TCONS_00009473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009473
Unique NameTCONS_00009473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1976

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009473 ID=TCONS_00009473|Name=TCONS_00009473|organism=Clytia hemisphaerica|type=transcript|length=1976bp
GTGTGTGTAGTCAGTAGTGTAGTAGATAACAGGCAGGTAATATACAGTAT
AAAGCTAAAGcagagttaaaaaatggaaaacaaaaaactattATCACCAA
CACGGCAGAGTTTGTTTCGAGCATGCAAGTCTCCTGCTAAACAAGAAGAT
ATCAGAATTCCAGAGCCAGAGAAGAAGATCAAACTTGGAGCTGATTTGCT
CAATGCTTTTCCAGAGATCgctgaaaattttgatattatcAAGAAGGTTG
GAGAGGGTACATTTAGCAAAGTGTTTCTTGCCAAAATGAAATGTGATTCA
TCCAAAAAGGTTGCTTTTAAACATCTAGTTCCAACAAGCTCGCCTGGTCG
CATAGAAAATGAATTAAAATGCTTACAAGAGCTAGGtaATAAGAATAATG
TTCTTGGCATCAAGACAACACTGCGAAGGAACGATCACATTGTATTCGTC
CTGCCTTACTTTCCATACAGAAAATTTAATGATGTGATGGACCGTATGAG
TGCAAATGATATTCAGAATTACATGAGAAACTTATTGATAGCTTTGAAGC
ATGTTCactcttataaaattattcacCGGGATATCAAACCAAGTAATTTC
CTTTATTGCCAAGAAACAGACAGCTATGCATTGATCGACTTTGGTCTAGC
CATGCCTGTCCCTGGAACAAAAGGATGTTTCCTTTCAGATTACACTGCAA
CTGTTGTGGGAATGTCAGACAATAAGAAGCCTTCTTCATCAAAAGCTTAT
GCTAAACCATGCAAGCACCCGAGACTTGATACATGTAACATCTGTAGAAA
TAGACCACGTCAAAAAGCACCGAGGGCAGGCACTCCAGGTTTTCGTTCAC
CAGAGGTATTGATGAGGTATCCTAACCAAACGACAGCTGTAGATATGTGG
GCTGCTGGTGTTGTTTTCTTATGTTTGTTATCAAGACGTTATCCATTCTT
CAAAGCTAAAGACGATATGGAAGCCCTCTCTCAAATCATTGTCCTCTTTG
GCAgtaagaaaattaagaaaatggcTGACTCGATTGGAAAAACTTTCGAT
TGTTCACCTCCAGTAGAGAATCCGGACACTTTGAAAGTTATCTGTGAAAA
ATTAGCTCGCAGACAATGCTCTTTACATAGAGACTACAAAGAAGGATCTG
CAAAACGAAAACTTAGTGATCCAAGTGCAGCAGCCACTAATAGTCCAAAC
AAGAAACAAGTAAGCGAGACAATAATTAAAGACTCTAATCAAAGTAATCG
AATCTTAGCCGACATAACATTGGGTAAGAACCGACTGACTCAATCAGAAT
CGACCTCAAAATGTACGAGTTCTATTTCAAAGTCTAAAAAATCTAAACAA
CCAGTTTGTGCTTGTATACCTGAAAGTGCGTATGATTTGTTGGGGAAACT
ACTTGAACTGAACCCTGATGATCGAATCAGTGCATCTGATGGTTTAAAAC
ATCCGTTTATCACACATTATTGAGCGTGGTTAGTTATCATTATAAAGAAT
CATTGCTAATTGGTGCTTGTGCTTTTTACCGATTTTATGtttagaaaagt
ttttgaagaCCTGGATTGACTGGATTCGTTCGTTcggtttttttgttttc
tacatttttttaaCTCCCTCCAAAGAATCACCCATTTGACTGTCATTAAA
ATTTTTATGTatggttctttttattattatggGTTGTTTTTCAACAATAA
AGAGTGAATTGCATTCAAACCGTGCAGTCATATTTTAtggtttaagaaaa
attttgagagcatTGCCGTTGGTAGACTCAAATATTTGAATAACAAATAA
TAGacgtttttgatgttttaaagTGTGCCCGGAAAAAAAGTGGTGCACCC
ATACAAAGGAAAATTTGTATGATTTTTGCAAGACACTACATTAAAAAACA
TTTATTAAAAATAATGCAGttttagttttgtttgtttttagcatactttt
gtatatattttgaaTAAAGATAAAAA
Run BLAST on NCBI

transcript from alignment at sc0000095:406073..423220+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009473 ID=TCONS_00009473|Name=TCONS_00009473|organism=Clytia hemisphaerica|type=transcript|length=17148bp|location=Sequence derived from alignment at sc0000095:406073..423220+ (Clytia hemisphaerica)
GTGTGTGTAGTCAGTAGTGTAGTAGATAACAGGCAGGTAATATACAGTAT
AAAGGTAGGCactttttcttactttctttgaatagaccttttttcaaaga
ggtctaccctgttgaataattatgtagtccagcagaaaaacaatgataaa
accatgcagtacactatcattgtttttatggctggactacataattattc
aacaggacgtcctctttgaaaaaaggtctattataaaCATGGTCCTAAAA
TCATAATTCCATGTTAAAAGGACAGTCTAAACCTAAACTCCTATTGTAAA
