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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009588 ID=TCONS_00009588|Name=TCONS_00009588|organism=Clytia hemisphaerica|type=transcript|length=2516bp
GTAAATCTGATCCAAGTTTTGAAAGCGAAAGAGATAATCAATTTCTAATT
GTAAGATTGTTGTTGGTGATGTAGGTTGTAAAGAGGAATCATAATTATAT
CAAAAAAATGGACTGGACATTGTTCTCGAAGATTATTGGAGCAATCCTTt
tgtttgtgtttacctttttgtTCACAATATTACcttataaattgaaaaaa
atccgtcaaaacaaattgaaaagTATCTCATGTTTTTGTGGTGGGctttt
ccttgGCCTCAGTTTCCTACATCTAATACCCGAGACTCTCCATGGTATCC
ATGACAACGAATCCCTAATGAAAATACAGAAGGTGTATCCATTTGGTGAA
CTGGTTGTCATCTTGGGCATGATTCTGGTACTGGCCACTGAGAAGTTCGC
AGGAATGATCCAAATTAACCGCAAAACCACCAAAGTGAAATGTGATGCTA
GCGAGAATTGCTGCCAAGAAGAATGCACTATACAGGGGCTGGAGGATAGA
AAAACACCATTGTTCAAGAAATTGGAGAAGCCGTACGTCGAAAGAGAAGT
AACACCTTCGGAGTCTTCAAGCAGTGAACAAGGTGAAATTGAACAAGACA
CGAAAGAAAAGATCGAGGAAGAACACTTGTCATCAAACGAAAAAGATGTC
ATTTTCTCACATAATGGACAAAACGGTAACGGCCACAGAGTATCGCTCAC
TGCCAGCACCATAGAGAGTAAAAATGAGCTTCGTTTATTAAAAATTCGAA
CAATTTGTTTAGTGATAGCACTTATGGTTCATTCGCTATTCGAAGGTTTA
ACGGTTGGTCTTCATGACAACGCTTCGAATGTTTGGATTTTGTTAGCGTT
GTTAATGTTCCATAAATCGTTAGTTGGATTCTCATTGGGTATTGCTTTGG
TCAATGATAAAAGTGATCTGAGATCCTTCCAAAAGAAAGCTggtCTATTC
GCCATTGCTTCGCCGATCGGAGCTATCATTGGTGTCATCATTTTTAGTGC
CAAATCAAGTTTTATAGGTGACGAAGTGGTTATTATTCTCACAGGGCTTT
CCACTGGAACTTTTGTTTACGTGACCTTCTTTGAAATCCTTGGCAAATGC
CTGGAAGGAGATAAGATGGAAGACATGATTGGATTTGGTTGTTTTTTGTT
AGGCTTTGGTATGTTTGCTGGAATCACTGCAGTACCACAATTCCAACATT
AATGGTATGAatgctattcatgatatgcaccattgtaatTTCTTCAACGG
actcaacagctgattggttgtaattgacgtattaactgattttacgtcac
ttacaacccaatcagctgttgggaccatgatgtaatgtccagaagacatt
gcaatagtGCACCATCGATCCGGTGGCACTTAGACATTTCACGTCATTTT
AACACCTATCAAACTCAAACTCAGTCCCCCAAGGTATTTCACGGTTGAAA
TAATCTACgagtaatcaggactgattgagCTCTTATAACAACTTCCTATT
GGTCAGGAATTATCTtcgtaatctcatggttgatttaaattcgattgacg
tttatgcttacgttaatttgtaatttcccgcgaacttgtaatttccctcc
tagattttgtaatttcccgcaaaatgaaattttcatcgtttgcaaattca
tcacctttttcgactttcttactaactttaaaggcttaattaagtaaatg
gaatactatccaattaaaactcgattcgcgtttctatgacttttttgaga
cctctttaaattttcagattgatttccagtgttaaaattgacgtctttca
gaattgttagaatttcaatccaaaccatgagattaacctagaatcccatg
cttgttttcgtgaaattctggataaattaccctcggtcaaatttctcgtt
gcactcgggaaatttcaaaaaatttcaaaattgacctcgggaaatttatc
ccgaatttcccttataaccatgagattactagtacgaATGTTTGACCAAT
CCCTATGGTCATGCGACGTCTTATGGACATTCAATGGACGGCTTTAAGAC
CTTTGGATAtcctagaaacgtacattagacgtccaaaagGCATTTGTGTC
CATTGAGATAGGGTTATCCCATAACTCCTGATTACCGTAATTTCATTTCG
ACCGTAAAATGCAGCTATTGGCACGAGTTGAAAGGTTGATTTTCTGGAAT
GAGTTTTTGCAGTAGACTGAATTCCGATGGTtctaactataaaccctcga
atgtgacagagcccgattttcaaaaaaaaaaaatttggggcaaatttggg
ccaaaaaacggctaaaaacgggttttttgggctttgtgaaaaattaggtc
gttaattttttctgattttttgcatgaaagtagggtaccatcgtaggtaa
