TCONS_00009569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009569
Unique NameTCONS_00009569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009569 ID=TCONS_00009569|Name=TCONS_00009569|organism=Clytia hemisphaerica|type=transcript|length=3457bp
CGGAGAGATTTTATTCGATTTACAAGGAGAATTACAGTAGTGTAGCCAAG
atgggcgcaaaatttgtgtaggagagcagatttttatgacactgtaatta
tctattaaTACCATGAATAGGTAATTACTATGTCATGAAAATCTACctgc
acaaattttgcgcccctcttggctacgtTACTGTGAATTGAATACTCATC
GAATAGAACGCCATCGAAGAAAGTAGAGTTTAGAGAGCGTTAACTGTACC
CAGGGACATGCTACAATAAATCCCGGTTTATTCCCGGTTTAGagtttttc
attactttttgacATATAAAGAGATTCGTATTGTTAGTTCTGTTTCAAAA
AATTGTGTGAGCAAACCAATGTAGTGGTTATCGAAAAGAAAACAGAAACT
AGAAACATAATCGATGGACAACCATCATATTATCTCTAATTTACTTTGAT
AAAAGtctgtaaaaaaaagtttaaagccAATATTAGAAGAAAATAACGTC
ATGCAGTCCTGCATATTGTTTGCGTTTCTTGTGGGCGTGGTGTGTGGGGC
GCCACCAAAATTTCCCATTGGTTCTGAGCCTGGATTGTGGGAAGGAGACA
TAAAgctgaatgaaaaacaaaagaaagatgtCGACAGAATCCTAGAAAAG
AAAGGCACCTCAACATTCGGTTTGACAAACGTATATCCACCATGGACAAA
TGGTGTGGTTGTGTATGAATTCGCTCCCAGCATTGCTAATAACCCAGCTA
AAAACCGTGGAATTTACGCAGCCATGAGAGAGTGGACAACCAAAACATCC
AACTGTATCACCTTCAGAAAACGAAGACCAAATGAAAAGAATTATCTCCA
ATTCTTCGTTGGCAACGGTTGCTGGGGACATTTAGGTATGCCCAACGGTA
GAAGTCAAATCTCTGTGGGAGCAGGCTGTGAAGGGCAAAATGTGATGGCT
CATGAAATTGGGCATGCACTTGGATTCTGGCACGAACAATCCAGAACGGA
TCGAGATTCCTATCTTCGAATTCTTTGGGAAAACGTTCCAAATGCTTTTC
GTGAAGCCTTCGAAAAATATGGAAGAGATCAAATTGATTCACTAGGAGTA
CCATATGATTATACATCAATCATGCATTACCCGTGGAACGCATTTTCTAC
CACTGGTCGTGATACGGTACGACCTTTGAGGAAAGTTCCATCTCCAGGAC
CTTATGTTCACGTTAGCGCCCTGGATGTCAAACAAGCAAGGCTGTTCTAC
AAGTGCGACGCTAAACCACCAGTTACCAGGCAACCACCTGTTACCAGGCA
ACCACCTGTTACAAAATGCATCACTGAGACGAGAGAAGTGTCGGTTAATG
CCAGAGATCCAAGTTGTTTCGATCGGAGCACCAGTTGCGCGAGCTGGGCC
AGCCGCGGTGAATGTAGACGAAACCCTGGATACATGAGACCAAATTGTAA
AAAATCATGTAATCTGTGTGGCTCGTCTTCATGTGTGGACAACAGTGGAA
ATTGTGCATATTGGGCTAGAAGTGGTCAATGCCAAGCCAATCCTGGATAC
ATGAACGTCAACTGTAGAAAATCCTGCAAATTATGTACTAAGGTGGTGAC
AAGTAAACGTTGTTACACCCTTCCACCACAAACCACCACCTCTGAACCCC
TCACACCACCCATCCCTTCAACTACCCAAGGTCCACCACCTATCCCAACC
ACTGGCCCAGTGGTGCCACCTATCCCGACGACGAATGGTCCAGTACCACC
GACCACTGTTGATCCGGGAACTCCTGAACCTCCACCCACACCGGATGATT
GCAAAGCGAAAGAAAATTATGGATTGACAGGTCAAATGTTGAGTGCTTCA
TCTAGCGACAGTAAATGGTCAGAAGCAAAGTTTGGTGTGTTTGACACAAA
ATCGGACGATCAAAGCGTTGGTGCGTGGTGTGCTGCTTATAACACTGACG
ACCAGTATTTGCAAATTGAAATAACTGCTGGTACTCTTGTGGCAGGTTTG
AAAATTCAAGGACGTGCTACAAGTGAAACAGATCCAAAATTCCATAAATT
CATCACACAGTTCGAGATTAAATGGAAGAAAGACGAcaattctgattggt
tgattgttGATCACTTgttcaaaacaaatatttcagatGCAAACAAAGGC
GAGGAGATCGAGTTCGAGGTTCCAATCAAAGCCAGGTATTTGAGGATTTA
CCCGAAAAGTTGGCAACACCAGATGTGCATGAGGGTAGATCTCATCAAAT
GTAAAATCTGAGCTAAACAGATTTTTTATTGTAAATGTATAATGACGTAG
TCAAAATGGTTGAgaaatcccagctggcacacaacgttgtttcgacgtta
tctaacgttcacaacgtccatataacattGGATAAGGCCATCATGATTGT
