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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009545 ID=TCONS_00009545|Name=TCONS_00009545|organism=Clytia hemisphaerica|type=transcript|length=1128bp
CTTCGcagaaatcaattttaaaggaAAGCAGTCATTTTTCACGatgctga
taactttattataCCTCTTAACTTTCAATTCACAAGGAATTGAATGTGGG
CTAGTCCGTTTCCGGTTTGTTGGTAGAAATGTGGCAATCTCTGGACAACC
AATACCTATGCATGAAATGGAATCaacacattttgatttttgttttcgtA
AATGCATTGTCATCAAGTGTCATTATATTGAATATGAAAAGTTAATGACA
ACGTCTACAGATGTGTGGAGTTGCAAGCTTTATGGATTGATTAGAAGTAT
ATCCGATCATTTGGTCTCCAAGCTTGTTAGTATATTATATAACGCAGAAC
AACCATACATAGATTGTGATGATTGGTTCAAAAGTGGTTACAAGAACAGT
GGTGTCTATGAAATCACTTTCAATGGAAAACAAAGAGATGTTTATTGCAC
CATGGATGATGTGAATAGCGAAGGTTGGACAGTCATTCAAAAGAGAATTG
ACGGTTCTGTTGACTTTAATCAATATTGGTCAGGATACAAAACAGGTTTT
GGAGAACCAGAAAGTGAATATTGGTTAGGGAATGATGACATTCATTTCTT
GACATCAATGCAAAACAGAGCTGTTTATCTCAAGATTTCggctacatctt
ttgaaggcgAATCCACGCTTGTCGTTTACAAAGGCTTCACAGTTGAAAAc
gaagaaaataaatataagCTTCACACAGGCAATTTTTTCTCGGGAAATTC
ACAACATAAGGATAATTTCCTTCGTCATAACAATATGTATTTTAGTACAC
CAGAATTTGATAACGACATGGGAACTGACAATTGCGCAGCTGATAGACTT
GCTGGTTTTTGGTACTTTTACACCAAATGGAAAATATTACAGCAATCAAT
CTGATTGTGTTTATAAAAGATCCTTACATTGGTACGATTTCAAGGGGAGG
GACTATTGCCTGAAAACCTTTGAAATGGCTATTCGAATCGCaaataatga
atgaaaaaaattggtcTTCGTATAATTATTTGCCACTTTTTATgcaccaa
aaataaaattaataacTTAATTTTTGTACATTTAATCGTTCAATTTGTTT
AAATATGTAAAATTCATAATAATGTTTC Run BLAST on NCBI protein sequence of TCONS_00009545-protein >TCONS_00009545-protein ID=TCONS_00009545-protein|Name=TCONS_00009545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
FAEINFKGKQSFFTMLITLLYLLTFNSQGIECGLVRFRFVGRNVAISGQP
IPMHEMESTHFDFCFRKCIVIKCHYIEYEKLMTTSTDVWSCKLYGLIRSI
SDHLVSKLVSILYNAEQPYIDCDDWFKSGYKNSGVYEITFNGKQRDVYCT
MDDVNSEGWTVIQKRIDGSVDFNQYWSGYKTGFGEPESEYWLGNDDIHFL
TSMQNRAVYLKISATSFEGESTLVVYKGFTVENEENKYKLHTGNFFSGNS
QHKDNFLRHNNMYFSTPEFDNDMGTDNCAADRLAGFWYFYTKWKILQQSI Run BLAST on NCBI transcript from alignment at sc0000095:103172..104299 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009545 ID=TCONS_00009545|Name=TCONS_00009545|organism=Clytia hemisphaerica|type=transcript|length=1128bp|location=Sequence derived from alignment at sc0000095:103172..104299 (Clytia hemisphaerica)
GAAACATTATTATGAATTTTACATATTTAAACAAATTGAACGATTAAATG
TACAAAAATTAAgttattaattttatttttggtgcATAAAAAGTGGCAAA
TAATTATACGAAgaccaatttttttcattcattatttGCGATTCGAATAG
CCATTTCAAAGGTTTTCAGGCAATAGTCCCTCCCCTTGAAATCGTACCAA
TGTAAGGATCTTTTATAAACACAATCAGATTGATTGCTGTAATATTTTCC
ATTTGGTGTAAAAGTACCAAAAACCAGCAAGTCTATCAGCTGCGCAATTG
TCAGTTCCCATGTCGTTATCAAATTCTGGTGTACTAAAATACATATTGTT
ATGACGAAGGAAATTATCCTTATGTTGTGAATTTCCCGAGAAAAAATTGC
CTGTGTGAAGcttatatttattttcttcgTTTTCAACTGTGAAGCCTTTG
TAAACGACAAGCGTGGATTcgccttcaaaagatgtagccGAAATCTTGAG
ATAAACAGCTCTGTTTTGCATTGATGTCAAGAAATGAATGTCATCATTCC
CTAACCAATATTCACTTTCTGGTTCTCCAAAACCTGTTTTGTATCCTGAC
CAATATTGATTAAAGTCAACAGAACCGTCAATTCTCTTTTGAATGACTGT
CCAACCTTCGCTATTCACATCATCCATGGTGCAATAAACATCTCTTTGTT
TTCCATTGAAAGTGATTTCATAGACACCACTGTTCTTGTAACCACTTTTG