CACTGACTGtggtagcgactccagaagtcatgcaactttcgttgacgtca
aaccaaatgtttcatttttccgtgaactttgaacccttggaactttgttt
ctatgtatgctaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNttaacaccatcaaagaattctccctccaaatttgaggtctctag
ctacagtagaaaaagagatatgcaaaatttaagaagcatgactggaaaat
ttctttttttcatttttgacacatttttcgaatttttccaagctattttc
ctaaccttttttttgacattttcagtcaaatttttgacactagaatttga
atatctttacaaccactcatcctctggaggcctatgacccctcattttct
ttctttttcaaagctctacaagataggatagattttgaaaaaaaaattaa
aaNgctgcaatgtcttcttttttcaaaaaaagatatatcttttgttattt
tgataaatatactaaatattttacaaatattttaatataataatatttta
acaccatcaaagaattctccctccaaatttgaggtctctagctacattag
aaaaagagataggcaaaatttaagaagcatgactggaaaatttctttttt
ttcttttttgacacatttttcgaatttttccaagctattNGGTCTAACTT
GTTGCGTTGGGACTAGCTGACAGCTCTGGGAGACCTagatagcgactcca
gaagtcatgcaactttcgttgacgtcaaaccaaatgtttcatttttccgt
gaactttgaacccttggaactttttttctatgtatNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTtctggtttttactaaatg
aaagcccgtgatcttagctttccagcggtatataacactgtggacacggg
ctagacggcaaattggtaaaatgacgaacgttttgcaacattttaaaaat
tatttgccgacgggagaaaaaaaatttgcaactatcgaagaacaaatgtg
tctggaaacggaggaaaatgtatttggaggctgaaactttgtatNgatag
attttgaaaaaaaaattaaaacttgaaaaaatcttctggagttgctaacc
tagacaggagacccctcgtgtgtttttttataatttgatgtacacaagac
gggttcgagctgtgagtccaatattggacttaGTTTATTacggaaattcg
aatttagcgctgtcctcacttactaagataaaaaccaaatttcggaagtt
gcgctttctctaagaaagtgtgaccagtaaaagaataacaaaatttgatt
ggctatgttttcaaccattattaggatctgagaaattcaaactctcagcc
cataccatgctatacatttcgccatcagtttatcaaagaagaaatcatag
cattgATTCCCAGGCTATGGGAGACCcatccaatgaagtataagcccgaa
gggctagaagtcaatctccttggtaggatttgaagccaacaaatcctacc
aaagttgcgcggccttgagcgggtCGCCTGTTTTTtccacaaatgacaga
ttgaaactaaaatttaccgcttaattttgaaaaatatatcactcgaaaac
aaaggaattgctagattcaatccgtcatcaaaaagacggcgaatatttta
aggcttcaatttttcttgcctgagaaaggttagagattgacctctagccc
ttcgggcttgaaactcaatggtcctGACGTGACCGAGTTAAAAAACCTGA
ATTAGCTTTTTGTCAAATAAaataacccgatttttttaATGGTGCACCTT
AATTTTTCGAGCAAAAGGCAGAAAAGGGTTACTCGATTTNACCCATCTAC
TCTCTGTTTGTGTGATTTcgaagtatagcatttagtcaaaacgaataata
ataatatagaaataacagagtagccgggtatttttgtagatgtaGATGCC
AGATCTGGTCGCAGAATTTTATTGattgttgaaatcacgtgatattattg
ttttgattggtaGTGCGCGAGCCTGATTGGCtaaaccttatcaacggctt
ttttggcacgaaattcaaaccaaatgtaaacaaattcaaacttggttaaa
aataccatactctcaataAGTAGCTTCTGATTGGGTTTTTTGCTTATGCC
TTATGTGGTGTGTGAGTTTGAATAGAgaagtatggatctccagactaact
tgggactatctgacaaaacatgaggacgacaattcggccaccatttcacc
gaacgtccaaagtcatttgatttgagttaagaaacggcgtatttaaaaat
acaagatttctctttcgattttacagtaagtgaaaatacagaccagatat
gcaacagtcccatgtttcgaccaatcgtcccaagttagagcagttgacgg
tatatcaGAATTAGACCAAACGGTAACATGAACTCAGGTAACCCGCATAT
CAgtggagggtaacttgcatatTCGCTTGCTTGCAActctagtctaccat
ttttgttttgattttactttgaattttaatgaccagcccggtcattcatt
tgagggctatgcatgttagcctccactgattacccgatctcacagtaCTA
TATTAtaaatcgaacgttcgattgtgatcgaagtaatcaataatgattgA
TAATAATGAAGGTGATCAGTGACCacttatcgattctatcggtgatcgaa
tactcactcAACTTCAAATCATGGCattttttttgaccattttcaattCA
TTCGATCGtttcgattactgttcgattacTTCCAATCACTtttgatcata
