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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009554 ID=TCONS_00009554|Name=TCONS_00009554|organism=Clytia hemisphaerica|type=transcript|length=2588bp
gaaaaatcttttctgtTGGCTTTTCTAAACTATTTTGTATAATATTAACA
ATCTAAATTAATGTTAGATCTCTTTAGTTATACATTATAACGCTCTTGAA
ATTGACATTGTtgcaataaaattatttttctttttatacagctattacta
aataaaaaatataaattgaaataTCATCCTGTTAAGAAAAAGGAATGGGt
cagaaaaagaagaataacAATAAAGCAGCCAAGAAGCCAGCTGGACCTGT
TACTTATGAAGTTACAGTGGGTACACCATCTAATACTGGTCGAGACAAAG
ATAGGAAGTTGAGGGATGAAGCTGAGAAAGAAGCCCAACAGGCCATGCAA
GTTGCTTTTATTCAGCAAATGAATGAAACTCAACGGTCGTATAAGACTGA
TGATGGTGATCAAAGCCAAGTGACTGGTGATGACGCCATTAAGCTAAAAT
GGAAATGGGCTAGTGGTTTGGATTGGAATCCTAGCAATATGTTACTCTCC
ACATGGCTTCGTGTTTTAGCTGCTGGAGACTATGATGGGATGTTGGCTGA
GATTGCTAAGACTCCTGAAGGAGAGTTAAAAGATTTATTAGAGCGACGTG
AAACGCTGtataatttttcagctttgtTTCACGTTATTAAAGGAGCTTCG
ACTACTCTGGATGAGACTGGTCGCCAGTATAATGCGAAAACGAAATTTGT
TGATCGatcaaaacaaccaaaacattTGCAATGTGCTGCAAAATTGATCG
AGCTGGGTGCCAATGTCAATGCGAGGGACATGTTAGGTGCCACAcctttg
tttttttgtgttaTGAGATATCGGAATCCAGTCACCATGAAGATTGGCAA
AATCTTGTTGGATAACGGAGCTGAAATCAATGCTACCAGTCGTCTTGGAG
AGACTGCACTTCTCCAACCTGTAATGATGAAAAGGTTCGACTGTGTTGAT
TTTCTAATGAAGTATGGTGCAGATCCATCGATTCGCGACTATGAGGGAGG
GTGTCCTCAAGATATGTCGGTTATGGATAGTGAAATTAAGGAACATTTAA
ATCCAAAGGAACCCTCCTCGTCGGTGCTGGATAAGTTGGTTTGTTCATTG
TGTGATCAATTTTATTCTAAGAGTCGTTGCACAGCTTGTTTTTTGGTGAG
ATATTGCAGCAAAGAATGTCAGTTGGTGCATTGGGATAAacataaaaaag
cttgtaaggAGAATAAGAAGAAATTCACTCAATTGCCTCTTATTGTTGCT
GGAGATAAGAAGGATGGCCTACCAAGTGATAATTTCATTGCCAAGGTTGA
GCTTGTCCTTAGCGAGGAAGAGGGAAATAAAATGTTGGTTTATGAGGAAA
CTAAAGGTCTCTTAGGACATGTGGTCTCCTCAGAAGCAGTTTATGGTGTT
GTTGAAACGAAATTGAAGTCTAAAGGTAGTGACTCGAAAGCTTATTTCCA
AGCTGTTGTTGATACTaaacaaaacattaaaatcaattttaatgattttg
tcACCCTTGAACTTGAATGGtaatttattttgatgaaaataatgttaatt
tatgttcattttttagtttagtttttttaatgttttctaagtttacgtag
tgttttaagtttttttccttatgtagagtttgcttacgttcaaaaagttt
taaacggaaggaaaagtcacgtaagaccctcttaatcaacaaaaactcta
atgttggggaaattcccaaaagacagccttacgaacgattttccgtaagg
tctaaagtaaaattttacgtgcatgtgaaaaagcTTAATATCCAAAACTA
AAATACACCTCTGTGGAACCTTTTATCCAGCTGATATTAAATGACGAAGG
AAAAATTAAATGACGCGGGATTTCGTTAGATTTCATTACTGAAATACCTA
GAATGTATTGAAAAATTATATCGTATTTCCCATCGGGTGAAATAGAGCTT
