TCONS_00009591 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009591
Unique NameTCONS_00009591
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1062

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009591 ID=TCONS_00009591|Name=TCONS_00009591|organism=Clytia hemisphaerica|type=transcript|length=1062bp
TAGGACGGTTTGGTATACGCTTTgccaatttctcaaaaactataAAACTT
TAGATACTCTGATTATTTCTTTGTTTAACgctttccttttatttttcttc
tagatgaaaatttaaaaaaagtagctACAGCACTTTAAGAAATAACTAAT
GAtggaaataaaataataaaataatatggCATCTGATGGTTGATCAATAA
GAGATATCTTGTAATTGACAAGAAGAAGAATCCGGATCATTTTTCCACTA
CCTATCAATTCCAAATCATGGGCAAAAAAACACCGAAAGTGAAGAATGTG
GCAgaacaaagaaaatacaaagaacGATATCAAATCCTTCGAAGACAAGT
CAAACATCAAGTCTTTATGAATGCAGCTTTATCTGACGAAGTTACACACA
TGGAATCTCAATTCATGCTTTTAAAGAATGAACGAAAATTTTTATTGAAG
AAATTGTTCAAACATTTACCAATGACTGAATCACAATGTCTTGAAAGCAC
CAAAGCTTTGAACGCCTTAGAAAGCTCACATCCTGGACAAATACCGCACA
GTATATTGAGCTCAGTACAACCCACTGTCTCGCCGGCTAAGAAAGGCAAC
AATGCAGTGTCAGAATCACCAGCCACTTCAAGCAAGAAGCATCAACAACA
GCAAGATCCTTCTAGTGCCAACAAACCCAAACGAAAGAAACCTGGAAGTG
TGAAAAAGAAAGTTCAACCACTTCACATGAATGATGAAAATGTTCCTTTC
TTTCCGATAACGATTGGTACATTGACTGTCCACGATCTAGGAGAGATTCT
CTCCGATAAAGCTGGATTCCACTCAGAGCGTTATTTATGGCCAGTTGGAT
TCTGCAGTACTCGATTATATCCAAGTATGGTTGATCCTGACAGAAAAATT
CTATATTTTTGTTacatcaaagatggcggaaatGAACCATTGATCATGTT
ACAAAATACTGGCGAGAANacttttcaaaaaaagcttcaCAACATAAAGG
AAAATCGAAGATTTAAGCAATGCTACAGTTCAGTGGCTCCGTAATCATCA
attaaatctttt
Run BLAST on NCBI

protein sequence of TCONS_00009591-protein

>TCONS_00009591-protein ID=TCONS_00009591-protein|Name=TCONS_00009591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MGKKTPKVKNVAEQRKYKERYQILRRQVKHQVFMNAALSDEVTHMESQFM
LLKNERKFLLKKLFKHLPMTESQCLESTKALNALESSHPGQIPHSILSSV
QPTVSPAKKGNNAVSESPATSSKKHQQQQDPSSANKPKRKKPGSVKKKVQ
PLHMNDENVPFFPITIGTLTVHDLGEILSDKAGFHSERYLWPVGFCSTRL
YPSMVDPDRKILYFCYIKDGGNEPLIMLQNTGEXTFQKKLHNIKENRRFK
QCYSSVAP
Run BLAST on NCBI