GATTTATGATTTTAAAACGATTGTAAGAATTAATGAAATGTATATTGATT
TTCTACAAAACACATATAGGCATGTTGTTTTGCACACTCCCCTCtgacag
acccactgggaaccctttccACACTGGAAATATAGGCCAAAATATTGTca
ccggtggaaaattatccttcaatttttgtccccactgaaaataatcaaat
aaaccaatcctcactgcaaaatattttgctatttttcccattgcCACTGA
ATTTGCTGAcaaataacaaaacaaaagaatttaaatactcggtaataaaa
aataatagaataccaattcccatcgagtttcagaaagttatttttacccc
cactggctgaaagaatcctaccgggtctatgagaagggggtgtttttgcA
TTCTATTGAACTTCGAATTAGAAAGTTAGACGATATCTTGCTCGCAAGTG
GTTATCTTTTAGatagatttttttgaaacaatttgcAACTCAGGAGTTAA
GACAAAAGTGCAAATCtcgaaagttgttttttttaactaaGAATCTGGAT
ATTTAGCTGGACTTTCGAGCCTGGTCCCTTTTCGACCCTTCTAACTAAGA
AAAAAGGACGAATGTGTGCTAACTATGTATGTCTTTTTGGACACTAGACC
CTTTTGCCTTGATAGCAACGATTTTCAGCCCTAGTCTAACCAGATTTCTG
CTAAGTATTATTTATAGTTATATTAGGTGACTAACGGAATAGCTATAAAG
CACAGTCTTACTAGACTGAACAGGAAAGGACTTTTTGCCCTTCCTTGTCC
TATACTAGATGATGTTGCAAACGATATCATCGTATGTCAAACAAGATTTT
TCGAGTACTATTTCATGTACTCGGAAAATGTTTGGCTTACGATAATATCG
ATAGAACGTTTGCAACATCATCTAGTAGGTATGATGATTAAGTATTTTTC
AAGGTCAGCAGATTCAATTTTTGATGCAGACTTAATTAATTATTTAACTG
TCAATCTATTTAATGAACCTTTTGAAAAAGGAATACTCCGAGACAATTAT
CGTAATG
Run BLAST on NCBI

protein sequence of TCONS_00009569-protein

>TCONS_00009569-protein ID=TCONS_00009569-protein|Name=TCONS_00009569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp
MQSCILFAFLVGVVCGAPPKFPIGSEPGLWEGDIKLNEKQKKDVDRILEK
KGTSTFGLTNVYPPWTNGVVVYEFAPSIANNPAKNRGIYAAMREWTTKTS
NCITFRKRRPNEKNYLQFFVGNGCWGHLGMPNGRSQISVGAGCEGQNVMA
HEIGHALGFWHEQSRTDRDSYLRILWENVPNAFREAFEKYGRDQIDSLGV
PYDYTSIMHYPWNAFSTTGRDTVRPLRKVPSPGPYVHVSALDVKQARLFY
KCDAKPPVTRQPPVTRQPPVTKCITETREVSVNARDPSCFDRSTSCASWA
SRGECRRNPGYMRPNCKKSCNLCGSSSCVDNSGNCAYWARSGQCQANPGY
MNVNCRKSCKLCTKVVTSKRCYTLPPQTTTSEPLTPPIPSTTQGPPPIPT
TGPVVPPIPTTNGPVPPTTVDPGTPEPPPTPDDCKAKENYGLTGQMLSAS
SSDSKWSEAKFGVFDTKSDDQSVGAWCAAYNTDDQYLQIEITAGTLVAGL
KIQGRATSETDPKFHKFITQFEIKWKKDDNSDWLIVDHLFKTNISDANKG
EEIEFEVPIKARYLRIYPKSWQHQMCMRVDLIKCKI
Run BLAST on NCBI

transcript from alignment at sc0000097:179584..188306+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009569 ID=TCONS_00009569|Name=TCONS_00009569|organism=Clytia hemisphaerica|type=transcript|length=8723bp|location=Sequence derived from alignment at sc0000097:179584..188306+ (Clytia hemisphaerica)
CGGAGAGATTTTATTCGATTTACAAGGAGAATTACAGTAGTGTAGCCAAG
atgggcgcaaaatttgtgtaggagagcagatttttatgacactgtaatta
tctattaaTACCATGAATAGGTAATTACTATGTCATGAAAATCTACctgc
acaaattttgcgcccctcttggctacgtTACTGTGAATTGAATACTCATC
GAATAGAACGCCATCGAAGAAAGTAGAGTTTAGAGAGCGTTAACTGTACC
CAGGGACATGCTACAATAAATCCCGGTTTATTCCCGGTTTAGagtttttc
attactttttgacATATAAAGAGATTCGTATTGTTAGTTCTGTTTCAAAA
AATTGTGTGAGCAAACCAATGTAGTGGTTATCGAAAAGAAAACAGAAACT
AGAAACATAATCGATGGACAACCATCATATTATCTCTAATTTACTTTGAT
AAAAGtctgtaaaaaaaagtttaaagccAATATTAGAAGAAAATAACGTC
