGCAATCACCTTGACATACCGGACGGAGGTCCACCGAGTGTG
CCTGACGTCGATACCGCCGCAGCGGAACACAGCGACGCCGAAAGCACCGA
AGGAATTGTATTTCACGTCCAACAACCCAACGAAAAGAACCCTCTTCTAG
AGGAAGAGGATCCGTACTTCCCGACTTTACCGAGCTACAGTGATTCTGGT
CCGTATCTCTCTAAATATGGAAATCAACCCATCGTAGATTACCGGGAACC
GAAACAATTTACGGAAAGAGATAAAGAAGACTTACAGGCGGCCAAAAGAT
GGCGGTCTTTTTCAATCGAAAGCGCAGGCGCGGCAGAAGACCCTTTACTA
TCGGACATGCAAAAACCTGACGACTGCGTAGTAGAAATTCGAAGTCCGTG
GGCAGATTCACCACAAAGTCCTCCCCGTTCTTATTTAAGTGAGCTTGGTT
CGGGAGCACCGAGAAAATCAGAGCGTGGTTTTAATGATGAAACTAAATTT
TAAGATGGTGAGAGTCTGCTTCGGGGTTAGACATATATAGGCACTTAGAA
TCTGGAAGATAATTTTGTACTGGTTTCTATCTATGGTCAATTGTTGGCAC
CATGTTACTAAGTTTTGATATTGTGAGGTAATCCTTTAGCAAAGGAGGCT
TTTTGGTATCGTCTTTGTTGCTGTTGCACTTGTAGTATTGTGGGAATTTC
TTtagttatttaaaaacaaaagtaatATGATAGATAACatttaaattata
tttttatatatgaGCTAGCCCTATCCAGTAATAAACTAACGCCCGTCAAT
AATGTGACATTTTGTACAATTACTTCAAAAAGGCCCTTCATAATTTTCTC
AAGCGcagaaatatttttgacaatattGTCTTGCATTTTGTGACTCAATT
GTGATAGAAAAAAACTGTCCTGTGGGCGAAAGACTGTGTATGGTATGAAA
GGTCCTCGCTGGCCTTTAGTAACAAACTAACTTTATTCCTAATCTAGGTT
TGATTGGTTAGGTACATTGCATTTTAATTAAATTATATATAATCGAgcat
tttgttaattttaatcattaaaaaattaaaaacacatttttatattgttt
taaatcttcttttttttcaagtatttatttattgttttataactatttta
aaattttcttttcttatctAAAACTTGAGCATTTGTTGATCCGCCGCGAA
ATATCACGTTTCGCGATTGTAAAAATCTTGAATAAGGTCCAtttttgagt
gcaacgactgcctcgttttgataCCAATACTAAAGTAAGTAAATC Run BLAST on NCBI protein sequence of TCONS_00009439-protein >TCONS_00009439-protein ID=TCONS_00009439-protein|Name=TCONS_00009439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
FRAQEKVSTSECGVLDMNALSDRTIDEESFCSDAFNPRSISSLIPKARKQ
SKKTYSKRKYTLNSLDEEEAFEDRFRKIHKDTVQHPSVHRSSHKHHHHRK
SRRHSKGHRSKGRSKKPDMETLPELTEAEETVLDTNSTLTHAGNAKVTTS
TSGNHLDIPDGGPPSVPDVDTAAAEHSDAESTEGIVFHVQQPNEKNPLLE
EEDPYFPTLPSYSDSGPYLSKYGNQPIVDYREPKQFTERDKEDLQAAKRW
RSFSIESAGAAEDPLLSDMQKPDDCVVEIRSPWADSPQSPPRSYLSELGS
GAPRKSERGFNDETKF Run BLAST on NCBI transcript from alignment at sc0000095:26088..30070+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009439 ID=TCONS_00009439|Name=TCONS_00009439|organism=Clytia hemisphaerica|type=transcript|length=3983bp|location=Sequence derived from alignment at sc0000095:26088..30070+ (Clytia hemisphaerica)