aagatggtttaagcagatttttgcaaaaatattttgttggctcaaaaaac
gcatgtttatctataagaatcactattaataagcatacatcaatgttctt
agtcaaattactcaat Run BLAST on NCBI transcript from alignment at sc0000097:404529..411078+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009588 ID=TCONS_00009588|Name=TCONS_00009588|organism=Clytia hemisphaerica|type=transcript|length=6550bp|location=Sequence derived from alignment at sc0000097:404529..411078+ (Clytia hemisphaerica)
GTAAATCTGATCCAAGTTTTGAAAGCGAAAGAGATAATCAATTTCTAATT
GTAAGATTGTTGTTGGTGATGTAGGTTGTAAAGAGGAATCATAATTATAT
CAAAAAAATGGACTGGACATTGTTCTCGAAGATTATTGGAGCAATCCTTt
tgtttgtgtttacctttttgtTCACAATATTACcttataaattgaaaaaa
atccgtcaaaacaaattgaaaagTATCTCATGTTTTTGTGGTGGGGTAAG
TGCCTTTTTaactctagtttagacggcccactttttgccctgcctattct
aactGTGAATTGGAGTTGGCAgaaagttggctgtctaaagtcaatgcatt
gccctcttttgacgtcaatgccatgtcttctttcaatctttttcaagcaa
agttTTTAACTGCCAATATAGTGCCTACtttttgcctactctaacaatta
gaataggcagggcagaaagtcggccgtttaaactagagcttaattttttt
actttgtacaacgaagtttttttaactcgaacttctttaactcaaacaag
ttttcCCGTCCCTTCAATTAACAATACTTTATAAagcttactccataact
cgagatTTTCTTAACTTAACAAATTTGTGTTACCTGTACGTGCtcaagtt
atggagactctgctttaatatttttgacaccTTTGTTACCTAGAGTTACC
GACGGACAGAATGTTCagatttttgaccatttttgcgTCCCCACAATACA
GCCTACAGCTGGTGATTTTCCGGGAAAATTCAGATTGTTAACACAAATTT
ggtagtacacgtttttttttataagaacaaactatataagaacataaggc
ttcgaggcccaaaaatctaagaacattctaagaacatactaaggctttgg
agacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcggg
gggggggggggcaggggGTCATGgccccccaatattttgcaaagtatttt
tttttactttaaaaaatcccGTTTAGAGGGATGAAATAAGtgtgaaaagt
cgaaaattttaattcatcgcccaaccatggtgagcgacatattttttggc
cccctcaattcaATTAGCACGCCGGGGACCATGCCAGAGTTAAATATTTA
TACTAAATCAAGTTTTATTCCTTCATCCaaattccagcttttccttgGCC
TCAGTTTCCTACATCTAATACCCGAGACTCTCCATGGTATCCATGACAAC
GAATCCCTAATGAAAATACAGAAGGTGTATCCATTTGGTGAACTGGTTGT
CATCTTGGGCATGATTCTGGTACTGGCCACTGAGAAGTTCGCAGGAATGA
TCCAAATTAACCGCAAAACCACCAAAGTGAAATGTGATGCTAGCGAGAAT
TGCTGCCAAGAAGAATGCACTATACAGGGGCTGGGTATGGGTATGCATAT
GTATTAGTTGTAGTATTAGGGTTAAGGGTGTGGTATAGTTCAAGATAATG
AGAGGTATCTAAAAGGGGTTGAAAGGTCAAGTCAAGGTCCGAGGACCTGG
GCGCCAATTGGGCTTAGTcacatttcttaaaaaaaaaagacatttttgga
catttttaaGTACCTTCAAATACACAACAGTAAGCTGCTTATGGCAACCa
gtgaatgggcttttccagaaataatctgtgcccccctgttgagggtatcg
gatatccagggggttaacgatttttgttcaaaagtggatattcagggggt
taaatatctacaaagggagcggatatccagggggtaaagtgtcttttcaa
gtaagaagtacgatatccaggggtaagcatatttttaagagtgaatatcc
agggggtctttactaataaagtaggatatccagggggttcgatacttcga
aaaatcaatatcctcaacagtgggggtaaaaaaattttctggaaaagacC
AATGATattcgggacaagctggagtttttacaagctcttatttgatttgg
ttggtcgttaagatgtaataaaataatcttattactttttctaaagaacg
cgtcatctctatcactttaaataaccaattagtgaagtatcttgtaaaaa
ctccagctcatccctgatATTCGGCCCCTTTTTCAGCATAACAATAAATC
