TCONS_00009505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009505
Unique NameTCONS_00009505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1164

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009505 ID=TCONS_00009505|Name=TCONS_00009505|organism=Clytia hemisphaerica|type=transcript|length=1164bp
NAAGAACAGGAAATCTCAAATCCTTTCAAAAATCATAATATTGGGAAGTT
GTCCTTGGATAGGCGAATGGGCCAATTGGGGAACATGGTCATCATGCCCG
ACTGGAATCTGTCCTTCCGGCAATCGACAGCCTCCTAAGACGACCAGGAC
CAGATATTGtatgttgaaaaataataatgaaaCATATTTGGAAAGTCGTG
ATTGCAAAGGTTATCGTACGGACAGTAAAAATTGTGGTTTGATGAAATGT
ACTACTGATGTTTCATCAAAAGaTCAAGTAATCAATGGTCGCACCGTTAC
CATCACTACACAAATTGGAATAGCGTTCGGTGTTTTAACCCTTTCCATTA
TTTTGATTGTTGTATTTTACCGGACCATCAAGAATCGTCAAGAATTTAAG
TTGGTGACTGAGCCAAATCGTGTTACAGaaCATTCAACTGTATATATCTC
ACATTTGACAATTGATGAAACCCAAGAACGTTCTTTATTGAATCTTGTAC
ACTTTATATCAACTTATGGCATCAGACCTAAGCTAGATATTTTATGTCAA
GTTgaaatcaatgatgctggtggACTTCATAATTGGATACCTGATGTCCT
GACGAAAATCGATACCGTCATTCTACTCATCACCAAAAAATATATCGAGg
cATTGACATCTATCAAAGAAAACGATTTGAAGTTAAATGAGCAGgtttgt
aaaatacacactgAATTTAATCTAATCAAGAAAAGACTGTATCAATCCAA
ACAACAGAACCCGAAACTTGTAATTCTATTGGACGATAAAATAAAGACTG
AAATGTTACCAAAAGATCTTTCTGGTCGAACATTTTGTTTTCTTCCAAAG
AGATATGATCAAAAAGACGACGAACGTTGTAATAAATTACTTGGACATTT
ATTAAATGTCGAACCGATTCAAATTCAGTGACGCTTTTGTTTGGATTTGA
TTGATTACGCCAATCTCGTGCCCAGATCACTTTCTGATTTTACTGATTGA
CGTTTCAACGTGAGTGCTATCAGAATAATCACAAAAATacgaactaaggg
actgggttctGGTTTGGTTTACAGCTTTTCGAAGTTCATTGATGGCGCTG
TGATAATATTTTCCGCTAATGACCTAAATGATAGCGGGTTTATGTATTGA
TCATATTaagaaag
Run BLAST on NCBI

transcript from alignment at sc0000095:219931..224829-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009505 ID=TCONS_00009505|Name=TCONS_00009505|organism=Clytia hemisphaerica|type=transcript|length=4899bp|location=Sequence derived from alignment at sc0000095:219931..224829- (Clytia hemisphaerica)
NAAGAACAGGAAATCTCAAATCCTTTCAAAAATCATAATATTGGGAAGTT
GTCCTTGTAAGTAAGCAATATGTTTTATCCGACAACTTTAATTGAGAACA
TCTGTTTAAGTTCTGTATATTTAGAGTGAGATACACTTTCATTTTGATAT
CTTATTTAGTACTCTCTTGGGAAATAAAACCCGAACGCGCTCCAAAGGTT
TATAGTGCATGTGTATTGTTTTGATATCTGGTAAATCCAAATTTTGCTTA
TACAAGCACAATGATGAGAATTTCAGATTCAATCTTATTCCGTGGACCTT
GCATTACGTTGTTTCAACCTTCATCTAACGGTATATGGACATTATATAGA
CGTTGAAATAAGGTTGTGTGCTGGCCGGGAAAAGGCATGTGCATGGTAAG
TAATAAAGTGAGTTATCCCCGACTTCAGTTTCCCAGTTATCTTCCTCTTC
AAGCCTACACTCTACAAATAACCCTCAAATGTTCATCATAGGGATAGGCG
