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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009518 ID=TCONS_00009518|Name=TCONS_00009518|organism=Clytia hemisphaerica|type=transcript|length=2378bp
CTTTGAAAGAGTTTTTGACTGCTCAAGAGGTACTCTTTAGTTAACTAAAA
AAAGTTAACAGATTTTTTGCTTACCAAAAGTTGTTGTGATAAGATGAAGC
TGAAGGCAGAAGCGTATATATGTATTAATGCATTCTTTGCATTTTGTTGT
GATCGAATGTGGCAATTTGCAACCGGTATACTTCTGGTACAACTAACACC
AAGTTCATTACGTCTGACTGCTTCGTATGGCCTTACTTTGTCAGTTATTG
CCATTGTTTTATCTCCCTTCCTTGGTGACTGGATCGACAAATCCCAGAGA
CTGAAAGTAGTTCAGATTTTATTGGCAGCTCAGAAAATTCTCGTTATTGC
ATGTGCAATTACTATCTACATCTGTATACAATACCAAAATGCAAGTTTGC
TACTGTTCTTTCAAATCCTGATTGTCTTGCTTGGATCTGCAGCAAATCTT
TTTTCACAAGGGCTGAAGATTGCCATTGGTAAAGATTGGATCATTGTTGT
GTGTAAGAACGATAAAGATATCTTGGCAAATACCAATGCGCTGGTTAGAA
GAATTGATCTTATAGTTGCCATAGTGGCACCTTTGGTGATTGGAGCACTG
ATGAGCCATATTTCAACCAGTGTCAGTATTGTTTTTATCTGTGTATGGAA
TATCGTATCTTTATTCTTGGAATATGGATCTATCCTCAAAGTCTACAAAA
TGACTCCAGCACTATCGATGAAACTTATCAACAAACAAAGTGTGGAACAG
AATGATGATCAACTTTCCTTGAAAATCTCCAATAGTTCGTCAGAAAACCA
AGAAAGAAGACCTTTAGCAGAATCCGAACATGACTCCAGTCAAGCTTCGA
TTACCGAAAACCCAACTTCCAGTAACCCATCAACCCTTTGTAATCTAGTC
GCCAAACGTCTCCAGTCAATGATATCAGGTTGGAGAATTTATTACCGGCA
AACTGtctttctggctggttgtgcttTATCGATGCTTTATTTAACTGTTA
TCGGAATGGGTGGAATCATAATCGGGTTTTCATATGCAATGGGGTTAAGT
GAACTGTACGTTAGCATTTTCATGGGTTTGGCATCTCTCTTTGGAGTCTT
TGGAACCTTCTTGTTCCCAAAGATCAGAAGAAGAATTGGTTTAGCTAAAA
CTGGAATAATTAGTTTCTCTTTGCAATTATCCATGTTAGTGATTTGTGGT
GCCTCTATATGGACACCTGGAAGTCCAAGTAATCTATTTAGTGGCCAAGT
TTACAAGGAAACATCTTCAGTGGGCAATTTTACGGAGGTCGATACACCTC
CAATATTTATGAATGACTCAATCTACCTCAATacaacaaatcaaacaaga
gCTGCAAATACTCCTAAGGAAAACTCTACCATCTCGACATTAAACAAAGA
CAACAAAAATCCAACTACACCAATAAAACCAACAAGGATTTTAACCTCGG
TCATTGTCCTATTGTCTGGTATAGTGTTATCAAGGACAGGTCTATGGCTT
TCAGATCTCACCATAATTCAACTCCAACAAGAGCATGTACCTGAAAGCGA
ACGTGGAATAGTCAGTGGTGTTCAGAATTCTACAAATCATTCATTTGAAA
TTCTCATGTTTTTGTTGACTATTGCATTCCCAAATGTTGAACAATTTGGA
ATCTTAATTCTTATATCAATTAGTGCCATTATAAGTGCTGGTATGGTTTA
CTTGATATTTGTGTCAAGGTTTCAGCAGACTTTTCTGAATAGTAAAGAGA
GAATTACGGAAAATTCAGAAAGGCAAGATCTGTCTGTTATAACTTAAACT
CCATGGTACAGGAGGGATTTTATTAATGGTAATTTAGATTGGATATTAAA
TGATCTTTGATTAATTAAGAATAATGTggttttatttaatttctttACTC
TGAACCCGGGGAGGGGGGTACTAGacttgcgagctgacgggggtaccgcc
cgactttcgacctttggacccttaccgggactaaaaaggagaaaacaaag
gaaaattttgggaattttacgatcCTTAGCGgaacaaatttgaccaattc