ATGCAGTCCTGCATATTGTTTGCGTTTCTTGTGGGCGTGGTGTGTGGGGC
GCCACCAAAATTTCCCATTGGTTCTGAGCCTGGATTGTGGGAAGGAGACA
TAAAgctgaatgaaaaacaaaagaaagatgtCGACAGAATCCTAGAAAAG
AAAGGTAGGTATAAAAAGTATTGTGGTGGCTTGCCAAAATTTGGGACAAC
TTTAAGACCCCCTACtcgcagacccactgggaccccttcccactggaaaa
attggccaaaataccgTCCCCGGTTGAAATTGGTTCATCCTCCATTTTTt
ctccccactgaaaataatcaaataaaccaatcctcactgcaaaataattT
ACTACTTTTCCCATCCCCattaaattttctgacttgaaaacaaaagaaat
gaagtccccagccataaaaatacTGAGAttgagaatatcaatccccattg
agcttttttctgtttttttatcCCAACTGGCTGATAAaaccctaccgggt
ctgtgagaagggggtatgtACTTTAGAGgaaactgttttaaatttggatt
tttgaacTCCCTTTAAATAAGCGTGGTTTCGTCACTTGACACTTGAcccc
aaaatatttttgtgctGTTAGTATTGGATTTTCTCAACCGCGGGGGACAA
ATATGAACAgaacagaaaaataaagaaacaaattAGAAGTTGAACGCATA
TTGGCATTACCCTCCCTcgatacacgggttgcaaaattatatcaatgcag
tcaaaatgtgtgattactcgaaaaagttcacgtgatttcatccccatgtt
acttgctttagcAGGAAGCACATAAagatttcgagtaaaagcgtgatatG
CCTtttagactttaattttgcaaccggtGTATTCACCGCTTTAGATTTCC
AAGCGACCGTAGCGCaaatagcctatactagacgtcaacCACGCTTTTTC
TACGCAATCTTcctaccttcaggtagataTCTATCATAAGAGTAGTATCT
GACTGAGGTGGCCTGGTACTACCCAAAGACTGCAGATTCTGTTTTTGCAT
AAcaagaaaaaacttttaatttatatttttctcctCTGGATGGGCTCAAT
GGGGCTCAATCGGTTTAAATTTAGCTCTAGGAGGGGTGCGTTAAAAAGGG
CAATTTTATTTGTGAAAATCGCTCTCTTCCAGGGTCAATTCTTTAGCTTT
GGCTCGGGCATACGTACTATCCCTAATTGCTCGAAAagcagaaagatttg
aattaagGAAAGTATTTCACGAGGGTCTCCCCTTGACTGAGACTAAGAAT
TAATTTTAATAATAGAAAAACTCGAATAAACAAAGTTTGAATTGGCGAGA
GTCCACTTAACCTGTCACTTCGCCAAGTCAATGAGAATTGCTATTCAATC
TAAGTTCTCTTTTTCCAGGCACCTCAACATTCGGTTTGACAAACGTATAT
CCACCATGGACAAATGGTGTGGTTGTGTATGAATTCGCTCCCAGCATTGC
TAATAAGTAAGTAATATAATTTTGTCGATACCGAATCAATCTTATTGCAC
CTAACAAATGCAGAAATATTTAATGGTACTGTGTCCTCTCAAAACATACC
AGAAAGCGGTCTTTCGGTAATTTGAAATCTGTTTATGAGTCCATGTAAAC
TGGAGGTCcaaatattttaaggcttaagACCCAAACATAAATGAAACCTT
CAAAATCTTATGTTATTTCAAAGAAAAGCAGTGTTATTAATAATActgtt
tttcttcctttttcttaaATTAGCCCAGCTAAAAACCGTGGAATTTACGC
AGCCATGAGAGAGTGGACAACCAAAACATCCAACTGTATCACCTTCAGAA
AACGAAGACCAAATGAAAAGAATTATCTCCAATTCTTCGTTGGCAACGGT
TGCTGGGGACATTTAGGTATGCCCAACGGTAGAAGTCAAATCTCTGTGGG
AGCAGGCTGTGAAGGGCAAAATGTGATGGCTCATGAAATTGGGCATGCAC
TTGGATTCTGGTATGTTAAATGTtgtaaaaatttcgatttctgTTTTTTA
CAGTGGAGTTTTTTTAAAATGGAACGTCTATAACCCGAATGTCTCCTTAC
TCGAATTATGAAGACTGAActgaaaacaaaatcaaatccaCTGAAATTTG
TTATTTTCAAATGTCTGTAGCATTATATCCGTTATACAAGCCAGTTTAAA
TTTGTCAATGTTTTTCCTCGACAGAGACGGTCAGTTTGCAATTTTGATTG
TCTTCGATTTTACATGTCAGAAATGTTAAAGTCGTTCCAAATCGTTTCAG
CTACTTCGCTGTCCTCGAAAGTGAAGATGTATAAATTTTCTACTGCATTA
GACATGGATGATCGCTGCCAATGCCCCAAGAAAAACCACATGCAAAAAGT
TATCTATATGTATTTCTTAACCTTGAAATAAATCTCCCCTAAaaagattt
ctagaaaattaccTTAGGGAGTCATTTGCCATTCATATATATATTCTTCA
TTCCTTCTAAAGATCTTCTTTCAATCCATCTTTCAGGCACGAACAATCCA
GAACGGATCGAGATTCCTATCTTCGAATTCTTTGGGAAAACGTTCCAAAT
GCTTTTCGTGAAGCCTTCGAAAAATATGGAAGAGATCAAATTGATTCACT
