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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009573 ID=TCONS_00009573|Name=TCONS_00009573|organism=Clytia hemisphaerica|type=transcript|length=642bp
AGGATGACGAGACAACTGCTATCACCTCCTCAAAAACTGCAATCCATCGG
TTCTCATGGGAAATGTTAGCTTTCAGATATTTTGGGAACTCTAATGCAGT
CATCATCGTATGTGAAGTTTTGatttgtaaaaatgaagattttgccGATT
TAAGCGGAGAATGCAAAAGATGTGGTCAGACttcaaaaagaaagagaaaa
gcTGTCAGTGATTCATTGATTCTTGAGAAAACAACAATCTCCAGTCAACC
TATTTTTATCATCAACCTTCCAGACAAGCCAGGACAATCACCAGCACAAA
AGAATGAAGGATTTTTGGGAAGACCAGAAGGAATTTCATTGATTGCTGTT
TTAGGAATAATCATTCTCGCCCTGAGTGCTTTCATTGTGAAGAAAAAGAT
GGTTGCTACCTCCTCACATTTGATGAAGAAAACTTTGCAAGTTGAaggaa
atgttgaaaaaggAGTTGACAACATGGCCATGGAAGTGATCAGAAACTGA
TCATGAATAACGGTTGAGAATTCATGTCTCATCGAAAAGTCCTCTTATTA
ATTAAGAAACGTATTAGCATTTAATCTACTGCACTTATATTTAGGTTTTT
AAAAGCTTGGAAACTATGTCTGTTACATTTGATAGGATTTCA Run BLAST on NCBI protein sequence of TCONS_00009573-protein >TCONS_00009573-protein ID=TCONS_00009573-protein|Name=TCONS_00009573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
DDETTAITSSKTAIHRFSWEMLAFRYFGNSNAVIIVCEVLICKNEDFADL
SGECKRCGQTSKRKRKAVSDSLILEKTTISSQPIFIINLPDKPGQSPAQK
NEGFLGRPEGISLIAVLGIIILALSAFIVKKKMVATSSHLMKKTLQVEGN
VEKGVDNMAMEVIRN Run BLAST on NCBI transcript from alignment at sc0000097:213010..213964+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009573 ID=TCONS_00009573|Name=TCONS_00009573|organism=Clytia hemisphaerica|type=transcript|length=955bp|location=Sequence derived from alignment at sc0000097:213010..213964+ (Clytia hemisphaerica)
AGGATGACGAGACAACTGCTATCACCTCCTCAAAAACTGCAATCCATCGG
TTCTCATGGGAAATGTTAGCTTTCAGATATTTTGGGAACTCTAATGCAGT
CATCATCGTATGTGAAGTTTTGatttgtaaaaatgaagattttgccGATT
TAAGCGGAGAATGCAAAAGATGTGGTCAGACttcaaaaagaaagagaaaa
gcTGTCAGTGATTCATTGATTCTTGAGAAAACAACAATCTCCAGTCAACC
TATTTTTATCATCAACCTTCCAGACAAGCCAGGTCAGAATTTTTGGTTTA
GGTCATTGTCATACTGAATGATATATCTCCCAATTTGGAGTCTAAGCTCT
GGAGCTTTCTAGTAAAAGAACTGTCTTCGACTATCAACCTGGCAACAGAA
TCTACTCCAGTTGCTTCCCGTAATGGTGTGATTCGGGGATTCTTTACGAT
TGATGAGCCCTTGATAAGTAAATATGAATGATGTAGATTTTCACTAATCG
CAAATCTTACACGAATTTCATGACTGGCTGATATTTACTAGATCCTTCTC
TTAGCAGCATAAAGGGGACGAAACTTTAAACTTTTCATATTTTAGGACAA
TCACCAGCACAAAAGAATGAAGGATTTTTGGGAAGACCAGAAGGAATTTC
ATTGATTGCTGTTTTAGGAATAATCATTCTCGCCCTGAGTGCTTTCATTG
TGAAGAAAAAGATGGTTGCTACCTCCTCACATTTGATGAAGAAAACTTTG
CAAGTTGAaggaaatgttgaaaaaggAGTTGACAACATGGCCATGGAAGT
GATCAGAAACTGATCATGAATAACGGTTGAGAATTCATGTCTCATCGAAA
AGTCCTCTTATTAATTAAGAAACGTATTAGCATTTAATCTACTGCACTTA
TATTTAGGTTTTTAAAAGCTTGGAAACTATGTCTGTTACATTTGATAGGA
TTTCA Coding sequence (CDS) from alignment at sc0000097:213010..213964+ >TCONS_00009573 ID=TCONS_00009573|Name=TCONS_00009573|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0000097:213010..213964+ (Clytia hemisphaerica)
GATGACGAGACAACTGCTATCACCTCCTCAAAAACTGCAATCCATCGGTT
CTCATGGGAAATGTTAGCTTTCAGATATTTTGGGAACTCTAATGCAGTCA
TCATCGTATGTGAAGTTTTGatttgtaaaaatgaagattttgccGATTTA
AGCGGAGAATGCAAAAGATGTGGTCAGACttcaaaaagaaagagaaaagc
TGTCAGTGATTCATTGATTCTTGAGAAAACAACAATCTCCAGTCAACCTA
TTTTTATCATCAACCTTCCAGACAAGCCAGGACAATCACCAGCACAAAAG
AATGAAGGATTTTTGGGAAGACCAGAAGGAATTTCATTGATTGCTGTTTT
AGGAATAATCATTCTCGCCCTGAGTGCTTTCATTGTGAAGAAAAAGATGG
TTGCTACCTCCTCACATTTGATGAAGAAAACTTTGCAAGTTGAaggaaat
gttgaaaaaggAGTTGACAACATGGCCATGGAAGTGATCAGAAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009573-exon-sc0000097-1491911889:213010..213291 | TCONS_00009573-exon-sc0000097-1491911889:213010..213291 | Clytia hemisphaerica | exon |
| TCONS_00009573-exon-sc0000097-1510915933:213010..213291 | TCONS_00009573-exon-sc0000097-1510915933:213010..213291 | Clytia hemisphaerica | exon |
| TCONS_00009573-exon-sc0000097-1575043694:213010..213291 | TCONS_00009573-exon-sc0000097-1575043694:213010..213291 | Clytia hemisphaerica | exon |
| TCONS_00009573-exon-sc0000097-1491911889:213605..213964 | TCONS_00009573-exon-sc0000097-1491911889:213605..213964 | Clytia hemisphaerica | exon |
| TCONS_00009573-exon-sc0000097-1510915933:213605..213964 | TCONS_00009573-exon-sc0000097-1510915933:213605..213964 | Clytia hemisphaerica | exon |
| TCONS_00009573-exon-sc0000097-1575043694:213605..213964 | TCONS_00009573-exon-sc0000097-1575043694:213605..213964 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:213010..213964 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001507 | ZP_dom |
Blast
The following BLAST results are available for this feature:
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