CATTTAGAGCGCAAGAAAAAGTGTCAACATCTGAGTGTGGTGTTCTGGAT
ATGAATGCTTTATCAGGTACCTTTTTAtctttatttgtattttttagtCT
TTCCCTTCGAGCGTCTTCTTAGTTTACCTGAGGGACCTAACAGCCCCTCC
CCCAACATCTCAAAATTAGGTGGTGCTATAAGGTTAAAATGTTAACAATT
AATATCGACAAATGAAGATAATTTGCAAGATTTTAGGTATTTCACAGACC
AGTATAATGTCAATTTAGCTCAATAATGAATTGGGTTGATTGACTTGATG
TTTTTGAATCTTCCTTCTAGATCGTACTATTGACGAGGAGAGTTTTTGTT
CTGACGCCTTCAACCCGAGAAGTATTTCATCCTTAATTCCGAAAGCTCGA
AAACAGGTAATACAATTTCTACCAGTTTTTTCATCGACAGTTAAGAAACA
TTATTCCAACACGAGTAAGGGTTTTTCTCGTAACTAGGATCAAATTCTTG
ATGTTCATGACGTAGTCTTTAATACGGGAACACCCGAAAAACAACGGGCG
TTTGCCACCAGCTTTAAATTCACACAATGAAACTagtggcaaacgcccgg
tgtTTTTCGAGTGTTTCCATATAAAGATTACGCTATCAATACCAAGAATT
GTAATTGGACCCTCTCGTTCCACGGACTTGGAAAAATTaattacaatttt
ctttttgttaatAGCGATTAATAATCAATTGTTCACCAAAACTgtagctt
ttcaaaaaaaaggaaattgaatAATTAGGTCATGAAAAACCAAATAACTT
TatatggacactgtcatttaaatggtacaaaaaatagctgtttttgCACC
ATCTTTACGCCCCTGActagttttgaaaattaaagacTCGTAAATGTCTA
CTAGGCCCTACACTAATACCTGTGGTTAAGTTAAAAGGTCCGTTTTCGGA
CCCATGCTGGTCCCGTAACTGTAAAAGGTATACTTAAAGAGATAACAGCT
TTTGAACTGCGGTCCTAAAAAGGACAATGAATTGTCCTAACTGAAAGGAT
AATGAGTTNTTTATCTGCCCATTTTACTTTTCACATTACAGGTTTTATGT
TTAACCATAGTGTTTTTGTGTTAAAGATCACTTGATAGTTTCAGTTTTGA
CCACTTTCATAATTCAGATACTAAAACTAATGTAAAATTAAGGACAACTT
TATTGTCCTATTTTGGGACCCAAGAACGTAAAAAGTGGGCCTTTTTACTA
TTAGGAGATAAAACAACCATTCAGCTTTAATTTAAACTAGGTTTGGTATA
GACTAAGCTTAAATGGCCCTTTTTAGGACAATANCCTAGATGTTGTAAAG
TATGGGCAATTAATTGTCATCAAAatcaactttaaaacaaaaattcattc
aagATCCTCTCAAATCAGGCTCTAAACATCTCAAATATAAGATGATTAAA
ATGAAAATCGTTGAACGGCCCCTCTGATGGACAATCTGTTGTCCTAAATG
TATTTAAATTAACCACTTTTTGTGCTCTAACGCTAGGGAATTAAccattt
ttatcttttccaaAATAGTGCCAAAACTATTAGCTTATataagctaaaat
tttgcacaaaactGTATGAATGGTTTACGNTTTGTCTGGACaacaaatta
gccatatttgggccatttaaccccctggagtgattttaaccatcttttac
cCTTTCTAATGTTAATATAGAGTTTTTCTGAGATTTTCCCTaatttttga
tgtaatttgGGCAAGTTATTACGAAAACCttattttaagccatttttggc
atggtgcatgatttgtaccatttaaatgacagtgtccatatggggattat
attttcttttcccGGACACATTGTATATTTTTGCCTTTCATCTTGATTAC