AATGGGCCAATTGGGGAACATGGTCATCATGCCCGACTGGAATCTGTCCT
TCCGGCAATCGACAGCCTCCTAAGACGACCAGGACCAGATATTGTATGTT
GAAAAATAATAATGAAACATATTTGGAAAGTCGTGATTGCAAAGGTTATC
GTACGGACAGTAAAAATTGTGGTTTGATGAAATGTACTACTGATGTTTCA
TCAAAAGGTAAGTATTTGTTACTCTTAGGGGCTTCAGGGACCTAATAAAC
GCCCCCTCCCTGTTTGTTACTTTTTTCTTTTTTCCAACCCCCTGGACCAA
CATTGGGACCCCTCTCCTAATTTGACACCTAAGAACTTTGTACCGCATAT
AATTAAAAATCCACGCTACTAAAGAATCTGAAACTTACCCCAGTCTTCCG
TCTCAAACGAATTTACGTCTCAGCGAGGTACAAAAAGAGGCTTTTTAGTC
TCCAGATTCAACAAAATTCTGCAAAATGTGAAAGATCTTGCGCCTAATTT
GCTGCTTACAGTTCATTTCCATCTCAGACAAATAAAGCTTTATTTTGACC
ATTGCTAAAGTATTTAAAGTAAAAACTCAGAAAAATCTGCCATCTTAAAC
TTTATTTGTTAGTCCAGTAGAATTTCATCAAAATAGGGTCTAGCTAGAAA
AAAAAATTATTTAATGTTTCTATATATCGTTGGAAAGATAATTTTACCCA
ACATTCGAAAGCTGATAAAATTATCTTTCCAACGGTATATAGAAACCTTT
TATAAAATTTTTGGTCAAAAAGTCAAAAAGGTTGACTCAAAATTCTACTG
GACTATATATGATTTTATGTTGCCATTGAACAATAAGATGTACCAAAAAA
CTATAGAGTCGTCGTATCCCTAGGATTCGATTCATTCGGTCATTCGAATT
GCGACATAAAACTTTCGTTTGCCTAAAAAAGGTTCACGGTTTCTCTCTAG
TCTTTGGTTATATATTATTGCTTCTAAATTACTCTGTACTAGATGGGCAA
AGGAGCAAGGAAATTTGTAATTACAAACTACAAATGTATTTCATTTTCAA
AATTGAACTTTTTTACAAAGTATAACTCATTATTTTTTATATTTATAGAT
CAAGTAATCAATGGTCGCACCGTTACCATCACTACACAAATTGGAATAGC
GTTCGGTGTTTTAACCCTTTCCATTATTTTGATTGTTGTATTTTACCGGA
CCATCAAGAATCGTCAAGAATTTAAGTTGGTGACTGAGCCAAATCGTGTT
ACAGGTGAATGATTTAATTGTTTAATATCAAGATGGCCTTTCTGCAATAT
TGTGCGTACACAGCCCCTATTGAGGATATCCATTTTTTGAGCTCCACAGC
TTTGTCTGACTTAAAAATAAAGACCTCCCAGGATATCCTGGATGTCCAAG
TAGATGGAAGGGTTAAGGATATCCATGAATTTCGTACCCCCTGGATGTTC
GATTTTGTCAACAGCGACACGGACTATTTCTGCCCAATGCGTGATACATT
TTATTTGTTTGTGCTCTTCATTTTGTGCAATGAGGGTAGTATTTCGTTAA
ATTCAGATTCTTAAAACCTTTTGTACGACGGCCCCTAAGGCTCACCACGC
ACTTCCAGTTCTTATAAAATTTGTGAACTAGGACTGTCTAGGGTCATGGC
CCAGAAGGCTCACGAGACACTGCACACTTCTGAGTTTTTTTGCGATGACA
CTGCACACTTCTAAAAATATTTTAGAGACGTAAAAGTCTCCTTCGAAAGA
TAGCCGTTCTGGTCAGCAAAATAGATACCGAGTTGTAATAAATGAGTTGA
TGATAATAGCGAAATAATTTGTGGTTAAAGTTGATATTTGATCACTTTTT
GCTTCCCCGATTTAAGCCCGAAAATTCCCCGATTTTTGCCCCCGGGGGGG
GGGGGATTTTGCTGACCAGCACTTAACTCGGAAATTTTGACCTGTAGCAT
TTGCTATAAACAACTCGGAAATTTTAACTCATTTTGCGTAACTCGACATT
CATTTTAAAGACCAAACAAATTTTTATTGCGCGGGCCGCTCGCTTGGAAA
TTTCCCGCCGTGACAAAAAGTCAGAAGTGCGCAGTGTCACTTGAGCCTTC
TGGGCCATTGACTTTTGTTTCCAATGCTCGATTTTTTTCTTCGAGATAGA
TTGAACGAAAAGAAAACAAGAAAACAAATTTGATCACGGATCACAAAATA
CAGCATCGAATCCAATGCTCTTAATTTTACTGTCCAAAATTTTTTCAATA
