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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009469 ID=TCONS_00009469|Name=TCONS_00009469|organism=Clytia hemisphaerica|type=transcript|length=1053bp
cccgtactaaaaaagggccaatcccgtcacaccataaaagtacaaccccc
cgaCTATATGCTTCAATTTATAGCTAATATTTATTACTTTAGAATATTTG
GACTATGACGTTGCATTGGACGTTTTCAAAACATACGAAATCTTTCACCT
GAAACCACTGTTCGTCGGCAAAATGAATGAAGCTTTGGATTATAATCTGA
AATTTGATTCAACACTTCCAAAGATCTTGGGTTTCCCAGAGCTGCCAAAA
GgAAGTAACATTGTGGAAGGAGTAGTTGCAAAACCGATGAAGAATTTGAA
ATGCACTGATCAATATGATGAAGAAACAAGAGCCATTGTCAAATTAAAGA
ACCCTGGATTCACCGAGACAAAACCAATGCCTAAAGCAAGAGATGCCAAA
AAAGGTGGCAAACCTCCAAAGCTAATCAGCAAGATCATGGCATATGCAAC
AGTGGTACGTCTCAATAATGCAATTTCAAAACATGGTGCACCTACCGAAG
ATGAAGTCATCAAACGTATCGTGAAGGAGTTTGTGGATGACATCTTTGAG
GATATCGAAACTGAAGATGAAGATCTTTACCGAGAATGGAAAAGAAAAGC
TGAAAAAGCTAAAATCAAGACAATGATAGCGTCAAAAGCAAATGGACTTA
TCAACAGAAGATTAACTTTACAAGGTGATATAGAGGTACCCGGTGTTATA
ACGGATAGTATCATATCAGAGTCGACAACGACTGAGAGATAGCTGAGACG
CTCTGGTTcttcaactctcaaaatttcattttatatgaTTTCGTCACTTT
AGAATTGTAACTTATAATTTTTATATCtgtttgtaaattttgtaaacTTT
AATATCTTCCCTAATAAATATGAATactttatatatatatttatatattt
tatactcTATACTAAAACTTTgtcttaaagtctattcacgataagtgtgc
actcttttttcttttacctataaactttgaaggaattcttcaatctttat
aaatttggtatcattggaaagatattagtgagtggaacaatttgaaataa
aaa Run BLAST on NCBI transcript from alignment at sc0000095:372566..376993+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009469 ID=TCONS_00009469|Name=TCONS_00009469|organism=Clytia hemisphaerica|type=transcript|length=4428bp|location=Sequence derived from alignment at sc0000095:372566..376993+ (Clytia hemisphaerica)
cccgtactaaaaaagggccaatcccgtcacaccataaaagtacaaccccc
cgaCTATATGCTTCAATTTATAGCTAATATTTATTACTTTAGAATATTTG
GACTATGACGTTGCATTGGACGTTTTCAAAACATACGAAATCTTTCACCT
GAAACCACTGTTCGTCGGCAAAATGAATGAAGCTTTGGATTATAATCTGA
AATTTGATTCAACACTTCCAAAGATCTTGGGTTTCCCAGAGCTGCCAAAA
GGTAAGACATTATTTCATGACCGAAAAGGAGTTACAAAGAAACCTAAAAT
CAAGCATGTTTATTACTTATTAAGACAATATCAAGTAAATTGTACCATAT
TTATCATTGTGACAACTGTTGAAGAataaaatgtgtttttaaaGATACTT
ACTCGACCCTTAAACTGAAAATACCTCCCCAGATGGCAtgtaacgttgtt
tcaacgttcaactAACATCATATGGACTTCATGAACGTGTTAGATAGGGC
GGCAAAACATCGTTCCTTGTCAGCTTGGTCAGGCATCGAGGATTGAATCC
GAATCcgatcttcatcttttaggAAGTAACATTGTGGAAGGAGTAGTTGC
AAAACCGATGAAGAATTTGAAATGCACTGATCAATATGATGAAGAAACAA
GAGCCATTGTCAAATTAAAGAACCCTGGATTCACCGAGACAAAACCAATG
CCTAAAGCAAGAGGTATAATGAAATTATTTCATTCTTTTATGAAGATAAA
TAgatttattatatacctgtaggcaaaaacagccattgaataattcctga
tataccatggcaATTATACAACTAtgaatctcaataaccaacttttaccc
attgaatatctgcttaatattaCCCAAAATATAGTACAACTAAGAACCAT
TGTAAGATTTCAAAAAGTTCCCCAATATGTGATTATTATAGCTCTGATTC