AGGTGAAATAACATCACtaaatttttacatttgttTATTTCAAAGAGGCT
TCCAAAAACCTGATGTTATTCGGCGAAATAATGACCAGTGTCCGGTATTG
AAAGGCCGAATTTCCGGTAATCCAGTTCCGGTATGCTGGTATTTTATCGA
AAAAAGGAAGGGCACCCCAGCTTCAAAGGCCAGTCTTGAAGTATTATATT
TTGAATGTCTAAAAGCTAAACCGTGTCTTGGAATGAGACAGCAAAAGAAT
TCCCATCTGTCATTTGTCTCTATGTCATTTTTATTGGGCTTTTTGAATCC
AAAAtttgaataacttcgaatttcATAGCTTCAATATTTCAGTAAATCAA
TATGAGTGACAAAtctcataaattattttgagtgcaacgactgcctcgtt
ttgaaaccattactaAGGTGAACAAATCCCTTGAGGCGTCAAGTGTTACT
TTTTGAATAaagtaaatttcttttcaaatcatctgggaatcaattaccat
agcaatagtTCGAAAACGAGGTAAGCATTGCTCATgacgtaattcatgaa
aaagtcAATCCTCCCGatattttcaactttatttCATACGTTGTAGGAGT
ACCATATGATTATACATCAATCATGCATTACCCGTGGAACGCATTTTCTA
CCACTGGTCGTGATACGGTAAGTACTTTTACTTAATTTCAAGGGAATGAT
GGGagcgtagtggtatagtggttgaCTCTTGCCTGGAAAGCCCGAGTTCG
ATACCAACCGTTTCTCTATGATTCACTTGAcaagtgaatataccttcgTC
CAGATCAACCCATGCCAGTGAGGGGAATTaggtaccattactctgataca
agagtgtgggtagattagacagacattgtgacgtgTCGTGGCACTCATAA
GGCTCGGCCTcgcgtgagcatcgctctcccagtgtcgtacgttcgagtgt
catggtatacgccatggcttggcagtTCGCATCTGTCAAGTCGCAGTGac
tgtcagcgccgtgattcctactccttcgtgggtaggacctATCCCGAGTT
CATTTCGGAGAGTTCTTATCTATTTATcacgggagcgtatcgaatatgAG
AGTATGAGTATTTGTGAATGTTTCTTGTTCGAATTTGCAACTtttaatat
tatcgaataattgaGCATGTCGACTATTAGAACGTCAAATTAGAAAGCGT
CGGCTGTTACATACGGTAGTTTATTTAACGGTATTATCCGAAAACAACCG
TGTGTATGcagacaaaaatttttcaaaaaaaaccttCCCGCCTTAAGAGC
CGAATGAACTCAAAAAGAATGAATCAAGTTCAATTAGATTTGCAAACGTA
TtttgaaatgacaatttttcactttcaagGTACGACCTTTGAGGAAAGTT
CCATCTCCAGGACCTTATGTTCACGTTAGCGCCCTGGATGTCAAACAAGC
AAGGCTGTTCTACAAGTGCGACGCTAAACCACCAGTTACCAGGCAACCAC
CTGTTACCAGGCAACCACCTGTTACAAAATGCATCACTGAGACGAGAGAA
GTGTCGGTTAATGCCAGAGATCCAAGTTGTTTCGATCGGAGCACCAGTTG
CGCGAGCTGGGCCAGCCGCGGTGAATGTAGACGAAACCCTGGATACATGA
GACCAAATTGTAAAAAATCATGTAATCTGTGTGGCTCGTCTTGTAAGTAG
AATATTGTTTTTTACTTTCCACTCTACATCCATTTCGAGGCTCAActttt
cagagaaaaatttcatttaatttaaaTAGAAAGTATCCATGAATGATCTA
TCGACGTGATCATTTGGGGATTCTTATTAGATCTCATACGGATATTCTTA
CTCCTTCCCAGTAGGTggttttgtttgactggacaaaAACATTTGCTTAA
ACCTGTAAAAATAGTATTCatacgaaaaattattttcaagagAGTATAGA
ATAACTTGTCAGTTAATTTTTTTCGCAGCATGTGTGGACAACAGTGGAAA
TTGTGCATATTGGGCTAGAAGTGGTCAATGCCAAGCCAATCCTGGATACA
TGAACGTCAACTGTAGAAAATCCTGCAAATTATGTACTAAGGTAGGTCTA
CAATCAAGAATAAAAATGGTGAGACAGATAGGACAGAGGCAAATTAGAAG
CTGTCTCCTCCCTTTCCCCCAATGGCAATGTTCAATGAACGATGAGACAG
TCGTACAAAATGAACATTGCCCTTGGTGGAGGAGAGGGGGACCTTTATCA
GTAATTTCAAGTGGTTTTGTCCTTGATTGCTTTATTTTCCAACAATTTGC
TGGTTAAAACATGGTTCCAAAACCTTTTcccaaaagtcaaaaactaattt
ttttctgtgtttaGGTGGTGACAAGTAAACGTTGTTACACCCTTCCACCA
CAAACCACCACCTCTGAACCCCTCACACCACCCATCCCTTCAACTACCCA
AGGTCCACCACCTATCCCAACCACTGGCCCAGTGGTGCCACCTATCCCGA
CGACGAATGGTCCAGTACCACCGACCACTGTTGATCCGGGAACTCCTGAA
CCTCCACCCACACCGGATGATTGCAAAGCGAAAGAAAATTATGGATTGAC
AGGTAGGgtgatttttcgattttgtgaTTTCAACATCTGTCTGTATCgat