GAACATTCAACTGTATATATCTCACATTTGANCTGACTTAAAAATAAAGA
CCTCCCAGGATATCCTGGATGTCCAAGTAGATGGAAGGGTTAAGGATATC
CATGAATTTCGTACCCCCTGGATGCTCGATTTTGTCAACAGCGACACGGA
CTATTTCTGCCCAATGCGTGATACATTTTATTTGTTTGTGCTCTTCATTT
TGTGCAATGAGGGTAGTATTTCGTTAAATTCAGATTCTTAAAACCTTTTG
TACGACGGCCCCTAAGGCTCACCACGCACTTCCAGTTCTTATAAAATTTG
TGAACTAGGACTGTCTAGGGTCATGGCCCAGAAGGCTCACGAGACACTGC
GCACTTCTGAGTTTTTTTGCGATGACACTGCACACTTCTAAAAATATTTT
AGAGACGTAAAAGTCTCCTTCGAAAGATAGCCGTTCTGGTCAGCAAAATA
GATACCGAGTTGTAATAAATGAGTTGATGATAATGGCGAAATAATTTGTG
GTTAAAGTTGATATTTGATCACTTTTTGCTTTCCCGATTTAAGCCCGAAA
ATTCCCCGATTTTTGCCACTGGGGGGGGGGGATTTTGCGGACCAGCAATT
AACTTGGAAATTTTAACCTGTAACATTTGCTATGAACAACTCATTTTGCG
TAACTCGACATTCAATTTAAAGACCAAACAAATTTTTATTGCGCGGGCCG
CTCGCTTGGAAATTTCCCGCCGTGACAAAAAGTCAGAAGTGCGCAGTGTC
ACTTGAGCCTTCTGGGCCATTGACTTTGCTTTCCAATGCTCGATTTTTTT
CTTTGAGATAGATTGAACGAAAAGAAAACAAGGAAAAAGATTTGATCACG
AATCACAAAATACAGCATCGAATCCAATGCTCTTAATTTTACTGTCCAAA
ATTTTTTCAATAGAACATTCAACTGTATATATCTCACATTTGACAATTGA
TGAAACCCAAGAACGTTCTTTATTGAATCTTGTACACTTTATATCAACTT
ATGGCATCAGACCTAAGCTAGATATTTTATGTCAAGTTGAAATCAATGAT
GCTGGTGGACTTCATAATTGGATACCTGATGTCCTGACGAAAATCGATAC
CGTCATTCTACTCATCACCAAAAAATATATCGAGGTAAGAGGTTCTTTTT
TTCTTTCCTAGGTGGCACAAAGACAAAACAGCTAGACAAGAAAACTAGTC
TGTTAATTGATAATGTTAGTAATTGGGAGTCAAAAAAAGGAGCTACGTAG
GAAATCTAGGAAAAGTTGTCGAATGGGTGCGGATTTTTGAAAAAATCTTC
ACTTAAGGGAGTGTCTTGGTTTTCACGTTTTTTATAAGAACATCCTAAAT
TTTTGAAGCCTTCAGATGTTCTTAAATTTTTGAGTTTAAAGCCTAAAAAT
GTCCTTAAAATGTTCTTATTTTCACCATTTTGTTGGTATTTTTGTTCAAT
TTCCTCAGAAAATGGGTGTTTTAGAGTTTGCGACGCTTTAAAATGTTCTT
AACATGTTCTTGATATTTTTTCATCGAAACCTTATGTTCTTATATAGTTC
GTTTTTTTTACAAAAACGTGTACTCTTATCAACAACCTTCGATCAACGTT
TTAACAGTTAAATTGTGTTTTTCTTCATTTTCAGGCATTGACATCTATCA
AAGAAAACGATTTGAAGTTAAATGAGCAGGTTTGTAAAATACACACTGAA
TTTAATCTAATCAAGAAAAGACTGTATCAATCCAAACAACAGAACCCGAA
ACTTGTAATTCTATTGGACGATAAAATAAAGACTGAAATGTTACCAAAAG
ATCTTTCTGGTCGAACATTTTGTTTTCTTCCAAAGAGATATGATCAAAAA
GACGACGAACGTTGTAATAAATTACTTGGACATTTATTAAATGTCGAACC
GATTCAAATTCAGTGACGCTTTTGTTTGGATTTGATTGATTACGCCAATC
TCGTGCCCAGATCACTTTCTGATTTTACTGATTGACGTTTCAACGTGAGT
GCTATCAGAATAATCACAAAAATACGAACTAAGGGACTGGGTTCTGGTTT
GGTTTACAGCTTTTCGAAGTTCATTGATGGCGCTGTGATAATATTTTCCG