ttgaataccttcgattGTGTCAGATATGTTTCCTGTAGCAAAGCAACGGA
ATCTGAAGTACTGGAGGTGATTCATATGGCTTTTTTTGTGGTTTGGTTTT
AGGTCAATGTGTTTAGTTTTTCTTAATAGGGGTGGGGGTAAAATGGGGCT
ATCTTCAAATCATGCTGTGCTAGAGTTTTTTTGATGTGTTTCtacccaaa
taacaataatctgaaattttttttNNNNNNNNNNNNNNNNNNNNNNNNNN
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CTTTTACAtaacaaaattgacaaaaaattactcttttttgagtttttggc
ccaaacaggcccaaatttgcctaatttTTGCTCCAACAAGGTGTTGAAAG
CACCTAAATTATATCTTAAGTACTTCTAAATTATATTCAAACAACTTTGA
ATACTAAATGGCTTCATATGGGATCATAAACAAGTAGAAATATCagtaaa
atgacaaaaattgccATTTTTGGGGTTTTGGGACCAAAATCAGCAGTTTT
TGGTCCGGCAATTCctgaaaaatgcatgaaattgaaattttttttcagat
tattgttatttgggtaGAAACACATCAAAAAAACTCTAGCACAGCATGAT
TTGAAGATAGCCCCTAAAAAATGTTGATTTACCCCTACCCCTATTCTTAA
AGATATATAATAGTCCTGGATAGTATATAAACTGGTTATCAAAGAAATCA
ATGGTTACacgaagtaatcaataacaatcaaagttcTTGAATGGTTATCG
AGTCTttgaagggttgttaagaaagtgatcgaatactcacaatttttttg
aaatttttgtactCGAAATTCGATTGTTAATTGATAAATGGTCATTCAAT
TACTTCtatcattatcgattacttcgataattgaatttatcgattagtac
cATCTGGATTAGAAACTACGCTAGTCTTACCTCGTTTATCTTTctcttta
caacaatacaaagCTGAAAAGTTGACACCACACATGCGATTATACATGTA
CATTgtattgacaagtaatccctgagagaagtttctatcgaaatctgcaa
caaaaacaaaagtggtctcttctactgattgcttcccagcgctcctttgc
agctgtttatcaaatttccaccaatgaggttgccacaTTTCAAACAGCCC
TTTTTTGGCACCCATGGCCTGTCagtctcagtgccttgcacgacaggcag
ctgtaaaatcccacccttcatcatatatttatttcaatctgtgttccgtg
gcttaggttttttctcataatCGATTTATATACTAAAGAAAGCAGGaatt
gatgcgagagttagaatGTCAACAAattgccgtaaaaaatcattgaataa
aaaaaaaacttaaaatcttgaatattttcattttgaagaataggttcaaa
aaagtgaaacagaaaagtttcatttttcattgcattatcGAAATGGaaga
tttagaaaattttctatgtttagttttttcacAAACCCTTGTAACTTGGG
CAAGCACctcgttgctaagatgttggcttgaaatggtaatgaaaccactc
aaaacaaaagtaaaatcggcATGTACTGGAAATTCTGgaatcttgatata
caagtttaagtctatactgaaAGGTGTCCCAATTACATGTTTTTAAACCT
TTTACGTAAGAGTGATATAGTAAAAATGGGGAAATTTGGAAGCCAAAGAT
TAGGAAGCCAAAAATTAGGAAGCCAAAAATTAGTAAGCAAAAAATTAGAA
GAACTttacagaagaaattttacTTATCCAAAATTTTACCAATCCAATTT
TCTTCCCTAAAGCTAAAGcagagttaaaaaatggaaaacaaaaaactatt
ATCACCAACACGGCAGAGTTTGTTTCGAGCATGCAAGTCTCCTGCTAAAC
AAGAAGATATCAGAATTCCAGAGCCAGGTAAAACGTATTTTATGTTATAC
TCAAGGCTGAATTTCACGACTAGTCTTGTCATCCAGATCAGACTCAAtca
aactgaaaataattaattcaTTGACttaaacacatgattttcaaacacat
tgtcttttttattcaaaattgtaGAGAAGAAGATCAAACTTGGAGCTGAT
TTGCTCAATGCTTTTCCAGAGATCgctgaaaattttgatattatcAAGAA
GGTTGGAGAGGgtaattattaaatatttcaagtGAAACAATTGACCATCA
AGGACTTGCAGCTAGCAGGTTCACTGGTCCTCTGATAAAAAATTGGGCTT
TTTTAACTTTCGAATTTTGCTCCAAAAACACTCCAACACTAGTTTTCTCT
GGAGTATAGCCAAATGATCAGTGAATGGCTAACACAGGTCATTTAAAGTA
TAATCTCAAAGTTTATATAAGATTTAATTGTTTAAAAAAGGTATTTATTT
TTAGCACTGCTTAGCAAGACTAAtccaggaaaatattttttgcattatta
gttttcattttcactttctaagctttcaaaaatttcatatatacccgtga
cctgtgacctgtgttttacactaaccgtacAATCCCTATCATAAGTTatt
ttttactgtcagactaaTACTAGATTATCATTCAATTCATACAAAATAAT
AAAGGAAATAATCTTAATAAATCTTATCAACTTAAGCTTTTGATTGATTT
ATTAATTAATAATCATTAACTAATGAAATAATACTTTagattaatttcat
tttctagGTACATTTAGCAAAGTGTTTCTTGCCAAAATGAAATGTGATTC
ATCCAAAAAGGTTGCTTTTAAACATCTAGTTCCAACAAGCTCGCCTGGTC
GCATAGAAAATGAATTAAAATGCTTACAAGAGCTAGGGTAAGTTTTATCA