AACCAATCATCACAATCTATGTATGGTTGTTCTGCGTTATATAATATACT
AACAAGCTTGGAGACCAAATGATCGGATATACTTCTAATCAATCCATAAA
GCTTGCAACTCCACACATCTGTAGACGTTGTCATTAACTTTTCATATTCA
ATATAATGACACTTGATGACAATGCATTTacgaaaacaaaaatcaaaatg
tgttGATTCCATTTCATGCATAGGTATTGGTTGTCCAGAGATTGCCACAT
TTCTACCAACAAACCGGAAACGGACTAGCCCACATTCAATTCCTTGTGAA
TTGAAAGTTAAGAGGtataataaagttatcagcatCGTGAAAAATGACTG
CTTtcctttaaaattgatttctgCGAAG Coding sequence (CDS) from alignment at sc0000095:103172..104299 >TCONS_00009545 ID=TCONS_00009545|Name=TCONS_00009545|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at sc0000095:103172..104299 (Clytia hemisphaerica)
TCAGATTGATTGCTGTAATATTTTCCATTTGGTGTAAAAGTACCAAAAAC
CAGCAAGTCTATCAGCTGCGCAATTGTCAGTTCCCATGTCGTTATCAAAT
TCTGGTGTACTAAAATACATATTGTTATGACGAAGGAAATTATCCTTATG
TTGTGAATTTCCCGAGAAAAAATTGCCTGTGTGAAGcttatatttatttt
cttcgTTTTCAACTGTGAAGCCTTTGTAAACGACAAGCGTGGATTcgcct
tcaaaagatgtagccGAAATCTTGAGATAAACAGCTCTGTTTTGCATTGA
TGTCAAGAAATGAATGTCATCATTCCCTAACCAATATTCACTTTCTGGTT
CTCCAAAACCTGTTTTGTATCCTGACCAATATTGATTAAAGTCAACAGAA
CCGTCAATTCTCTTTTGAATGACTGTCCAACCTTCGCTATTCACATCATC
CATGGTGCAATAAACATCTCTTTGTTTTCCATTGAAAGTGATTTCATAGA
CACCACTGTTCTTGTAACCACTTTTGAACCAATCATCACAATCTATGTAT
GGTTGTTCTGCGTTATATAATATACTAACAAGCTTGGAGACCAAATGATC
GGATATACTTCTAATCAATCCATAAAGCTTGCAACTCCACACATCTGTAG
ACGTTGTCATTAACTTTTCATATTCAATATAATGACACTTGATGACAATG
CATTTacgaaaacaaaaatcaaaatgtgttGATTCCATTTCATGCATAGG
TATTGGTTGTCCAGAGATTGCCACATTTCTACCAACAAACCGGAAACGGA
CTAGCCCACATTCAATTCCTTGTGAATTGAAAGTTAAGAGGtataataaa
gttatcagcatCGTGAAAAATGACTGCTTtcctttaaaattgatttctgC
GAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009545-exon-sc0000095-1491911889:103172..104299 | TCONS_00009545-exon-sc0000095-1491911889:103172..104299 | Clytia hemisphaerica | exon |
| TCONS_00009545-exon-sc0000095-1510915933:103172..104299 | TCONS_00009545-exon-sc0000095-1510915933:103172..104299 | Clytia hemisphaerica | exon |
| TCONS_00009545-exon-sc0000095-1575043694:103172..104299 | TCONS_00009545-exon-sc0000095-1575043694:103172..104299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095 | supercontig | sc0000095:103172..104299 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00009545 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 4.655e-31 Identity = 69/170 (40.59%), Postives = 97/170 (57.06%), Query Frame = 2
Query: 362 DCDDWFKSGYKNSGVYEITF-NGKQRDVYCTMDDVNSEGWTVIQKRIDGSVDFNQYWSGYKTGFGEPESEYWLGNDDIHFLTSMQNRAVYLKISATSFEGESTLVVYKGFTVENEENKYKLHTGNFFSGNSQHKDNFLRHNNMYFSTPEFDNDMGTDNCAADRLAGFWYF 868
+C D GY SG + I + + V C MD + GWTV Q+R+DGSVDF + W+ YK GFG E+WLGND+IH LT+ + L++ FEG YK F V +E KYKL G F G++ ++ HNN +FST + DND+ + NC A++ G W++
Sbjct: 117 NCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMD-TDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSE--LRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSA--GNSLTGHNNNFFSTKDQDNDVSSSNC-AEKFQGAWWY 280
The following BLAST results are available for this feature:
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