caaaatattaagagcaagAAAAATTGTAATACTGATCAAAACATTTAGGA
GAATCCAGTATTCTGCTGATTGACAAGAGTATTCGGCAAATAAAGATTGG
GATATATACACAAGGACAAGGTTTTATAACACGGTCTTGCGattattgtt
ttgataatgCAATGTTAAGCGCTTTCAGGATGATCTGTCTGAGCAAGAAA
CTTGAATAAAAGTTTTATTAAAGTTCCGTGGTCTCAGAAGGGAGAAGAAG
TTTTGAGTAATTATAAGGATCAATGGATCTTCTTTAATTATAatggaatt
tttaaaagattaaatATCTTCTCATTTAACGTGTACTAATATAATAGCTT
TATTTTACCCTCTACAGGTCAAATGTTGAGTGCTTCATCTAGCGACAGTA
AATGGTCAGAAGCAAAGTTTGGTGTGTTTGACACAAAATCGGACGATCAA
AGCGTTGGTGCGTGGTGTGCTGCTTATAACACTGACGACCAGTATTTGCA
AATTGAAATAACTGCTGGTACTCTTGTGGCAGGTAAGGTCATTTTCAACG
ATTCTTTTTCTAATAACCCCCTGATATCCTTGTGTCNCAAGAGTATTCAG
CAAATAAAGATTGGGATATATACACAAGGACAAGGTTTTATAACACGGTC
TTGCGattattgttttgataatgCAATGTTAAGCGCTTTCAGGATGTTCT
GTCTGAGCAAGAAACTTGAATAAAAGTTTTATTAAAGTTCCGTGGTCTCA
GAAGGGAGAAGAAGTTTTGAGTAATTATAAGGATCAATGGATCTTCTTTA
ATTATAatggaatttttaaaagattaaatATCTTCTCATTTAACGTGTAC
TAATATAATAGCTTTATTTTACCCTCTACAGGTCAAATGTTGAGTGCTTC
ATCTAGCGACAGTAAATGGTCAGAAGCAAAGTTTGGTGTGTTTGACACAA
AATCGGACGATCAAAGCGTTGGTGCGTGGTGTGCTGCTTATAACACTGAC
GACCAGTATTTGCAAATTGAAATAACTGATGGTACTCTTGTGGCAGGTAA
GGTCATTtccccagtgggaaaataccttagaatttcagccccactggaaa
attgactttgatttcatccccacttgaAATTCCATGTTTGAAAATTGCAC
TCCGAAACCTggtttttttaaccttggaacaatagaatttctatccccat
aaggattttgatagaaatttctatccccactgaggaaagaATCCCATCGG
GGATGTGAGACAGGAGTGGCTATAGTGCCATAGGACAATTCTTTCAGAGC
TTATTGACATTTTGTTGAGAAGCATTTTCTTTGCATCGTTGTTGGTTCTG
ACCAAATTTCTTTGCTGGGAAATGAAGCTTCCTGATCCAAAAGAtggttt
taaatttcttatatttgataatttttctaaatacttaaaaaagaaatctt
tatttttccagGTTTGAAAATTCAAGGACGTGCTACAAGTGAAACAGATC
CAAAATTCCATAAATTCATCACACAGTTCGAGATTAAATGGAAGAAAGAC
GAcaattctgattggttgattgttGATCACTTgttcaaaacaaatatttc
agatGCAAACAAAGGCGAGGAGATCGAGTTCGAGGTTCCAATCAAAGCCA
GGTATTTGAGGATTTACCCGAAAAGTTGGCAACACCAGATGTGCATGAGG
GTAGATCTCATCAAATGTAAAATCTGAGCTAAACAGATTTTTTATTGTAA
ATGTATAATGACGTAGTCAAAATGGTTGAgaaatcccagctggcacacaa
cgttgtttcgacgttatctaacgttcacaacgtccatataacattGGATA
AGGCCATCATGATTGTGATTTATGATTTTAAAACGATTGTAAGAATTAAT
GAAATGTATATTGATTTTCTACAAAACACATATAGGCATGTTGTTTTGCA
CACTCCCCTCtgacagacccactgggaaccctttccACACTGGAAATATA
GGCCAAAATATTGTcaccggtggaaaattatccttcaatttttgtcccca
ctgaaaataatcaaataaaccaatcctcactgcaaaatattttgctattt
ttcccattgcCACTGAATTTGCTGAcaaataacaaaacaaaagaatttaa
atactcggtaataaaaaataatagaataccaattcccatcgagtttcaga
aagttatttttacccccactggctgaaagaatcctaccgggtctatgaga
agggggtgtttttgcATTCTATTGAACTTCGAATTAGAAAGTTAGACGAT
ATCTTGCTCGCAAGTGGTTATCTTTTAGatagatttttttgaaacaattt
gcAACTCAGGAGTTAAGACAAAAGTGCAAATCtcgaaagttgtttttttt
aactaaGAATCTGGATATTTAGCTGGACTTTCGAGCCTGGTCCCTTTTCG
ACCCTTCTAACTAAGAAAAAAGGACGAATGTGTGCTAACTATGTATGTCT
TTTTGGACACTAGACCCTTTTGCCTTGATAGCAACGATTTTCAGCCCTAG
TCTAACCAGATTTCTGCTAAGTATTATTTATAGTTATATTAGGTGACTAA
CGGAATAGCTATAAAGCACAGTCTTACTAGACTGAACAGGAAAGGACTTT