TTCTATCCTTTTTTCTGTATAACAAAATTGGTAATATTGTGCTATCTCAG
CCTACTATCACAGCCGTCNGTATTTCAAGTGAAACAATTGACCATCAAGG
ACTTGCAGCTAGCAGGTTCACTGGTCCTCTGATAAAAAATTGGGCTTTTT
TAACTTTCAAATTTTACTCCAAAAACACTCCAACACTAGTTTTCTCTGGA
GTATAGCCAAATGATCAGTGAATGGCTAACACAGGTCATTTAAAGTATAA
TCTCAAAGTTTATATAAGATTTAATTGTTTAAAAAAGGTATTTATTTTTA
GCACTGCTTAGCAAGACTAAtccaggaaaatattttttgcattattattt
ttcattttcactttctaAGCTTTCAAAAACTTCATATatacccgtgacct
gtgacctgtgttttacactaaccgtacAATCCCTATCATAAGTTattttt
tactgtcagactaaTACTAGATTATCATTCAATTCATACAAAATAATAAA
GGAAATAATCTTAATAAATCTTATCAATTTATGCTTTTGATTGATTTATT
AATTAATAATCATTAACTAATGAAATAATACTTTCgattaatttcatttt
ctagGTACATTTAGCAAAGTGTTTCTTGCCAAAATGAAATGTGATTCATC
CAAAAAGGTTGCTTTTAAACATCTAGTTCCAACAAGCTCGCCTGGTCGCA
TAGAAAATGAATTAAAATGCTTACAAGAGCTAGGGTAAGTTTTATCATTC
TATCCTTTTTTCTGTATAACAAAATTGGTAATATTGTGCTATCTCAGCCT
ACTATCACAGCCGTcgtagatttataaagccgGGTTAGATGTCATgcttt
aagcttttccaagcaacaaaaattgaaaatcgcaaaaaatattgttactA
TTGTTTTTGAACACCTGCgaggcttctgattggtcaagggttgaaattct
tttgtaatgtcacttgacctaggtaggatttacTACATAGATaaggcaca
cttttcagccaaaacacAATACTCAGCTGTTCTGATAACATAAAGTTTTA
GAAAGTGTAAAACAATTTCTGATTTCAGTTTGAATATTTTTCTCTCTAGA
ATTTTGATTGGCAACTTGAAAATTAACATATTAAtaaattattaattatt
ttCCAGTTGTctcatctttttctttttatagtaATAAGAATAATGTTCTT
GGCATCAAGACAACACTGCGAAGGAACGATCACATTGTATTCGTCCTGCC
TTACTTTCCATACAGAAAATTTAATGTGAGCTATTAAGATTATTTGCATg
ttcctaaaaaaaattaaatctgtGAAATGCATGATAataaagtctgttcc
aaaaattcaacataagaagacaaaataaccccagcgagatcgctcaatgt
ttcaatttcagtctaaaaaggctgattttttCCAATTCTGGGTAGCAAAG
TGCATGAAAGcaggggttattttgtctttttatgttgaatattagtacga
GACACCTTTTAGCAACCATTTTGCCCTTTTCCTGCCCATTCATGGCCTTa
gaatgggcaaaaaatgccatttttactcatttttcccTTTAGTGAGAATC
AAAGACCTCCCTGGGAAATGCTGGATTTTTGATCTAGGAGGTTAAAAATG
GAGCAAAATGTTTTACAATAGATTtttactttcacaaaaaaatactatac
tttgaattttttgacttcacatttgacgatctaccctattGTTATTCACT
TAACAAAAAAGGAAGCAAAAGTATTGCAAAcgataattttcatttttaat
tgaattGCTTATTGCTTATCAGCTCAGTTGATAGAGCATTCACCTTACAC
TCCAAGGGTTGTGAGTTTAATCCCCGGTCATCGCCAATTCAgcgaatgag
tagcttagattgggtaatttGTTCTAAGCAGTAAGTTACTGGgggctgag
agtaggtgtggcgctccacctcagtaTTCGATTTCCCTGGtctagaaaag
gggatagactccgtCATTCCTGGCTCCGCTGACACCCACCAGATGAATAA
ACTCACTTTACTTTCCTTATAATTGCAGGATGTGATGGACCGTATGAGTG
CAAATGATATTCAGAATTACATGAGAAACTTATTGATAGCTTTGAAGCAT
GTTCactcttataaaattattcacCGGGATATCAAACCAAGTAATTTCCT
TTATTGCCAAGAAACAGACAGGTACAATTATCGATATCATTTGAATTCAT
AAAATATTtaaggattaattaatcctttttgAACCTCTATACTTTGCTTT
ATTCTGGAAAATCTGTTTATATAGCTATATTCAGCTTTTGTACCTAATTC
CACCccttgaattttttatttttttctctcaacattttccacccagaacC
CAGGCGGAATGCTTACTATGCCAGGGAATTTTAACTTGTGACGACTCCAT
TCGCCATTTCTGCGATGGAGCCACTGAAACCTAGTTTTGGATTCACAAAG
TTGTTGAAAAGTTTACTTTCAAATATAGTATCTAACTGTTTGTGTTTTTC
AGCTATGCATTGATCGACTTTGGTCTAGCCATGCCTGTCCCTGGAACAAA
AGGATGTTTCCTTTCAGGTGAATAGAAGTTTCTCATTGGTTCATTTACTG
TACAATGCTCACACTTTTCCATCTCAAATGTGGATTTTCTTTActtactt
tcaaattttgaaggattCGAATCATTCACTAATTCTACCTAAAAATTACT
TACATAATTAGTTATTTTCTGGGAAAGCCAAATCCGGGCGAATTCATTAC
AGTTCTACTTTGTCTTTCCTTAAAACATAGTTAATATAAGAAGTagaaga
tttttcaatattATTAATGGTTTTCTTTCAGATTACACTGCAACTGTTGT