TGCACACttgataccttatcggggaaaaaaatttgggggaaagtgacgaa
aatttcccgacattttatcacccgaccaaaacttgtaccacattttttta
tccccgaccaaaacatttacccgaaattttataccgcaaccaaaattcaa
atctaattttcttacacctttatttaccgaaattagtgctttaaaNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNgaaaccatttcttttggacagtttagtcgggtgaaag
tgacgaatttgaaatttttgttggggaaaagtgacgaatttgaaattttg
gtggggggaaagtgacgaaaatgcctctaggtgacgaaatttgttcccga
tgaaaaaaaaaaccgactaaataaaactccgacattttttttccCGATAA
GGTAATTCATTATTTTATCGTCATTCTTTTCCCACAGAGGATAGAAAAAC
ACCATTGTTCAAGAAATTGGAGAAGCCGTACGTCGAAAGAGAAGTAACAC
CTTCGGAGTCTTCAAGCAGTGAACAAGGTGAAATTGAACAAGACACGAAA
GAAAAGATCGAGGAAGAACACTTGTCATCAAACGAAAAAGATGTCATTTT
CTCACATAATGGACAAAACGGTAACGGCCACAGAGTATCGCTCACTGCCA
GCACCATAGAGAGTAAAAATGAGCTTCGTTTATTAAAAATTCGAACAATT
TGTTTAGTGATAGCACTTATGGTTCATTCGCTATTCGAAGGTTTAACGGT
TGGTCTTCATGACAACGCTTCGAATGTTTGGATTTTGTTAGCGTTGTTAA
TGTTCCATAAATCGTTAGTTGGATTCTCATTGGGTATTGCTTTGGTCAAT
GATAAAAGTGATCTGAGATCCTTCCAAAAGAAAGCTGTAAGTAcatgttt
ctttataagaaccaagTAAAATTTGGGTGAGGCTCGTCTGTtcttttttg
gtgattttaaaGACAGGTCTCCACTtgcgatcgcaccttttggcttcaat
cctttttgcttggaaaaaagattacgtcataaaaatgtagctaAATGTGa
ctacatttcaactttttttaaaccgttacgtcagatcgcaccaatggaat
tgtttcatttttcttttggccaacagcgtggaagctttgctcgaaaaagt
gcgatcgcagcgtgcgcaagtggagaccggccttaagactggaatgttct
caaaatgttcttgatATGCTTGCTTTACTCcctttttgattgaaaaaggg
GATTTAAAATTACCGAATGTTATTGCTCTTTCAAtgacaccacggctggt
tttaattaacccgaaatttctcaattcgtgttaattacaCGTCTCaatat
tcatgtaataaggtagcATTTTCCTAGTTAGCTCTGAAATCtgaaattct
tcatttttcagaatatatacaccttttcgaccgtagcctccaattgccgc
gcgggcatttttttgtctgttttaccaccctaaaaaccgtcccagtcttt
ttttcgcacctatagacaatagaaaaaggtgtaaaaaaaggtttggatcg
agtttaggggtgataattaaataataaagtggcaccgCCTGACCGCTCGA
TTACggccgaaaaggtgtattgaccCATATGAAAATATCCTTGATAGTTG
AtcgaatgtctttttttatttttagggtCTATTCGCCATTGCTTCGCCGA
TCGGAGCTATCATTGGTGTCATCATTTTTAGTGCCAAATCAAGTTTTATA
GGTGACGAAGTGGTTATTATTCTCACAGGGCTTTCCACTGGAACTTTTGT
TTACGTGACCTTCTTTGAAATCCTTGGCAAATGCCTGGAAGGAGATAAGA
TGGAAGACATGATTGGATTTGGTTGTTTTTTGTTAGGCTTTGGTATGTTT
GCTGGAATCACTGCAGTACCACAATTCCAACATTAATGGTATGAatgcta
ttcatgatatgcaccattgtaatTTCTTCAACGGactcaacagctgattg
gttgtaattgacgtattaactgattttacgtcacttacaacccaatcagc
tgttgggaccatgatgtaatgtccagaagacattgcaatagtGCACCATC
GATCCGGTGGCACTTAGACATTTCACGTCATTTTAACACCTATCAAACTC
AAACTCAGTCCCCCAAGGTATTTCACGGTTGAAATAATCTACgagtaatc
aggactgattgagCTCTTATAACAACTTCCTATTGGTCAGGAATTATCTt
cgtaatctcatggttgatttaaattcgattgacgtttatgcttacgttaa
tttgtaatttcccgcgaacttgtaatttccctcctagattttgtaatttc
ccgcaaaatgaaattttcatcgtttgcaaattcatcacctttttcgactt
tcttactaactttaaaggcttaattaagtaaatggaatactatccaatta
aaactcgattcgcgtttctatgacttttttgagacctctttaaattttca
gattgatttccagtgttaaaattgacgtctttcagaattgttagaatttc