tgaccaaatttcgatctttccgggggcgtaaaaagttgaaattttctcat
ttctccaacccttagtgggactgaaatttgattttgtgatttttccgacc
catagcgggactttggaaatccaaaaacatatcgtaccctccatttgcct
aagtaccccccccccgggactctAAACCTTTTTGTGGACATGATGATGTA
TTCAAAGAATAAATTTTGGAAGGAAATATACCAGATTTTTACCATTTAGC
TATTTATTTAATTAAAACCCATCAAATAAAATTTCCCtagatactttaat
cgtagaaatatatatattagcgagtcag Run BLAST on NCBI protein sequence of TCONS_00009518-protein >TCONS_00009518-protein ID=TCONS_00009518-protein|Name=TCONS_00009518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp
MKLKAEAYICINAFFAFCCDRMWQFATGILLVQLTPSSLRLTASYGLTLS
VIAIVLSPFLGDWIDKSQRLKVVQILLAAQKILVIACAITIYICIQYQNA
SLLLFFQILIVLLGSAANLFSQGLKIAIGKDWIIVVCKNDKDILANTNAL
VRRIDLIVAIVAPLVIGALMSHISTSVSIVFICVWNIVSLFLEYGSILKV
YKMTPALSMKLINKQSVEQNDDQLSLKISNSSSENQERRPLAESEHDSSQ
ASITENPTSSNPSTLCNLVAKRLQSMISGWRIYYRQTVFLAGCALSMLYL
TVIGMGGIIIGFSYAMGLSELYVSIFMGLASLFGVFGTFLFPKIRRRIGL
AKTGIISFSLQLSMLVICGASIWTPGSPSNLFSGQVYKETSSVGNFTEVD
TPPIFMNDSIYLNTTNQTRAANTPKENSTISTLNKDNKNPTTPIKPTRIL
TSVIVLLSGIVLSRTGLWLSDLTIIQLQQEHVPESERGIVSGVQNSTNHS
FEILMFLLTIAFPNVEQFGILILISISAIISAGMVYLIFVSRFQQTFLNS
KERITENSERQDLSVIT Run BLAST on NCBI transcript from alignment at sc0000095:323140..325692- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009518 ID=TCONS_00009518|Name=TCONS_00009518|organism=Clytia hemisphaerica|type=transcript|length=2553bp|location=Sequence derived from alignment at sc0000095:323140..325692- (Clytia hemisphaerica)
CTTTGAAAGAGTTTTTGACTGCTCAAGAGGTACTCTTTAGTTAACTAAAA
AAAGTTAACAGATTTTTTGCTTACCAAAAGTTGTTGTGGTGAGTAATTTT
TATGAAATTGAATTTCAGAAAAACAGTTCTTGATCTAATCTTTTGATGAG
AATAAGGTCGACTTAATTTTAACGTAAATTTTCTCCTTAGATGAAACCTT
TCAAAAACATTTTCACATTCATTCAGAATAAAGTTAATTTTTATTTCTTT
TTCTTCATTTAAGATAAGATGAAGCTGAAGGCAGAAGCGTATATATGTAT
TAATGCATTCTTTGCATTTTGTTGTGATCGAATGTGGCAATTTGCAACCG
GTATACTTCTGGTACAACTAACACCAAGTTCATTACGTCTGACTGCTTCG
TATGGCCTTACTTTGTCAGTTATTGCCATTGTTTTATCTCCCTTCCTTGG
TGACTGGATCGACAAATCCCAGAGACTGAAAGTAGTTCAGATTTTATTGG
CAGCTCAGAAAATTCTCGTTATTGCATGTGCAATTACTATCTACATCTGT
ATACAATACCAAAATGCAAGTTTGCTACTGTTCTTTCAAATCCTGATTGT
CTTGCTTGGATCTGCAGCAAATCTTTTTTCACAAGGGCTGAAGATTGCCA
TTGGTAAAGATTGGATCATTGTTGTGTGTAAGAACGATAAAGATATCTTG
GCAAATACCAATGCGCTGGTTAGAAGAATTGATCTTATAGTTGCCATAGT
GGCACCTTTGGTGATTGGAGCACTGATGAGCCATATTTCAACCAGTGTCA