GGGAATGTCAGACAATAAGAAGCCTTCTTCATCAAAAGCTTATGCTAAAC
CATGCAAGCACCCGAGACTTGATACATGTAACATCTGTAGAAATAGGTGA
CTATACTTTATATTGTAcacaaatttcatgtttaaCCTTTGGAAACTACT
TGTTACACTCATTGCAATATATCGAGTTAATTTTCTTCCCAGTTTTTGTA
GCGTCATTTCTCTACTTTGCATTATGTAACATAAACTTTCTTACGGAAAA
AcggtggtaaaaaagtgcttgaaaaataCCTTGCAATGTGTCCGCAGGGT
GGTCTGCAAATTTGTTAAACTGAATCATAATAAAAACAACGACAAAGAAA
AGCTTTCAGTCGGGGTACCAAAATaccttcaaatttcaaaaaaagtttgt
tttcctTGATGTTTTATAGACCACGTCAAAAAGCACCGAGGGCAGGCACT
CCAGGTTTTCGTTCACCAGAGGTATTGATGAGGTATCCTAACCAAACGAC
AGGTATTTGAATTATCTTATCCTAAACCCTTTTGGAAAGAGCTGAGTAGA
AGCTGTAGCAGGGTTGTTTAACATGGTTTTAAGTGAATAAGTAAGTtttc
gaccgcagtcgagggtcacccaaaggctcccttttctctagctgtctacc
tTTCTTTGGATATCCCTTGATCAGTCACTTTAGCTGATAACCATCAATCA
GAAAAGCATCAAGtatcattttgggaatcttaAGTATGACCCAACCCACA
ACTTTGTGCACGGCAgttggatgctctaccttcatgctacggctTTATGG
TAGTTAAATTTCTATACAGGCATTTTAAGATCGACTGTAAATTTTGTGTA
AATTATTATCGAACTGGCAGTAGAACTTAAACTTTGATCTGAAATTgacc
tttgaaattttttacccCATCTTTGTTTCTACTATCTTGCCTGTAACTTT
AGACATTTGcccataaatttttttgccaggCCTTAGCAGCGAACTTCTAT
ACTAAAATGACTTCAAACAcattaaacttttgaaaagaattattttaatG
ATGTCCTAGAAAAGATTTCATGGATACTAAGGTTTGACCCTTACTNGTTC
AGATTACACTGCAACTGTTGTGGGAATGTCAGACAATAAGAAGCCTTCTT
CATCAAAAGCTTATGCTAAGCCATGCAAGCACCCGAGACTTGATACATGT
AACATCTGTAGAAATAGGTGACTATACTTTATACTGTAcacaaatttcat
gttttaccTTTGAAAACTACTTGTTACACTCATTGCAATATATCGAGTTA
ATTTTCTTCCCAGTTTTTGTAGCGTCATTTCTCTACTTTGCATTATGTAA
CATAAACTTACTTACGGAATAAcggtggtaaaaaagtgcttgaaaaataC
CTTGCAATGTGTCCGCAGGGTGGTCTGCAAATTTGTTAAACTGAATCATA
ATAAAAACAACGACAAAGAAAAGCTTTCAGTCGGGGTACCAAAATacctt
caaatttcaaaaaatgtttgttttccTTGATGTTTTATAGACCACGTCAA
AAAGCACCGAGGGCAGGCACTCCAGGTTTTCGTTCACCAGAGGTATTGAT
GAGGTATCCTAACCAAACGACAGGTATTTGAATTATCTTATCCTAAACCC
TTTTGGAAAGAGCTGAGTAGAAGCTGTAGCAGGGTTGTTTAACATGGTTT
TAAGTGAATAAGTAAGTtttcgaccgcagtcgagggtcacccaaaggctc
ccttttctctagctgtctacctTTCTTTGGATATCCCTTGATCAGTCACT
TTAGCTGATAACCATCAATCAGAAAAGCATCAAGtatcattttgggaatc
ttaAGTATGACCCAACCCACAACTTTGTGCACGGCAgttggatgctctac
cttcatgctacggctTTATGGTAGTTAAATTTCTATACAGGCATTTAAAG
ATCGACTGTAAATTTTGTGTAAATTATTATCGAACTGGCAGTAGAACTTA
AACTTTGATCTGAAATTgacctttgaaattttttacccCATCTTTGTTTC
TACTATCTTGCCTGTAACTTTAGACATTTGcccataaatttttttgccag
gCCTTAGCAGCGAACTTCTATACTAAAATGACTTCAAACAcattaaactt
ttgaaaagaattattttaatGATGTCCTAGAAAAGATTTCATGGATACTA
AGGTTTGACCCTTACTCTCGTggaatttttagtttttgatatGTTTCGTC
ACTCTGTTTGTAGTGTTTTATGTTATCATCTTTTATTATTTCAGCTGTAG
ATATGTGGGCTGCTGGTGTTGTTTTCTTATGTTTGTTATCAAGACGTTAT
CCATTCTTCAAAGCTAAAGACGATATGGAAGCCCTCTCTCAAATCATTGT
CCTCTTTGGCAgtaagaaaattaagaaaatggcTGACTCGATTGGTAANA
GTTTGTTTTCCTTGATATTTTATAGACCACGTCAAAAAGCACCGAGGGCA
GGCACTCCAGGTTTTCGTTCACCAGAGGTATTGATGAGGTATCCTAACCA
AACGACAGGTATTTGATGAATTATATTATCCTAAACCCTTTTGGAAAGAG
CTGAGTAGAAGCTGTAGCAGGGTTGTTTAACATGGTTTTAAGTGAATAAG
TAAGTTTTCGACCGCAGTCAAGGGTCACCcaaaggctcccttttctctag
ctgtctacctTTCTTTGGATATCCCTTGATCAGTCACTTTAGCTGATAAC
CATCAATCAGAAAAGCATCAAGtatcattttgggaatcttaAGTATGACC
CAACCCACAACTTTGTGCACGGCAgttggatgctctaccttcatgctacg