TTGCCCTTCCTTGTCCTATACTAGATGATGTTGCAAACGATATCATCGTA
TGTCAAACAAGATTTTTCGAGTACTATTTCATGTACTCGGAAAATGTTTG
GCTTACGATAATATCGATAGAACGTTTGCAACATCATCTAGTAGGTATGA
TGATTAAGTATTTTTCAAGGTCAGCAGATTCAATTTTTGATGCAGACTTA
ATTAATTATTTAACTGTCAATCTATTTAATGAACCTTTTGAAAAAGGAAT
ACTCCGAGACAATTATCGTAATG

Coding sequence (CDS) from alignment at sc0000097:179584..188306+

>TCONS_00009569 ID=TCONS_00009569|Name=TCONS_00009569|organism=Clytia hemisphaerica|type=CDS|length=1761bp|location=Sequence derived from alignment at sc0000097:179584..188306+ (Clytia hemisphaerica)
ATGCAGTCCTGCATATTGTTTGCGTTTCTTGTGGGCGTGGTGTGTGGGGC
GCCACCAAAATTTCCCATTGGTTCTGAGCCTGGATTGTGGGAAGGAGACA
TAAAgctgaatgaaaaacaaaagaaagatgtCGACAGAATCCTAGAAAAG
AAAGGCACCTCAACATTCGGTTTGACAAACGTATATCCACCATGGACAAA
TGGTGTGGTTGTGTATGAATTCGCTCCCAGCATTGCTAATAACCCAGCTA
AAAACCGTGGAATTTACGCAGCCATGAGAGAGTGGACAACCAAAACATCC
AACTGTATCACCTTCAGAAAACGAAGACCAAATGAAAAGAATTATCTCCA
ATTCTTCGTTGGCAACGGTTGCTGGGGACATTTAGGTATGCCCAACGGTA
GAAGTCAAATCTCTGTGGGAGCAGGCTGTGAAGGGCAAAATGTGATGGCT
CATGAAATTGGGCATGCACTTGGATTCTGGCACGAACAATCCAGAACGGA
TCGAGATTCCTATCTTCGAATTCTTTGGGAAAACGTTCCAAATGCTTTTC
GTGAAGCCTTCGAAAAATATGGAAGAGATCAAATTGATTCACTAGGAGTA
CCATATGATTATACATCAATCATGCATTACCCGTGGAACGCATTTTCTAC
CACTGGTCGTGATACGGTACGACCTTTGAGGAAAGTTCCATCTCCAGGAC
CTTATGTTCACGTTAGCGCCCTGGATGTCAAACAAGCAAGGCTGTTCTAC
AAGTGCGACGCTAAACCACCAGTTACCAGGCAACCACCTGTTACCAGGCA
ACCACCTGTTACAAAATGCATCACTGAGACGAGAGAAGTGTCGGTTAATG
CCAGAGATCCAAGTTGTTTCGATCGGAGCACCAGTTGCGCGAGCTGGGCC
AGCCGCGGTGAATGTAGACGAAACCCTGGATACATGAGACCAAATTGTAA
AAAATCATGTAATCTGTGTGGCTCGTCTTCATGTGTGGACAACAGTGGAA
ATTGTGCATATTGGGCTAGAAGTGGTCAATGCCAAGCCAATCCTGGATAC
ATGAACGTCAACTGTAGAAAATCCTGCAAATTATGTACTAAGGTGGTGAC
AAGTAAACGTTGTTACACCCTTCCACCACAAACCACCACCTCTGAACCCC
TCACACCACCCATCCCTTCAACTACCCAAGGTCCACCACCTATCCCAACC
ACTGGCCCAGTGGTGCCACCTATCCCGACGACGAATGGTCCAGTACCACC
GACCACTGTTGATCCGGGAACTCCTGAACCTCCACCCACACCGGATGATT
GCAAAGCGAAAGAAAATTATGGATTGACAGGTCAAATGTTGAGTGCTTCA
TCTAGCGACAGTAAATGGTCAGAAGCAAAGTTTGGTGTGTTTGACACAAA
ATCGGACGATCAAAGCGTTGGTGCGTGGTGTGCTGCTTATAACACTGACG
ACCAGTATTTGCAAATTGAAATAACTGCTGGTACTCTTGTGGCAGGTTTG
AAAATTCAAGGACGTGCTACAAGTGAAACAGATCCAAAATTCCATAAATT
CATCACACAGTTCGAGATTAAATGGAAGAAAGACGAcaattctgattggt
tgattgttGATCACTTgttcaaaacaaatatttcagatGCAAACAAAGGC
GAGGAGATCGAGTTCGAGGTTCCAATCAAAGCCAGGTATTTGAGGATTTA
CCCGAAAAGTTGGCAACACCAGATGTGCATGAGGGTAGATCTCATCAAAT
GTAAAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005350XLOC_005350Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009569-proteinTCONS_00009569-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009569-exon-sc0000097-1491911889:179584..180237TCONS_00009569-exon-sc0000097-1491911889:179584..180237Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1510915933:179584..180237TCONS_00009569-exon-sc0000097-1510915933:179584..180237Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1575043694:179584..180237TCONS_00009569-exon-sc0000097-1575043694:179584..180237Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1491911889:181502..181589TCONS_00009569-exon-sc0000097-1491911889:181502..181589Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1510915933:181502..181589TCONS_00009569-exon-sc0000097-1510915933:181502..181589Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1575043694:181502..181589TCONS_00009569-exon-sc0000097-1575043694:181502..181589Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1491911889:181857..182093TCONS_00009569-exon-sc0000097-1491911889:181857..182093Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1510915933:181857..182093TCONS_00009569-exon-sc0000097-1510915933:181857..182093Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1575043694:181857..182093TCONS_00009569-exon-sc0000097-1575043694:181857..182093Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1491911889:182620..182735TCONS_00009569-exon-sc0000097-1491911889:182620..182735Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1510915933:182620..182735TCONS_00009569-exon-sc0000097-1510915933:182620..182735Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1575043694:182620..182735TCONS_00009569-exon-sc0000097-1575043694:182620..182735Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1491911889:183330..183400TCONS_00009569-exon-sc0000097-1491911889:183330..183400Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1510915933:183330..183400TCONS_00009569-exon-sc0000097-1510915933:183330..183400Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1575043694:183330..183400TCONS_00009569-exon-sc0000097-1575043694:183330..183400Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1491911889:184113..184425TCONS_00009569-exon-sc0000097-1491911889:184113..184425Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1510915933:184113..184425TCONS_00009569-exon-sc0000097-1510915933:184113..184425Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1575043694:184113..184425TCONS_00009569-exon-sc0000097-1575043694:184113..184425Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1491911889:184712..184824TCONS_00009569-exon-sc0000097-1491911889:184712..184824Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1510915933:184712..184824TCONS_00009569-exon-sc0000097-1510915933:184712..184824Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1575043694:184712..184824TCONS_00009569-exon-sc0000097-1575043694:184712..184824Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1491911889:185098..185335TCONS_00009569-