GTATTGTTTTTATCTGTGTATGGAATATCGTATCTTTATTCTTGGAATAT
GGATCTATCCTCAAAGTCTACAAAATGACTCCAGCACTATCGATGAAACT
TATCAACAAACAAAGTGTGGAACAGAATGATGATCAACTTTCCTTGAAAA
TCTCCAATAGTTCGTCAGAAAACCAAGAAAGAAGACCTTTAGCAGAATCC
GAACATGACTCCAGTCAAGCTTCGATTACCGAAAACCCAACTTCCAGTAA
CCCATCAACCCTTTGTAATCTAGTCGCCAAACGTCTCCAGTCAATGATAT
CAGGTTGGAGAATTTATTACCGGCAAACTGTCTTTCTGGCTGGTTGTGCT
TTATCGATGCTTTATTTAACTGTTATCGGAATGGGTGGAATCATAATCGG
GTTTTCATATGCAATGGGGTTAAGTGAACTGTACGTTAGCATTTTCATGG
GTTTGGCATCTCTCTTTGGAGTCTTTGGAACCTTCTTGTTCCCAAAGATC
AGAAGAAGAATTGGTTTAGCTAAAACTGGAATAATTAGTTTCTCTTTGCA
ATTATCCATGTTAGTGATTTGTGGTGCCTCTATATGGACACCTGGAAGTC
CAAGTAATCTATTTAGTGGCCAAGTTTACAAGGAAACATCTTCAGTGGGC
AATTTTACGGAGGTCGATACACCTCCAATATTTATGAATGACTCAATCTA
CCTCAATACAACAAATCAAACAAGAGCTGCAAATACTCCTAAGGAAAACT
CTACCATCTCGACATTAAACAAAGACAACAAAAATCCAACTACACCAATA
AAACCAACAAGGATTTTAACCTCGGTCATTGTCCTATTGTCTGGTATAGT
GTTATCAAGGACAGGTCTATGGCTTTCAGATCTCACCATAATTCAACTCC
AACAAGAGCATGTACCTGAAAGCGAACGTGGAATAGTCAGTGGTGTTCAG
AATTCTACAAATCATTCATTTGAAATTCTCATGTTTTTGTTGACTATTGC
ATTCCCAAATGTTGAACAATTTGGAATCTTAATTCTTATATCAATTAGTG
CCATTATAAGTGCTGGTATGGTTTACTTGATATTTGTGTCAAGGTTTCAG
CAGACTTTTCTGAATAGTAAAGAGAGAATTACGGAAAATTCAGAAAGGCA
AGATCTGTCTGTTATAACTTAAACTCCATGGTACAGGAGGGATTTTATTA
ATGGTAATTTAGATTGGATATTAAATGATCTTTGATTAATTAAGAATAAT
GTGGTTTTATTTAATTTCTTTACTCTGAACCCGGGGAGGGGGGTACTAGA
CTTGCGAGCTGACGGGGGTACCGCCCGACTTTCGACCTTTGGACCCTTAC
CGGGACTAAAAAGGAGAAAACAAAGGAAAATTTTGGGAATTTTACGATCC
TTAGCGGAACAAATTTGACCAATTCTGACCAAATTTCGATCTTTCCGGGG
GCGTAAAAAGTTGAAATTTTCTCATTTCTCCAACCCTTAGTGGGACTGAA
ATTTGATTTTGTGATTTTTCCGACCCATAGCGGGACTTTGGAAATCCAAA
AACATATCGTACCCTCCATTTGCCTAAGTACCCCCCCCCCGGGACTCTAA
ACCTTTTTGTGGACATGATGATGTATTCAAAGAATAAATTTTGGAAGGAA
ATATACCAGATTTTTACCATTTAGCTATTTATTTAATTAAAACCCATCAA
ATAAAATTTCCCTAGATACTTTAATCGTAGAAATATATATATTAGCGAGT
CAG Coding sequence (CDS) from alignment at sc0000095:323140..325692- >TCONS_00009518 ID=TCONS_00009518|Name=TCONS_00009518|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at sc0000095:323140..325692- (Clytia hemisphaerica)
ATGAAGCTGAAGGCAGAAGCGTATATATGTATTAATGCATTCTTTGCATT
TTGTTGTGATCGAATGTGGCAATTTGCAACCGGTATACTTCTGGTACAAC
TAACACCAAGTTCATTACGTCTGACTGCTTCGTATGGCCTTACTTTGTCA
GTTATTGCCATTGTTTTATCTCCCTTCCTTGGTGACTGGATCGACAAATC
CCAGAGACTGAAAGTAGTTCAGATTTTATTGGCAGCTCAGAAAATTCTCG