gctTTATGGTAGTTAAATTTCTATACAGGCATTTTAAGATCGACTGTAAA
TTTTGTGTAAATTATTATCGAACTGGCAGTAGAACTCAAACTTTGATCTG
AAATTgacctttgaaattttttacccCATCTTTGTTTCTACTATCTTGCC
TGTAACTTTAGACATTTgcccataattttttttgccaggCCTTAGCAGCG
AACTTCTATACTAAAATGACTTCAAACAcattaaacttttgaaaagaatt
attttaatGATGTCCTAGAAAAGATTTCATGGATACTAAGGTTTGACCCT
TACTCTCGTggaatttttagtttttgatatGTTTCGTCACTCTGTTTGTA
GTGTTTTATGTTATCATCTTTGATTATTTCAGCTGTAGATATGTGGGCTG
CTGGTGTTGTTTTCTTATGTTTGTTATCAAGACGTTATCCATTCTTCAAA
GCTAAAGACGATATGGAAGCCCTCTCTCAAATAATTGTCCTCTTTGGCAg
taagaaaattaagaaaatggcTGACTCGATTGGTAAGGTCTCCTTCTGTT
TCAGGACATCAATCTGCCTGACTCAGAGAAATTAAGCCCTTGCATAGATA
AAAGTCTACTTctgactaaattttgaaaaaatgcaatttaGAACGGAAAA
CCGACATCTATGACCTATCAATAATTTCCCAATTATCGTTCACTTTCCAA
AGAGTAGCGCGAAATCTGATTATCTGTTTTTGATCATCTTCACCAAAGAG
AAATCAATATGGCACGATACTCTCGGGCCACTTAAACAATGTCTTCCAGT
ATATCTCATTGAGTGGTTTTCACACTAGCCTTTACTCAACCTTACGTTAA
GCATTTACAGCTAAGAtacttcattttttgaattcgCATGCTATGAATAA
TTCTATAGATAATAAATTTGTGCTACTTAGAAACTTTTATAGTTTATGGT
TTGTGACTTCACTTGATCCAAATCCATGTCAGAGAATGGTCAATAAATTT
GGGGAAGCCTTATAAACCATCGTCaatgaaacttttgaatttcccttttt
ctctACAGGAAAAACTTTCGATTGTTCACCTCCAGTAGAGAATCCGGACA
CTTTGAAAGTTATCTGTGAAAAATTAGCTCGCAGACAATGCTCTTTACAT
AGAGACTACAAAGAAGGATCTGCAAAACGAAAACTTAGTGATCCAAGTGC
AGCAGCCACTAATAGTCCAAACAAGAAACAAGTAAGCGAGACAATAATTA
AAGACTCTAATCAAAGTAATCGAATCTTAGCCGACATAACATTGGGTAAG
AACCGACTGACTCAATCAGAATCGACCTCAAAATGTACGAGTTCTATTTC
AAAGTCTAAAAAATCTAAACAACCAGTTTGTGCTTGTATACCTGAAAGTG
CGTATGATTTGTTGGGGAAACTACTTGAACTGAACCCTGATGATCGAATC
AGTGCATCTGATGGTTTAAAACATCCGTTTATCACACATTATTGAGCGTG
GTTAGTTATCATTATAAAGAATCATTGCTAATTGGTGCTTGTGCTTTTTA
CCGATTTTATGtttagaaaagtttttgaagaCCTGGATTGACTGGATTCG
TTCGTTcggtttttttgttttctacatttttttaaCTCCCTCCAAAGAAT
CACCCATTTGACTGTCATTAAAATTTTTATGTatggttctttttattatt
atggGTTGTTTTTCAACAATAAAGAGTGAATTGCATTCAAACCGTGCAGT
CATATTTTAtggtttaagaaaaattttgagagcatTGCCGTTGGTAGACT
CAAATATTTGAATAACAAATAATAGacgtttttgatgttttaaagTGTGC
CCGGAAAAAAAGTGGTGCACCCATACAAAGGAAAATTTGTATGATTTTTG
CAAGACACTACATTAAAAAACATTTATTAAAAATAATGCAGttttagttt
tgtttgtttttagcatacttttgtatatattttgaaTAAAGATAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005302XLOC_005302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009473-exon-sc0000095-1491911889:406073..406126TCONS_00009473-exon-sc0000095-1491911889:406073..406126Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1510915933:406073..406126TCONS_00009473-exon-sc0000095-1510915933:406073..406126Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1575043694:406073..406126TCONS_00009473-exon-sc0000095-1575043694:406073..406126Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1491911889:414435..414549TCONS_00009473-exon-sc0000095-1491911889:414435..414549Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1510915933:414435..414549TCONS_00009473-exon-sc0000095-1510915933:414435..414549Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1575043694:414435..414549TCONS_00009473-exon-sc0000095-1575043694:414435..414549Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