AATTTGGAAAAATAACGTTTGATgtcaaaaaggtaaaaattgaCATCGCT
AAAATTCATCCAAATGAATAAAAACAGAGATTTACAAGTTAGGCTCACAG
TGGGCCTCTAACCGATCTTATTTAAACTCTTCCTGTGTCGTATTTCAAGC
CATGGGTTTTCCATGCATCgttaagtttttctttgaatgatTTGCTGGAA
TCTGCTGAAACAACATCACTTGGTAGCTTGTTCCAGATTGGTACACACCT
ATAGTAAAAGAATTTNattcctgatataccatggcaATTATACAACTAtg
aatctcaataaccaacttttacccattgaatatctgcttaatattaCCCA
AAATATAGTACAACTAAGAACCATTGTAAGATTTCAAAAAGTTCCCAAAT
ATGTGATTATTATAGCTCTGATTCAATTTGGAAAAATAACGTTTGATgtc
aaaaaggtaaaaattgaCATCGCTAAAATTCATCCAAATGAATAAAAACA
GAGATTTACAAGTTAGGCTCACAGTGGGCCTCTAACCAATCTTATTTAAA
CGCTTCCTGTGTCGTATTTCAATCCATGGGTTTTCCATGCATCgttaagt
ttttctttgaatgatTTGCTGGAATCTGCTGAAACAACATCACTTGGTAG
CTTGTTCCAGATTGGTACACACCTATAGTAAAAGAATTTTGCTTGTGGTC
CGTTGAAACCGTCATTCGCGAAGTTTGGTGAGAGTTCGTGAGCGTATCTT
CGGTTTGGGCGTGTTCGACTAGTCAGTTTGTCCGGTAATGTCGCTTTATC
GTAAAAGTGGAGGTGTTTGTAGACCTGGACCATATCACAGAACTGTCTTC
GAAATTCCAGTGTTGGTAGATCAAGCATTTTAAGTCCTTCGCTATACGAA
AAGTTGCGACACGTTTGGACTAGTCTTGTTGCACATCTTTGCACTCCCTC
AAGCAAATTGACGTGCTTGCGTAGTCTTGGTGACCAAACTGACTGTGCAT
ACTCGAGATGAGGTCGCACAAAGGTCGAGTATAGTGTACGGAGGATCTCT
GGAGTTAAGCTGGCGAAACCTCGCTTGATGACCCCGAGCATAGATATAGC
CTTGTTGACTTGCTTGGCTATTCAAATGATAATTCAGCATCAATCAGTTA
TACCAAGGTCTTTTTCTTCGAATACATGCTCAAGCTGATTATCCGCAAGA
CGAAAGGGGTAAGCATGTTTGATGTTTGTGAAAGCGTAAGGACGTGGCAT
TTGTCGGGGTGGAATTTCAAGAGCCAATCTTCAGACCATTTTTCGAGTTT
TTCTATATCACTTTGGATGATGCGGAGAGAATCAGTGATAGAATTGAAAA
TCTTCGTGTCATCTGCGAAAAGTAGTAGAGATGAAATAACTTTGTCAGGC
AGATCATTTATGTACAAGACAAAAAgcaatataaaattttttttttctct
agatGCCAAAAAAGGTGGCAAACCTCCTAAGCTAATCAGCAAGATCATGG
CATATGCAACAGAGGCACGTCTCAATAATGCAATTTCAAAACATGGTGCG
CCTACCGAAGATGAAGTCATCAAACGTATCGTGAAGGAGTTTGTGGATGA
CATCTTTGAGGATATCGAAACTGAAGATGAAGGTCTTCACCAAGAGTGGA
GCAAAGAGGATGAATCTGACaaagataaaatcaaaacaacattgacATCA
AAAGCAAATGGTCTTATCAAGAAGATTAACAGTGGAAGGTAGCACCCCTT
TACAAGGTGATAtagaaattcatttttaattCGTGGAAATTCATATAACT
AAGAGCTACCCGGTGTTATAGCGGATAGTATCGTATCAGAGTCCACAACG
TCTGAGAGATAACTGAGACGCTCTGGTTCTTCAatcctcaaaattttatt
ttatatgaCTTCGTCACTTTAGAATTTATTACTTCTTAACTTATTACTTT
TATATCTGattgtaaattttgtaaactttattatCTTAcctaataaataa
ataaattctttgaagaaaaacttTGTCTTAATACAATAAATCAAAAACAC
TGAATTTCTAGGAAACTTGTCGAAATTATAAGCCCTTTTTAATACGTCGT
CAGCCGGGGAAATTTCACCCACCCTTTTATAAGCTACCTATGTTATACAT
AAAAGTATTTCTACTATCTAACTAATGTTACTGCCCATAAAAATCTTCGA
TATTATCCCTACACATTCTTATATAGAACCAGGTGGTAATACTGAATAAT
TTCTCCTCGCTCAAATACATAGATTCGGCAGTTTTAACTGCTATCACTAC
CTTGTTTTAGCAGtatgccaaaaaataaaaaaacaacagaaaaatcCCGA
AATTGCTCCAGGAATGTTTGCCGGAGATTGAGAAAGTTTAACCATCCTAC
AACAGCTGATTGAAAATTTATACTTGGCTTCATGGCTATTCAGTTCCCAT
TcagtgtttttttatataagcatacTGCAAATATTTGAAAACAGGCTCGA