ACACAGAGCAAGAAAACGTATTCGAAACGAAAGTATACGTTGAATTCACT
GGACGAAGAAGAAGCTTTTGAAGATCGATTCCGAAAAATGTGAGTTACTT
ACAATGAATTACATCTCTTTtgccaatagacgatatcggctttcgataaa
tgcaatgcattctggtttctagggactctcaaaggaattataatagatca
attataatagattataattcctttgagagtccctagaaaccagaatgcat
tgcatttatcgaaagccgatatcgtctattaagtGATACTGCTCATCATG
GCCATATGCTTGCCATGCTTGACCAGAAAACTGATTAGACTACAATGCAA
CTTATTTTGCTTCGCAAACTGGCCATCAGCGTTCACTTTTCTTCCATCGT
CAAGAATGTTTTTCTTCTAAAGAAATAACACAATGTGCCAAAGTGGAATT
TATGTTCAAATGTCAAAAGAATTTCAAGCCCTTTGATATCCGAGATGTTT
CAATATCGAGTTCCATTTTGAACAAGATCTTGTTTCGGCATCTTATTATT
TTCTTCTCTTCCGTTTTCTTTAGACACAAGGACACGGTACAACACCCTTC
TGTCCATCGATCAAGCCACAAGCACCATCACCACAGGAAATCACGGCGTC
ACAGCAAAGGACACCGCAGTAAAGGACGTAGCAAGAAGCCAGACATGGAA
ACGTTACCAGAACTTACGGAAGCCGAAGAAACTGTACTGGATACAAACTC
AACACTAACGCACGCTGGAAATGCTAAAGTTACAACATCTACAAGCGGCA
ATCACCTTGACATACCGGACGGAGGTCCACCGAGTGTGCCTGACGTCGAT
ACCGCCGCAGCGGAACACAGCGACGCCGAAAGCACCGAAGGAATTGTATT
TCACGTCCAACAACCCAACGAAAAGAACCCTCTTCTAGAGGAAGAGGATC
CGTACTTCCCGACTTTACCGAGCTACAGTGATTCTGGTCCGTATCTCTCT
AAATATGGAAATCAACCCATCGTAGATTACCGGGAACCGAAACAATTTAC
GGAAAGAGATAAAGAAGACTTACAGGCGGCCAAAAGATGGCGGTCTTTTT
CAATCGAAAGCGCAGGCGCGGCAGAAGACCCTTTACTATCGGACATGCAA
AAACCTGACGACTGCGTAGTAGAAATTCGAAGTCCGTGGGCAGATTCACC
ACAAAGTCCTCCCCGTTCTTATTTAAGTGAGCTTGGTTCGGGAGCACCGA
GAAAATCAGAGCGTGGTTTTAATGATGAAACTAAATTTTAAGATGGTGAG
AGTCTGCTTCGGGGTTAGACATATATAGGCACTTAGAATCTGGAAGATAA
TTTTGTACTGGTTTCTATCTATGGTCAATTGTTGGCACCATGTTACTAAG
TTTTGATATTGTGAGGTAATCCTTTAGCAAAGGAGGCTTTTTGGTATCGT
CTTTGTTGCTGTTGCACTTGTAGTATTGTGGGAATTTCTTtagttattta
aaaacaaaagtaatATGATAGATAACatttaaattatatttttatatatg
aGCTAGCCCTATCCAGTAATAAACTAACGCCCGTCAATAATGTGACATTT
TGTACAATTACTTCAAAAAGGCCCTTCATAATTTTCTCAAGCGcagaaat
atttttgacaatattGTCTTGCATTTTGTGACTCAATTGTGATAGAAAAA
AACTGTCCTGTGGGCGAAAGACTGTGTATGGTATGAAAGGTCCTCGCTGG
CCTTTAGTAACAAACTAACTTTATTCCTAATCTAGGTTTGATTGGTTAGG
TACATTGCATTTTAATTAAATTATATATAATCGAgcattttgttaatttt
aatcattaaaaaattaaaaacacatttttatattgttttaaatcttcttt
tttttcaagtatttatttattgttttataactattttaaaattttctttt
cttatctAAAACTTGAGCATTTGTTGATCCGCCGCGAAATATCACGTTTC
GCGATTGTAAAAATCTTGAATAAGGTCCAtttttgagtgcaacgactgcc