TCATTCAGTAAAAACGGTTgatagtttttggacctaccccggtggggtgg
aggtcctataaattcatctctgtccgtccgtccgttcgttaccagctttt
ctcgagattgatttttggtacaaaggtgcaaaacggtggtggccaaaatg
tgacggagcccgattttcgaaaaaaaaattttttggccaaatttgggcca
aaaaacggctaaaaaacgggttttttggactttgtgaaaaattggatcac
taaatctttttgattttttgcatgaaagtagggtaccatcataggtaaaa
gatggctcaagcagatttttgcaaaaaaatttatttcgcttaaaaaacgc
atgtttatctataagaatcactattaataagcatacatcaatgttcttag
tcaaattactcaatttctttatgagatagaagttttttttgctgatgagg
gcttacttttgaagaatatgtgtgtttcgacatgaaattttggttgcttg
gcgtgtttttatagaaaaactggccaaaatcGATATTTTGCGACCTTAGA
ATAAAAGGGTTCTATcgcaaaatttcaactttttgagttttatgcaTAAA
TGAAATCTTGAGGGCATAGAGAAACATTTTGTCAACTC Run BLAST on NCBI protein sequence of TCONS_00009554-protein >TCONS_00009554-protein ID=TCONS_00009554-protein|Name=TCONS_00009554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp
MGQKKKNNNKAAKKPAGPVTYEVTVGTPSNTGRDKDRKLRDEAEKEAQQA
MQVAFIQQMNETQRSYKTDDGDQSQVTGDDAIKLKWKWASGLDWNPSNML
LSTWLRVLAAGDYDGMLAEIAKTPEGELKDLLERRETLYNFSALFHVIKG
ASTTLDETGRQYNAKTKFVDRSKQPKHLQCAAKLIELGANVNARDMLGAT
PLFFCVMRYRNPVTMKIGKILLDNGAEINATSRLGETALLQPVMMKRFDC
VDFLMKYGADPSIRDYEGGCPQDMSVMDSEIKEHLNPKEPSSSVLDKLVC
SLCDQFYSKSRCTACFLVRYCSKECQLVHWDKHKKACKENKKKFTQLPLI
VAGDKKDGLPSDNFIAKVELVLSEEEGNKMLVYEETKGLLGHVVSSEAVY
GVVETKLKSKGSDSKAYFQAVVDTKQNIKINFNDFVTLELEW Run BLAST on NCBI transcript from alignment at sc0000095:387206..389793 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009554 ID=TCONS_00009554|Name=TCONS_00009554|organism=Clytia hemisphaerica|type=transcript|length=2588bp|location=Sequence derived from alignment at sc0000095:387206..389793 (Clytia hemisphaerica)
GAGTTGACAAAATGTTTCTCTATGCCCTCAAGATTTCATTTAtgcataaa
actcaaaaagttgaaattttgcgATAGAACCCTTTTATTCTAAGGTCGCA
AAATATCgattttggccagtttttctataaaaacacgccaagcaaccaaa
atttcatgtcgaaacacacatattcttcaaaagtaagccctcatcagcaa
aaaaaacttctatctcataaagaaattgagtaatttgactaagaacattg
atgtatgcttattaatagtgattcttatagataaacatgcgttttttaag
cgaaataaatttttttgcaaaaatctgcttgagccatcttttacctatga
tggtaccctactttcatgcaaaaaatcaaaaagatttagtgatccaattt
ttcacaaagtccaaaaaacccgttttttagccgttttttggcccaaattt
ggccaaaaaatttttttttcgaaaatcgggctccgtcacattttggccac
caccgttttgcacctttgtaccaaaaatcaatctcgagaaaagctggtaa