AGATGTTTAGGTCGCGGGCTtgacaaagctgaaaaatgctgatatcccaa
gcaaaatttcagggaaattctgaaaatccgtaaaatcccATACATTTGTC
ATACAATCCGGGTTAAAATATATTGAGGATTTTGTTTATTTCCTCATATT
TTTAGAAAACTAAAGTTCGGGCGAGTAACTCGCGAGAGAAAGTTCCCCAA
TATGTGATTATTATAATTCTGattcaatttggaaaaaaaacatttgattt
caaaaaggtaaaaattcGATATCGCTAAAATTCATccaaatgaattttga
aatacttttttcTCTAGATGCCAAAAAAGGTGGCAAACCTCCAAAGCTAA
TCAGCAAGATCATGGCATATGCAACAGTGGTACGTCTCAATAATGCAATT
TCAAAACATGGTGCACCTACCGAAGATGAAGTCATCAAACGTATCGTGAA
GGAGTTTGTGGATGACATCTTTGAGGATATCGAAACTGAAGATGAAGATC
TTTACCGAGAATGGAAAAGAAAAGCTGAAAAAGCTAAAATCAAGACAATG
ATAGCGTCAAAAGCAAATGGACTTATCAACAGAAGATTAACTTTACAAGG
TGATATAGAGGTACCCGGTGTTATAACGGATAGTATCATATCAGAGTCGA
CAACGACTGAGAGATAGCTGAGACGCTCTGGTTcttcaactctcaaaatt
tcattttatatgaTTTCGTCACTTTAGAATTGTAACTTATAATTTTTATA
TCtgtttgtaaattttgtaaacTTTAATATCTTCCCTAATAAATATGAAT
actttatatatatatttatatattttatactcTATACTAAAACTTTgtct
taaagtctattcacgataagtgtgcactcttttttcttttacctataaac
tttgaaggaattcttcaatctttataaatttggtatcattggaaagatat
tagtgagtggaacaatttgaaataaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009469-exon-sc0000095-1491911889:372566..372816 | TCONS_00009469-exon-sc0000095-1491911889:372566..372816 | Clytia hemisphaerica | exon |
| TCONS_00009469-exon-sc0000095-1510915933:372566..372816 | TCONS_00009469-exon-sc0000095-1510915933:372566..372816 | Clytia hemisphaerica | exon |
| TCONS_00009469-exon-sc0000095-1575043694:372566..372816 | TCONS_00009469-exon-sc0000095-1575043694:372566..372816 | Clytia hemisphaerica | exon |
| TCONS_00009469-exon-sc0000095-1491911889:373138..373278 | TCONS_00009469-exon-sc0000095-1491911889:373138..373278 | Clytia hemisphaerica | exon |
| TCONS_00009469-exon-sc0000095-1510915933:373138..373278 | TCONS_00009469-exon-sc0000095-1510915933:373138..373278 | Clytia hemisphaerica | exon |
| TCONS_00009469-exon-sc0000095-1575043694:373138..373278 | TCONS_00009469-exon-sc0000095-1575043694:373138..373278 | Clytia hemisphaerica | exon |
| TCONS_00009469-exon-sc0000095-1491911889:376333..376993 | TCONS_00009469-exon-sc0000095-1491911889:376333..376993 | Clytia hemisphaerica | exon |
| TCONS_00009469-exon-sc0000095-1510915933:376333..376993 | TCONS_00009469-exon-sc0000095-1510915933:376333..376993 | Clytia hemisphaerica | exon |
| TCONS_00009469-exon-sc0000095-1575043694:376333..376993 | TCONS_00009469-exon-sc0000095-1575043694:376333..376993 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095 | supercontig | sc0000095:372566..376993 + |
Blast
The following BLAST results are available for this feature:
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