TTATTGCATGTGCAATTACTATCTACATCTGTATACAATACCAAAATGCA
AGTTTGCTACTGTTCTTTCAAATCCTGATTGTCTTGCTTGGATCTGCAGC
AAATCTTTTTTCACAAGGGCTGAAGATTGCCATTGGTAAAGATTGGATCA
TTGTTGTGTGTAAGAACGATAAAGATATCTTGGCAAATACCAATGCGCTG
GTTAGAAGAATTGATCTTATAGTTGCCATAGTGGCACCTTTGGTGATTGG
AGCACTGATGAGCCATATTTCAACCAGTGTCAGTATTGTTTTTATCTGTG
TATGGAATATCGTATCTTTATTCTTGGAATATGGATCTATCCTCAAAGTC
TACAAAATGACTCCAGCACTATCGATGAAACTTATCAACAAACAAAGTGT
GGAACAGAATGATGATCAACTTTCCTTGAAAATCTCCAATAGTTCGTCAG
AAAACCAAGAAAGAAGACCTTTAGCAGAATCCGAACATGACTCCAGTCAA
GCTTCGATTACCGAAAACCCAACTTCCAGTAACCCATCAACCCTTTGTAA
TCTAGTCGCCAAACGTCTCCAGTCAATGATATCAGGTTGGAGAATTTATT
ACCGGCAAACTGTCTTTCTGGCTGGTTGTGCTTTATCGATGCTTTATTTA
ACTGTTATCGGAATGGGTGGAATCATAATCGGGTTTTCATATGCAATGGG
GTTAAGTGAACTGTACGTTAGCATTTTCATGGGTTTGGCATCTCTCTTTG
GAGTCTTTGGAACCTTCTTGTTCCCAAAGATCAGAAGAAGAATTGGTTTA
GCTAAAACTGGAATAATTAGTTTCTCTTTGCAATTATCCATGTTAGTGAT
TTGTGGTGCCTCTATATGGACACCTGGAAGTCCAAGTAATCTATTTAGTG
GCCAAGTTTACAAGGAAACATCTTCAGTGGGCAATTTTACGGAGGTCGAT
ACACCTCCAATATTTATGAATGACTCAATCTACCTCAATACAACAAATCA
AACAAGAGCTGCAAATACTCCTAAGGAAAACTCTACCATCTCGACATTAA
ACAAAGACAACAAAAATCCAACTACACCAATAAAACCAACAAGGATTTTA
ACCTCGGTCATTGTCCTATTGTCTGGTATAGTGTTATCAAGGACAGGTCT
ATGGCTTTCAGATCTCACCATAATTCAACTCCAACAAGAGCATGTACCTG
AAAGCGAACGTGGAATAGTCAGTGGTGTTCAGAATTCTACAAATCATTCA
TTTGAAATTCTCATGTTTTTGTTGACTATTGCATTCCCAAATGTTGAACA
ATTTGGAATCTTAATTCTTATATCAATTAGTGCCATTATAAGTGCTGGTA
TGGTTTACTTGATATTTGTGTCAAGGTTTCAGCAGACTTTTCTGAATAGT
AAAGAGAGAATTACGGAAAATTCAGAAAGGCAAGATCTGTCTGTTATAAC
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009518-exon-sc0000095-1575043694:325605..325692 | TCONS_00009518-exon-sc0000095-1575043694:325605..325692 | Clytia hemisphaerica | exon |
| TCONS_00009518-exon-sc0000095-1575043694:323140..325429 | TCONS_00009518-exon-sc0000095-1575043694:323140..325429 | Clytia hemisphaerica | exon |
| TCONS_00009518-exon-sc0000095-1510915933:325605..325692 | TCONS_00009518-exon-sc0000095-1510915933:325605..325692 | Clytia hemisphaerica | exon |
| TCONS_00009518-exon-sc0000095-1510915933:323140..325429 | TCONS_00009518-exon-sc0000095-1510915933:323140..325429 | Clytia hemisphaerica | exon |
| TCONS_00009518-exon-sc0000095-1491911889:325605..325692 | TCONS_00009518-exon-sc0000095-1491911889:325605..325692 | Clytia hemisphaerica | exon |