1491911889:414697..414783TCONS_00009473-exon-sc0000095-1491911889:414697..414783Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1510915933:414697..414783TCONS_00009473-exon-sc0000095-1510915933:414697..414783Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1575043694:414697..414783TCONS_00009473-exon-sc0000095-1575043694:414697..414783Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1491911889:416077..416206TCONS_00009473-exon-sc0000095-1491911889:416077..416206Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1510915933:416077..416206TCONS_00009473-exon-sc0000095-1510915933:416077..416206Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1575043694:416077..416206TCONS_00009473-exon-sc0000095-1575043694:416077..416206Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1491911889:416654..416747TCONS_00009473-exon-sc0000095-1491911889:416654..416747Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1510915933:416654..416747TCONS_00009473-exon-sc0000095-1510915933:416654..416747Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1575043694:416654..416747TCONS_00009473-exon-sc0000095-1575043694:416654..416747Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1491911889:417551..417693TCONS_00009473-exon-sc0000095-1491911889:417551..417693Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1510915933:417551..417693TCONS_00009473-exon-sc0000095-1510915933:417551..417693Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1575043694:417551..417693TCONS_00009473-exon-sc0000095-1575043694:417551..417693Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1491911889:418025..418089TCONS_00009473-exon-sc0000095-1491911889:418025..418089Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1510915933:418025..418089TCONS_00009473-exon-sc0000095-1510915933:418025..418089Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1575043694:418025..418089TCONS_00009473-exon-sc0000095-1575043694:418025..418089Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1491911889:418354..418468TCONS_00009473-exon-sc0000095-1491911889:418354..418468Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1510915933:418354..418468TCONS_00009473-exon-sc0000095-1510915933:418354..418468Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1575043694:418354..418468TCONS_00009473-exon-sc0000095-1575043694:418354..418468Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1491911889:418792..418874TCONS_00009473-exon-sc0000095-1491911889:418792..418874Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1510915933:418792..418874TCONS_00009473-exon-sc0000095-1510915933:418792..418874Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1575043694:418792..418874TCONS_00009473-exon-sc0000095-1575043694:418792..418874Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1491911889:420667..420816TCONS_00009473-exon-sc0000095-1491911889:420667..420816Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1510915933:420667