aatccaaaccatgagattaacctagaatcccatgcttgttttcgtgaaat
tctggataaattaccctcggtcaaatttctcgttgcactcgggaaatttc
aaaaaatttcaaaattgacctcgggaaatttatcccgaatttcccttata
accatgagattactagtacgaATGTTTGACCAATCCCTATGGTCATGCGA
CGTCTTATGGACATTCAATGGACGGCTTTAAGACCTTTGGATAtcctaga
aacgtacattagacgtccaaaagGCATTTGTGTCCATTGAGATAGGGTTA
TCCCATAACTCCTGATTACCGTAATTTCATTTCGACCGTAAAATGCAGCT
ATTGGCACGAGTTGAAAGGTTGATTTTCTGGAATGAGTTTTTGCAGTAGA
CTGAATTCCGATGGTtctaactataaaccctcgaatgtgacagagcccga
ttttcaaaaaaaaaaaatttggggcaaatttgggccaaaaaacggctaaa
aacgggttttttgggctttgtgaaaaattaggtcgttaattttttctgat
tttttgcatgaaagtagggtaccatcgtaggtaaaagatggtttaagcag
atttttgcaaaaatattttgttggctcaaaaaacgcatgtttatctataa
gaatcactattaataagcatacatcaatgttcttagtcaaattactcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009588-exon-sc0000097-1491911889:404529..404773 | TCONS_00009588-exon-sc0000097-1491911889:404529..404773 | Clytia hemisphaerica | exon |
| TCONS_00009588-exon-sc0000097-1510915933:404529..404773 | TCONS_00009588-exon-sc0000097-1510915933:404529..404773 | Clytia hemisphaerica | exon |
| TCONS_00009588-exon-sc0000097-1575043694:404529..404773 | TCONS_00009588-exon-sc0000097-1575043694:404529..404773 | Clytia hemisphaerica | exon |
| TCONS_00009588-exon-sc0000097-1491911889:406416..406662 | TCONS_00009588-exon-sc0000097-1491911889:406416..406662 | Clytia hemisphaerica | exon |
| TCONS_00009588-exon-sc0000097-1510915933:406416..406662 | TCONS_00009588-exon-sc0000097-1510915933:406416..406662 | Clytia hemisphaerica | exon |
| TCONS_00009588-exon-sc0000097-1575043694:406416..406662 | TCONS_00009588-exon-sc0000097-1575043694:406416..406662 | Clytia hemisphaerica | exon |
| TCONS_00009588-exon-sc0000097-1491911889:408266..408714 | TCONS_00009588-exon-sc0000097-1491911889:408266..408714 | Clytia hemisphaerica | exon |
| TCONS_00009588-exon-sc0000097-1510915933:408266..408714 | TCONS_00009588-exon-sc0000097-1510915933:408266..408714 | Clytia hemisphaerica | exon |
| TCONS_00009588-exon-sc0000097-1575043694:408266..408714 | TCONS_00009588-exon-sc0000097-1575043694:408266..408714 | Clytia hemisphaerica | exon |
| TCONS_00009588-exon-sc0000097-1491911889:409504..411078 | TCONS_00009588-exon-sc0000097-1491911889:409504..411078 | Clytia hemisphaerica | exon |
| TCONS_00009588-exon-sc0000097-1510915933:409504..411078 | TCONS_00009588-exon-sc0000097-1510915933:409504..411078 | Clytia hemisphaerica | exon |
| TCONS_00009588-exon-sc0000097-1575043694:409504..411078 | TCONS_00009588-exon-sc0000097-1575043694:409504..411078 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:404529..411078 + |
Blast
The following BLAST results are available for this feature:
|