exon-sc0000097-1491911889:185098..185335Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1510915933:185098..185335TCONS_00009569-exon-sc0000097-1510915933:185098..185335Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1575043694:185098..185335TCONS_00009569-exon-sc0000097-1575043694:185098..185335Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1491911889:185751..185915TCONS_00009569-exon-sc0000097-1491911889:185751..185915Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1510915933:185751..185915TCONS_00009569-exon-sc0000097-1510915933:185751..185915Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1575043694:185751..185915TCONS_00009569-exon-sc0000097-1575043694:185751..185915Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1491911889:186845..188306TCONS_00009569-exon-sc0000097-1491911889:186845..188306Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1510915933:186845..188306TCONS_00009569-exon-sc0000097-1510915933:186845..188306Clytia hemisphaericaexon
TCONS_00009569-exon-sc0000097-1575043694:186845..188306TCONS_00009569-exon-sc0000097-1575043694:186845..188306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:179584..188306 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.131471	0	0	0.238783	9.79713	10.9424	73.76	83.3376	66.5527	68.7709	94.3095	78.4371	23.1929	15.2906	12.6264	20.6407	42.9247	60.4043	77.8911	115.639	79.6435	90.7424	77.3416	82.4649	27.662	22.407	9.31274	16.1632	294.632	339.1
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR003582ShKT_dom
IPR006026Peptidase_Metallo
IPR000421FA58C
IPR008979Galactose-bd-like
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00009569 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.466e-28
Identity = 82/229 (35.81%), Postives = 112/229 (48.91%), Query Frame = 3 
Query:  585 LWEGDIKLNEKQKKDVDRILEKKGTSTFGLTNVYPPWTNGVVVYEFAPSIANNPAKNRGIYAAMREWTTKTSNCITFRKRRPNEKNYLQFFVGNGCWGHLGMPN-GRSQISVGAGCEGQNVMAHEIGHALGFWHEQSRTDRDSYLRILWENVPNAFREAFEKYGRDQIDSLGVPYDYTSIMHYPWNAFSTTGRDTV--RPLRKVPSPGPYVHVSALDVKQARLFYKCDA 1262
            L+EGDI+L+  Q ++          S  G    +P      + Y    S+  N AK   I  A   +  KT  CI F K    E NY+  F G+GCW  +G    G+ ++S+GA C+    + HE  HALGFWHEQSR+DRD Y+RI+W+ + +     F  Y  D  DSL VPYDYTS+MHY   AF      T+  R        G  +  S  D+ +    Y C +
Sbjct:   48 LFEGDIRLDRAQIRN----------SIIGEKYRWPH----TIPYVLEDSLEMN-AKGV-ILNAFERYRLKT--CIDF-KPWAGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSS 257
The following BLAST results are available for this feature:
BLAST of TCONS_00009569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1B1.466e-2835.81Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=... [more]
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