..420816TCONS_00009473-exon-sc0000095-1510915933:420667..420816Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1575043694:420667..420816TCONS_00009473-exon-sc0000095-1575043694:420667..420816Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1491911889:422281..423220TCONS_00009473-exon-sc0000095-1491911889:422281..423220Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1510915933:422281..423220TCONS_00009473-exon-sc0000095-1510915933:422281..423220Clytia hemisphaericaexon
TCONS_00009473-exon-sc0000095-1575043694:422281..423220TCONS_00009473-exon-sc0000095-1575043694:422281..423220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:406073..423220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.499985	0.0983428	24.1103	48.8269	0.0304161	0.969339	1.33963e-06	4.30391e-08	0.349249	0.201132	1.307e-07	0.000123125	0	1.65519	0.173316	1.57833e-05	0.000109647	0.00034482	0.278996	3.06655e-08	4.00101e-09	0.155567	0.0230227	4.40834	0.396589	0.00162326	1.6212	0.000272161	6.38735e-09	1.35534
Blast
[Close]
BLAST of TCONS_00009473 vs. Swiss-Prot (Human)
Match: CDC7 (Cell division cycle 7-related protein kinase OS=Homo sapiens GN=CDC7 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.929e-44
Identity = 85/204 (41.67%), Postives = 126/204 (61.76%), Query Frame = 1 
Query:   70 KMENKKLLSPTRQSLFRACKSPAKQE-DIRIPEPEKKIKLGADLLNAFPEIAENFDIIKKVGEGTFSKVFLA--KMKCDSSKKVAFKHLVPTSSPGRIENELKCLQELGNKNNVLGIKTTLRRNDHIVFVLPYFPYRKFNDVMDRMSANDIQNYMRNLLIALKHVHSYKIIHRDIKPSNFLYCQETDSYALIDFGLAMPVPGTK 672
            +M+     SP R   F+A  S  K E + ++   +K I+    L  A P+++  F I  K+GEGTFS V+LA  +++    +K+A KHL+PTS P RI  EL+CL   G ++NV+G+K   R+NDH+V  +PY  +  F D+++ +S  +++ YM NL  ALK +H + I+HRD+KPSNFLY +    YAL+DFGLA     TK
Sbjct:    8 QMDEPMAFSPQRDR-FQAEGSLKKNEQNFKLAGVKKDIE---KLYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTK 207

HSP 2 Score: 135.961 bits (341), Expect = 1.125e-33
Identity = 87/235 (37.02%), Postives = 122/235 (51.91%), Query Frame = 1 
Query:  784 CNICRNRPRQKAPRAGTPGFRSPEVLMRYPNQTTAVDMWAAGVVFLCLLSRRYPFFKAKDDMEALSQIIVLFGSKKIKKMADSIGKTFDCSPPVENPDTLKVICEKLARRQCSL---------HRDYKEGSAKRKLSDPSAAATNSPNKKQVSETIIKDSNQSNRILADITLGKNRLTQXXXXXXXXXXXXXXXXXXQPVCACIPESAYDLLGKLLELNPDDRISASDGLKHPFI 1461
            C+IC +R +Q APRAGTPGFR+PEVL + PNQTTA+DMW+AGV+FL LLS RYPF+KA DD+ AL+QI+ + GS++  + A + GK+  CS  V   D L+ +CE+L     S          H  ++   +++     S      P +   +     DSN       +         +                        +P+ AYDLL KLL+LNP  RI+A + L HPF 
Sbjct:  360 CSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQD-LRKLCERLRGMDSSTPKLTSDIQGHASHQPAISEKTDHKASCLVQTPPGQYSGNSFKKGDSNSCEHCFDEYNTNLEGWNE------------------------VPDEAYDLLDKLLDLNPASRITAEEALLHPFF 569
The following BLAST results are available for this feature:
BLAST of TCONS_00009473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC74.929e-4441.67Cell division cycle 7-related protein kinase OS=Ho... [more]
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