tcgttttgataCCAATACTAAAGTAAGTAAATC Coding sequence (CDS) from alignment at sc0000095:26088..30070+ >TCONS_00009439 ID=TCONS_00009439|Name=TCONS_00009439|organism=Clytia hemisphaerica|type=CDS|length=3804bp|location=Sequence derived from alignment at sc0000095:26088..30070+ (Clytia hemisphaerica)
TTTAGAGCGCAAGAAAAAGTGTCAACATCTGAGTGTGGTGTTCTGGATAT
GAATGCTTTATCAGATCGTACTATTGACGAGGAGAGTTTTTGTTCTGACG
CCTTCAACCCGAGAAGTATTTCATCCTTAATTCCGAAAGCTCGAAAACAG
AGCAAGAAAACGTATTCGAAACGAAAGTATACGTTGAATTCACTGGACGA
AGAAGAAGCTTTTGAAGATCGATTCCGAAAAATACACAAGGACACGGTAC
AACACCCTTCTGTCCATCGATCAAGCCACAAGCACCATCACCACAGGAAA
TCACGGCGTCACAGCAAAGGACACCGCAGTAAAGGACGTAGCAAGAAGCC
AGACATGGAAACGTTACCAGAACTTACGGAAGCCGAAGAAACTGTACTGG
ATACAAACTCAACACTAACGCACGCTGGAAATGCTAAAGTTACAACATCT
ACAAGCGGCAATCACCTTGACATACCGGACGGAGGTCCACCGAGTGTGCC
TGACGTCGATACCGCCGCAGCGGAACACAGCGACGCCGAAAGCACCGAAG
GAATTGTATTTCACGTCCAACAACCCAACGAAAAGAACCCTCTTCTAGAG
GAAGAGGATCCGTACTTCCCGACTTTACCGAGCTACAGTGATTCTGGTCC
GTATCTCTCTAAATATGGAAATCAACCCATCGTAGATTACCGGGAACCGA
AACAATTTACGGAAAGAGATAAAGAAGACTTACAGGCGGCCAAAAGATGG
CGGTCTTTTTCAATCGAAAGCGCAGGCGCGGCAGAAGACCCTTTACTATC
GGACATGCAAAAACCTGACGACTGCGTAGTAGAAATTCGAAGTCCGTGGG
CAGATTCACCACAAAGTCCTCCCCGTTCTTATTTAAGTGAGCTTGGTTCG
GGAGCACCGAGAAAATCAGAGCGTGGTTTTAATGATGAAACTAAATTTTA
ATTTAGAGCGCAAGAAAAAGTGTCAACATCTGAGTGTGGTGTTCTGGATA
TGAATGCTTTATCAGATCGTACTATTGACGAGGAGAGTTTTTGTTCTGAC
GCCTTCAACCCGAGAAGTATTTCATCCTTAATTCCGAAAGCTCGAAAACA
GAGCAAGAAAACGTATTCGAAACGAAAGTATACGTTGAATTCACTGGACG
AAGAAGAAGCTTTTGAAGATCGATTCCGAAAAATACACAAGGACACGGTA
CAACACCCTTCTGTCCATCGATCAAGCCACAAGCACCATCACCACAGGAA
ATCACGGCGTCACAGCAAAGGACACCGCAGTAAAGGACGTAGCAAGAAGC
CAGACATGGAAACGTTACCAGAACTTACGGAAGCCGAAGAAACTGTACTG
GATACAAACTCAACACTAACGCACGCTGGAAATGCTAAAGTTACAACATC
TACAAGCGGCAATCACCTTGACATACCGGACGGAGGTCCACCGAGTGTGC
CTGACGTCGATACCGCCGCAGCGGAACACAGCGACGCCGAAAGCACCGAA
GGAATTGTATTTCACGTCCAACAACCCAACGAAAAGAACCCTCTTCTAGA
GGAAGAGGATCCGTACTTCCCGACTTTACCGAGCTACAGTGATTCTGGTC
CGTATCTCTCTAAATATGGAAATCAACCCATCGTAGATTACCGGGAACCG
AAACAATTTACGGAAAGAGATAAAGAAGACTTACAGGCGGCCAAAAGATG