| TCONS_00009518-exon-sc0000095-1491911889:323140..325429 | TCONS_00009518-exon-sc0000095-1491911889:323140..325429 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095 | supercontig | sc0000095:323140..325692 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0034755 | iron ion transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005381 | iron ion transmembrane transporter activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0034755 |
iron ion transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005381 |
iron ion transmembrane transporter activity |
Blast
BLAST of TCONS_00009518 vs. Swiss-Prot (Human)
Match: S40A1 (Solute carrier family 40 member 1 OS=Homo sapiens GN=SLC40A1 PE=1 SV=1) HSP 1 Score: 301.597 bits (771), Expect = 2.090e-91 Identity = 206/541 (38.08%), Postives = 303/541 (56.01%), Query Frame = 1
Query: 151 DRMWQFATGILLVQLTPSSLRLTASYGLTLSVIAIVLSPFLGDWIDKSQRLKVVQILLAAQKILVIACAITIYICIQYQN-------ASXXXXXXXXXXXXGSAANLFSQGLKIAIGKDWIIVVCKNDKDILANTNALVRRIDLIVAIVAPLVIGALMSHISTSVSIVFICVWNIVSLFLEYGSILKVYKMTPALSMKLINKQSVEQNDDQLSLKISNSSSENQERRPLAESEH--DSSQASITENPTSSNPSTLCNLVAKRLQSMISGWRIYYRQTVFLAGCALSMLYLTVIGMGGIIIGFSYAMGLSELYVSIFMGLASLFGVFGTFLFPKIRRRIGLAKTGIISFSLQLSMLVICGASIWTPGSPSNLFSGQVYKETSSVGNFTEVDTPPIFMNDSIYLNTTNQTRAANTPKENSTISTLNKDNKNPTTPIKPTRILTSVIVLLSGIVLSRTGLWLSDLTIIQLQQEHVPESERGIVSGVQNSTNHSFEILMFLLTIAFPNVEQFGXXXXXXXXXXXXXGMVYLIFVSRFQQTFLNSK 1746
DRMW FA + LV+L +SL LTA YGL ++ +VL +GDW+DK+ RLKV Q L Q + VI C I + + +++ +L ILI+ + + ANL S I I +DWI+VV D+ LAN NA +RRID + I+AP+ +G +M+ S + FI WN+VS+ +EY + KVY+ TPAL++K K+ E QL+L ++ E +PL E H ++I E P T + +A+ ++ GW YY Q VFLAG L+ LY+TV+G I G++Y GLS +SI MG +++ G+ GT F +RR+ GL +TG+IS QLS L++C S++ PGSP +L S +++ S E TP + + +N + +AN E S S PI SV +L +G++ +R GLW DLT+ QL QE+V ESERGI++GVQNS N+ ++L F++ I PN E FG+L+LIS+S + ++Y RF Q L +K
Sbjct: 39 DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLTSCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEE-ETELKQLNLH------KDTEPKPL-EGTHLMGVKDSNIHELEHEQEP-TCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGSPLDL-SVSPFEDIRSRFIQGESITPTKIPEITTEIYMSNGSNSANIVPETSPES----------VPI------ISVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYF----RFAQNTLGNK 549
The following BLAST results are available for this feature:
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