cgaacggacggacggacagagatgaatttataggacctccaccccaccgg
ggtaggtccaaaaactatcAACCGTTTTTACTGAATGAAAGCTCTATTTC
ACCCGATGGGAAATACGATATAATTTTTCAATACATTCTAGGTATTTCAG
TAATGAAATCTAACGAAATCCCGCGTCATTTAATTTTTCCTTCGTCATTT
AATATCAGCTGGATAAAAGGTTCCACAGAGGTGTATTTTAGTTTTGGATA
TTAAgctttttcacatgcacgtaaaattttactttagaccttacggaaaa
tcgttcgtaaggctgtcttttgggaatttccccaacattagagtttttgt
tgattaagagggtcttacgtgacttttccttccgtttaaaactttttgaa
cgtaagcaaactctacataaggaaaaaaacttaaaacactacgtaaactt
agaaaacattaaaaaaactaaactaaaaaatgaacataaattaacattat
tttcatcaaaataaattaCCATTCAAGTTCAAGGGTgacaaaatcattaa
aattgattttaatgttttgtttAGTATCAACAACAGCTTGGAAATAAGCT
TTCGAGTCACTACCTTTAGACTTCAATTTCGTTTCAACAACACCATAAAC
TGCTTCTGAGGAGACCACATGTCCTAAGAGACCTTTAGTTTCCTCATAAA
CCAACATTTTATTTCCCTCTTCCTCGCTAAGGACAAGCTCAACCTTGGCA
ATGAAATTATCACTTGGTAGGCCATCCTTCTTATCTCCAGCAACAATAAG
AGGCAATTGAGTGAATTTCTTCTTATTCTccttacaagcttttttatgtT
TATCCCAATGCACCAACTGACATTCTTTGCTGCAATATCTCACCAAAAAA
CAAGCTGTGCAACGACTCTTAGAATAAAATTGATCACACAATGAACAAAC
CAACTTATCCAGCACCGACGAGGAGGGTTCCTTTGGATTTAAATGTTCCT
TAATTTCACTATCCATAACCGACATATCTTGAGGACACCCTCCCTCATAG
TCGCGAATCGATGGATCTGCACCATACTTCATTAGAAAATCAACACAGTC
GAACCTTTTCATCATTACAGGTTGGAGAAGTGCAGTCTCTCCAAGACGAC
TGGTAGCATTGATTTCAGCTCCGTTATCCAACAAGATTTTGCCAATCTTC
ATGGTGACTGGATTCCGATATCTCAtaacacaaaaaaacaaaggTGTGGC
ACCTAACATGTCCCTCGCATTGACATTGGCACCCAGCTCGATCAATTTTG
CAGCACATTGCAaatgttttggttgttttgatCGATCAACAAATTTCGTT
TTCGCATTATACTGGCGACCAGTCTCATCCAGAGTAGTCGAAGCTCCTTT
AATAACGTGAAacaaagctgaaaaattataCAGCGTTTCACGTCGCTCTA
ATAAATCTTTTAACTCTCCTTCAGGAGTCTTAGCAATCTCAGCCAACATC
CCATCATAGTCTCCAGCAGCTAAAACACGAAGCCATGTGGAGAGTAACAT
ATTGCTAGGATTCCAATCCAAACCACTAGCCCATTTCCATTTTAGCTTAA
TGGCGTCATCACCAGTCACTTGGCTTTGATCACCATCATCAGTCTTATAC
GACCGTTGAGTTTCATTCATTTGCTGAATAAAAGCAACTTGCATGGCCTG
TTGGGCTTCTTTCTCAGCTTCATCCCTCAACTTCCTATCTTTGTCTCGAC
CAGTATTAGATGGTGTACCCACTGTAACTTCATAAGTAACAGGTCCAGCT
GGCTTCTTGGCTGCTTTATTgttattcttctttttctgaCCCATTCCTTT
TTCTTAACAGGATGAtatttcaatttatattttttatttagtaatagctg
tataaaaagaaaaataattttattgcaACAATGTCAATTTCAAGAGCGTT
ATAATGTATAACTAAAGAGATCTAACATTAATTTAGATTGTTAATATTAT