GCGGTCTTTTTCAATCGAAAGCGCAGGCGCGGCAGAAGACCCTTTACTAT
CGGACATGCAAAAACCTGACGACTGCGTAGTAGAAATTCGAAGTCCGTGG
GCAGATTCACCACAAAGTCCTCCCCGTTCTTATTTAAGTGAGCTTGGTTC
GGGAGCACCGAGAAAATCAGAGCGTGGTTTTAATGATGAAACTAAATTTT
AATTTAGAGCGCAAGAAAAAGTGTCAACATCTGAGTGTGGTGTTCTGGAT
ATGAATGCTTTATCAGATCGTACTATTGACGAGGAGAGTTTTTGTTCTGA
CGCCTTCAACCCGAGAAGTATTTCATCCTTAATTCCGAAAGCTCGAAAAC
AGAGCAAGAAAACGTATTCGAAACGAAAGTATACGTTGAATTCACTGGAC
GAAGAAGAAGCTTTTGAAGATCGATTCCGAAAAATACACAAGGACACGGT
ACAACACCCTTCTGTCCATCGATCAAGCCACAAGCACCATCACCACAGGA
AATCACGGCGTCACAGCAAAGGACACCGCAGTAAAGGACGTAGCAAGAAG
CCAGACATGGAAACGTTACCAGAACTTACGGAAGCCGAAGAAACTGTACT
GGATACAAACTCAACACTAACGCACGCTGGAAATGCTAAAGTTACAACAT
CTACAAGCGGCAATCACCTTGACATACCGGACGGAGGTCCACCGAGTGTG
CCTGACGTCGATACCGCCGCAGCGGAACACAGCGACGCCGAAAGCACCGA
AGGAATTGTATTTCACGTCCAACAACCCAACGAAAAGAACCCTCTTCTAG
AGGAAGAGGATCCGTACTTCCCGACTTTACCGAGCTACAGTGATTCTGGT
CCGTATCTCTCTAAATATGGAAATCAACCCATCGTAGATTACCGGGAACC
GAAACAATTTACGGAAAGAGATAAAGAAGACTTACAGGCGGCCAAAAGAT
GGCGGTCTTTTTCAATCGAAAGCGCAGGCGCGGCAGAAGACCCTTTACTA
TCGGACATGCAAAAACCTGACGACTGCGTAGTAGAAATTCGAAGTCCGTG
GGCAGATTCACCACAAAGTCCTCCCCGTTCTTATTTAAGTGAGCTTGGTT
CGGGAGCACCGAGAAAATCAGAGCGTGGTTTTAATGATGAAACTAAATTT
TAATTTAGAGCGCAAGAAAAAGTGTCAACATCTGAGTGTGGTGTTCTGGA
TATGAATGCTTTATCAGATCGTACTATTGACGAGGAGAGTTTTTGTTCTG
ACGCCTTCAACCCGAGAAGTATTTCATCCTTAATTCCGAAAGCTCGAAAA
CAGAGCAAGAAAACGTATTCGAAACGAAAGTATACGTTGAATTCACTGGA
CGAAGAAGAAGCTTTTGAAGATCGATTCCGAAAAATACACAAGGACACGG
TACAACACCCTTCTGTCCATCGATCAAGCCACAAGCACCATCACCACAGG
AAATCACGGCGTCACAGCAAAGGACACCGCAGTAAAGGACGTAGCAAGAA
GCCAGACATGGAAACGTTACCAGAACTTACGGAAGCCGAAGAAACTGTAC
TGGATACAAACTCAACACTAACGCACGCTGGAAATGCTAAAGTTACAACA
TCTACAAGCGGCAATCACCTTGACATACCGGACGGAGGTCCACCGAGTGT
GCCTGACGTCGATACCGCCGCAGCGGAACACAGCGACGCCGAAAGCACCG
AAGGAATTGTATTTCACGTCCAACAACCCAACGAAAAGAACCCTCTTCTA
GAGGAAGAGGATCCGTACTTCCCGACTTTACCGAGCTACAGTGATTCTGG
TCCGTATCTCTCTAAATATGGAAATCAACCCATCGTAGATTACCGGGAAC
CGAAACAATTTACGGAAAGAGATAAAGAAGACTTACAGGCGGCCAAAAGA
TGGCGGTCTTTTTCAATCGAAAGCGCAGGCGCGGCAGAAGACCCTTTACT
ATCGGACATGCAAAAACCTGACGACTGCGTAGTAGAAATTCGAAGTCCGT