CTAATGACCTAAATGATAGCGGGTTTATGTATTGATCATATTAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005309XLOC_005309Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009505-exon-sc0000095-1575043694:224774..224829TCONS_00009505-exon-sc0000095-1575043694:224774..224829Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1575043694:224123..224338TCONS_00009505-exon-sc0000095-1575043694:224123..224338Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1575043694:223076..223231TCONS_00009505-exon-sc0000095-1575043694:223076..223231Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1575043694:220946..221166TCONS_00009505-exon-sc0000095-1575043694:220946..221166Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1575043694:219931..220445TCONS_00009505-exon-sc0000095-1575043694:219931..220445Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1510915933:224774..224829TCONS_00009505-exon-sc0000095-1510915933:224774..224829Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1510915933:224123..224338TCONS_00009505-exon-sc0000095-1510915933:224123..224338Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1510915933:223076..223231TCONS_00009505-exon-sc0000095-1510915933:223076..223231Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1510915933:220946..221166TCONS_00009505-exon-sc0000095-1510915933:220946..221166Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1510915933:219931..220445TCONS_00009505-exon-sc0000095-1510915933:219931..220445Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1491911889:224774..224829TCONS_00009505-exon-sc0000095-1491911889:224774..224829Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1491911889:224123..224338TCONS_00009505-exon-sc0000095-1491911889:224123..224338Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1491911889:223076..223231TCONS_00009505-exon-sc0000095-1491911889:223076..223231Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1491911889:220946..221166TCONS_00009505-exon-sc0000095-1491911889:220946..221166Clytia hemisphaericaexon
TCONS_00009505-exon-sc0000095-1491911889:219931..220445TCONS_00009505-exon-sc0000095-1491911889:219931..220445Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:219931..224829 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.235045	0.105112	0.0411516	0	0	0	0.0894275	0	0.0775529	0	0	1.45475	0.820871	0.0600928	0.128167	0	0.178526	0.177205	0	0	0	0.100415	0.270172	0.0322333	0.105132	23.1616	29.5402	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top