ACAAAATAGTTTAGAAAAGCCAacagaaaagatttttc Coding sequence (CDS) from alignment at sc0000095:387206..389793 >TCONS_00009554 ID=TCONS_00009554|Name=TCONS_00009554|organism=Clytia hemisphaerica|type=CDS|length=1329bp|location=Sequence derived from alignment at sc0000095:387206..389793 (Clytia hemisphaerica)
ttaCCATTCAAGTTCAAGGGTgacaaaatcattaaaattgattttaatgt
tttgtttAGTATCAACAACAGCTTGGAAATAAGCTTTCGAGTCACTACCT
TTAGACTTCAATTTCGTTTCAACAACACCATAAACTGCTTCTGAGGAGAC
CACATGTCCTAAGAGACCTTTAGTTTCCTCATAAACCAACATTTTATTTC
CCTCTTCCTCGCTAAGGACAAGCTCAACCTTGGCAATGAAATTATCACTT
GGTAGGCCATCCTTCTTATCTCCAGCAACAATAAGAGGCAATTGAGTGAA
TTTCTTCTTATTCTccttacaagcttttttatgtTTATCCCAATGCACCA
ACTGACATTCTTTGCTGCAATATCTCACCAAAAAACAAGCTGTGCAACGA
CTCTTAGAATAAAATTGATCACACAATGAACAAACCAACTTATCCAGCAC
CGACGAGGAGGGTTCCTTTGGATTTAAATGTTCCTTAATTTCACTATCCA
TAACCGACATATCTTGAGGACACCCTCCCTCATAGTCGCGAATCGATGGA
TCTGCACCATACTTCATTAGAAAATCAACACAGTCGAACCTTTTCATCAT
TACAGGTTGGAGAAGTGCAGTCTCTCCAAGACGACTGGTAGCATTGATTT
CAGCTCCGTTATCCAACAAGATTTTGCCAATCTTCATGGTGACTGGATTC
CGATATCTCAtaacacaaaaaaacaaaggTGTGGCACCTAACATGTCCCT
CGCATTGACATTGGCACCCAGCTCGATCAATTTTGCAGCACATTGCAaat
gttttggttgttttgatCGATCAACAAATTTCGTTTTCGCATTATACTGG
CGACCAGTCTCATCCAGAGTAGTCGAAGCTCCTTTAATAACGTGAAacaa
agctgaaaaattataCAGCGTTTCACGTCGCTCTAATAAATCTTTTAACT
CTCCTTCAGGAGTCTTAGCAATCTCAGCCAACATCCCATCATAGTCTCCA
GCAGCTAAAACACGAAGCCATGTGGAGAGTAACATATTGCTAGGATTCCA
ATCCAAACCACTAGCCCATTTCCATTTTAGCTTAATGGCGTCATCACCAG
TCACTTGGCTTTGATCACCATCATCAGTCTTATACGACCGTTGAGTTTCA
TTCATTTGCTGAATAAAAGCAACTTGCATGGCCTGTTGGGCTTCTTTCTC
AGCTTCATCCCTCAACTTCCTATCTTTGTCTCGACCAGTATTAGATGGTG
TACCCACTGTAACTTCATAAGTAACAGGTCCAGCTGGCTTCTTGGCTGCT
TTATTgttattcttctttttctgaCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009554-exon-sc0000095-1491911889:387206..389793 | TCONS_00009554-exon-sc0000095-1491911889:387206..389793 | Clytia hemisphaerica | exon |
| TCONS_00009554-exon-sc0000095-1510915933:387206..389793 | TCONS_00009554-exon-sc0000095-1510915933:387206..389793 | Clytia hemisphaerica | exon |
| TCONS_00009554-exon-sc0000095-1575043694:387206..389793 | TCONS_00009554-exon-sc0000095-1575043694:387206..389793 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095 | supercontig | sc0000095:387206..389793 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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