GGGCAGATTCACCACAAAGTCCTCCCCGTTCTTATTTAAGTGAGCTTGGT
TCGGGAGCACCGAGAAAATCAGAGCGTGGTTTTAATGATGAAACTAAATT
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009439-exon-sc0000095-1491911889:26088..26153 | TCONS_00009439-exon-sc0000095-1491911889:26088..26153 | Clytia hemisphaerica | exon |
| TCONS_00009439-exon-sc0000095-1510915933:26088..26153 | TCONS_00009439-exon-sc0000095-1510915933:26088..26153 | Clytia hemisphaerica | exon |
| TCONS_00009439-exon-sc0000095-1575043694:26088..26153 | TCONS_00009439-exon-sc0000095-1575043694:26088..26153 | Clytia hemisphaerica | exon |
| TCONS_00009439-exon-sc0000095-1491911889:26408..26493 | TCONS_00009439-exon-sc0000095-1491911889:26408..26493 | Clytia hemisphaerica | exon |
| TCONS_00009439-exon-sc0000095-1510915933:26408..26493 | TCONS_00009439-exon-sc0000095-1510915933:26408..26493 | Clytia hemisphaerica | exon |
| TCONS_00009439-exon-sc0000095-1575043694:26408..26493 | TCONS_00009439-exon-sc0000095-1575043694:26408..26493 | Clytia hemisphaerica | exon |
| TCONS_00009439-exon-sc0000095-1491911889:27994..28076 | TCONS_00009439-exon-sc0000095-1491911889:27994..28076 | Clytia hemisphaerica | exon |
| TCONS_00009439-exon-sc0000095-1510915933:27994..28076 | TCONS_00009439-exon-sc0000095-1510915933:27994..28076 | Clytia hemisphaerica | exon |
| TCONS_00009439-exon-sc0000095-1575043694:27994..28076 | TCONS_00009439-exon-sc0000095-1575043694:27994..28076 | Clytia hemisphaerica | exon |
| TCONS_00009439-exon-sc0000095-1491911889:28561..30070 | TCONS_00009439-exon-sc0000095-1491911889:28561..30070 | Clytia hemisphaerica | exon |
| TCONS_00009439-exon-sc0000095-1510915933:28561..30070 | TCONS_00009439-exon-sc0000095-1510915933:28561..30070 | Clytia hemisphaerica | exon |
| TCONS_00009439-exon-sc0000095-1575043694:28561..30070 | TCONS_00009439-exon-sc0000095-1575043694:28561..30070 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095 | supercontig | sc0000095:26088..30070 + |
Blast
The following BLAST results are available for this feature:
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