TCONS_00009549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009549
Unique NameTCONS_00009549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009549 ID=TCONS_00009549|Name=TCONS_00009549|organism=Clytia hemisphaerica|type=transcript|length=793bp
CTCTAGCTGACTGATTAATAAGGTGACGGTTATACTTACTTTTACTCACT
TTTGGATATTAAGGGTGACTTATAAGATTACTTACTTTTGGATAAGGGTC
ATATATAAATCGGGTTTAACTACAGTAAATTTCCAGATTGTAAGTAATCC
TAAATAAGCCTCAATATCAAAATGTTGTGCACTCATGCAGGGCGGACTAC
ATTATTATACATTCTGACCATTCCCTTACTTAATTGGAAAAACAGTATAC
CATATAGTGTATACCATTACTACTTGTCCATAAACCTATCTCTAATAAGG
GATACCCTGATCGAAGGAAAAGGTTAAGTGATCTGAGAGGTCCCCTCAAT
AGCTAGTAGGTTATGGTTGATCCCGATCGCCTAACGATGAACTTTCGTCA
CagtataaaatttatccactCATCTCCAAATTAATTTCAACGAGCCAATT
GACAAGTAAATTTGTCCCGATACTGAACCAACGTAAActaactacaatca
tggtcgtaatatttgagaaaaaagggaatttcctacgaaatcttataact
aCAAACGATTTTGaagtgctctaaattaggttggaagggtgtagagtttt
aactctgccaaatgttcaaaaatggtctaatagggctcagaatatagcct
ggaagtcaataaacccctcccgaattgaattACTCAAATAAATTCATCAA
CTAGCCAAAAagtgactttctcgccggaactttaaatcttgaaaaacgtt
aaaataaccggagttctcaatatatttcgaccatgattgtagc
Run BLAST on NCBI

transcript from alignment at sc0000095:154431..155223

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009549 ID=TCONS_00009549|Name=TCONS_00009549|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at sc0000095:154431..155223 (Clytia hemisphaerica)
gctacaatcatggtcgaaatatattgagaactccggttattttaacgttt
ttcaagatttaaagttccggcgagaaagtcactTTTTGGCTAGTTGATGA
ATTTATTTGAGTaattcaattcgggaggggtttattgacttccaggctat
attctgagccctattagaccatttttgaacatttggcagagttaaaactc
tacacccttccaacctaatttagagcacttCAAAATCGTTTGtagttata
agatttcgtaggaaattcccttttttctcaaatattacgaccatgattgt
agttagTTTACGTTGGTTCAGTATCGGGACAAATTTACTTGTCAATTGGC
TCGTTGAAATTAATTTGGAGATGagtggataaattttatactGTGACGAA
AGTTCATCGTTAGGCGATCGGGATCAACCATAACCTACTAGCTATTGAGG
GGACCTCTCAGATCACTTAACCTTTTCCTTCGATCAGGGTATCCCTTATT
AGAGATAGGTTTATGGACAAGTAGTAATGGTATACACTATATGGTATACT
GTTTTTCCAATTAAGTAAGGGAATGGTCAGAATGTATAATAATGTAGTCC
GCCCTGCATGAGTGCACAACATTTTGATATTGAGGCTTATTTAGGATTAC
TTACAATCTGGAAATTTACTGTAGTTAAACCCGATTTATATATGACCCTT
ATCCAAAAGTAAGTAATCTTATAAGTCACCCTTAATATCCAAAAGTGAGT
AAAAGTAAGTATAACCGTCACCTTATTAATCAGTCAGCTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005331XLOC_005331Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009549-exon-sc0000095-1491911889:154431..155223TCONS_00009549-exon-sc0000095-1491911889:154431..155223Clytia hemisphaericaexon
TCONS_00009549-exon-sc0000095-1510915933:154431..155223TCONS_00009549-exon-sc0000095-1510915933:154431..155223Clytia hemisphaericaexon
TCONS_00009549-exon-sc0000095-1575043694:154431..155223TCONS_00009549-exon-sc0000095-1575043694:154431..155223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:154431..155223 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.122398	0.118737	0.277053	0.0676961	0.163848	0.197036	0	0	0.0520764	0	0.123365	0	0.285903	0.882764	0.0345698	0.149853	0	0.0939132	0.0655679	0.0688948	0.0596809	0	0.0703861	0	0.262553	0.0584499	0	0.089948	0.136276	0.0695813
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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