transcript from alignment at sc0000097:412874..424802+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009591 ID=TCONS_00009591|Name=TCONS_00009591|organism=Clytia hemisphaerica|type=transcript|length=11929bp|location=Sequence derived from alignment at sc0000097:412874..424802+ (Clytia hemisphaerica)
TAGGACGGTTTGGTATACGCTTTgccaatttctcaaaaactataAAACTT
TAGATACTCTGATTATTTCTTTGTTTAACgctttccttttatttttcttc
tagatgaaaatttaaaaaaagtagctACAGCACTTTAAGAAATAACTAAT
GAtggaaataaaataataaaataatatggCATCTGATGGTTGATCAATAA
GAGATATCTTGTAATTGACAAGAAGAAGAATCCGGATCATTTTTCCACTA
CCTATCAATTCCAAATCATGGGCAAAAAAACACCGGTAAGATATTCCTAT
CTTGGCCGCAATCTGGTCTAATTTTGAGAGAAGTACCAATTTTCTGGTGG
TTTTCATATAAGTTCGACAAAAACCATATCCAAACCGAAGGCCCACGGAA
GTTGTAATACTATAGGTTAAGAAAATATTAAGTGCTCGCCTTGTTTCGAT
TTTTTGTATATTGTTTACACCAAATTTCCAACCCCACGTCAAGTTTGACG
TCAGAAGTGAGGATCTCAAAAACACGAAGTATAATATAAAATTCCATGGG
ATCTCTCAATCGAAATgcagaaaaaagttgaaaaagccAGAGTggcttaa
attttcataaagaaaATGATGTGTTTTTTTCTAAGGGATTTCATAGTGTT
TATAAGAAACCCTgatctggaaggcttttgtttttttctattgttaacaG
AGCTTTTGTAAGTAAATCGGATTTCTTTTGCATATTTTTTGATCACGTGA
CTAGAAAATGAACCAATCCCATGAGTCGAAAAtgataatgtgatcaaaaa
gtattattttcaacaaaagaaagttTGACAATAAAGCTTAAACAACCCAT
TACCAGACgaggtttttttataatgacgaTGATGATTTACTTTGACGAAT
ATTGTGTAAGATTTAGTTTTTATGAGCAAGGTATTTTCCCGTGTTCGTtc
tatgcaccactggagagtcttctgagaacttttaaaattttccacccaat
acgtcacttaaacaatagaaaaagtgacgtattgggtggaaaaaaaacag
gaaaattgcataatttcgtgaagtcattgcagtttTTGATGTTAAGcgcc
aatttttttccataTCTACTAGAAAGTGAAGAATGTGGCAgaacaaagaa
aatacaaagaacGATATCAAATCCTTCGAAGACAAGTCAAACATCAAGTC
TTTGTAAGTTGAATATCTGTTACTTAAAAGGATATCATTTAACGTATTTA
ACGAACCATTCGCTTACACGTGTtattataacaatagcgttcagtttgag
gtcgttgttgttattttctgcccgcgcagtttgattattagcccgagagt
gtcattttggcccgacgcgaagcggagggcgcaaatggcactagagggct
aataatcaaactgcaagggcagaattaatgacaacaacgaacgaaaactt
aacgctattactaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNgacattcaaacaacgtttttttctagcgtcagccaagtctttttgctt
caatgcaatgtcttcaacaagttttgagtacccttgcgagcgggccgcaa
atggccaaaaagtgtttttctctgacgtcggtttagtttcaccgcttcaa
tgcaacgacttcaataaagttccgagcgggccgcaaatgacgttatcgcc
ctataaccagggcggttaatgatattttagcCCTCTGAAGCGCGACGCCT
TATttttctcagcgcgggtatgactatttgagtcatagaaccctttaata
ccgcccgccgttcgaatctttaatggcttacttaatgaccgctatatgga
taataatttcaaacaaaagaaagagtagcctatactagacctCACTGCTT
TTTATTTACGCAGTAACGCCTATTCCACTtagcgactttttcgaatgttt
tgagcccaggtttttcgggctccaaacgttccattttttgacgtcacttt
aaacttttgaagctcttgcagtagcgaaaaaatcgaatttgcgtcaaagc
actggAAAGGctcctatttttcaaaaatcgtcaaagtggaactcactaag
aaacgagatgaaaaatcccggtttttagtgaggagTGCGCTAAAGAAAGA
GCACTTTTCTCTGTTTTCAGCGCCGCGCAAGcacaaattttaagaaatcC
CTTAGTTTATTCTGATTTGCCAGTATAGAGGGGCAATCTCTATTAACCCG
ACTTCGACCTCGACCCTGACCCTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNcccccccccccccaccgacGACTATTCT
TGAAGTATTCTTTAAGTGTTCTAATGATCAGTTTTTGGAATATTCATCca
ttttattgtattttggttGAGGGTCGtcttttttccaagggtcgagggtc
ggcctttttcaagggtcaaGGTCGAGGTCGGGTTAATGGAGATTGCCGTA
TAGAGGCGTGTCTGCTTTCTATGACCATACTCGCACGTGAAGTTTCCGTT
TCGCTCCAAAACGAattgaagccattctattggttacactCATATGTGAC
GTCACtcctaaccaatagaatggcttcattttgttttggaatgcttacta
tatcataaaaaagaaatatctttATAGGGAAATTCGCTAGACGTAGTGCA
GGGGGGGGTCaggatccagataccaaacccagggccggggggtggtgtca
atttttttttccaaatttcaaaaagtcaagttggtatcgatacNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTTGAATCGTTTACACTATACCCTGAT
Tccatataaaagcattcttcattctataattgaaattaaatttttattta
acttttgctgctctcaatcctttcgatcaaccaaaattcattcaaaacta
gagttgaacaaactgaatcaagtcttagaacttttttagtcgtgataaaa
tttttctgtacataacgtttatccggggggtactagggttggcgaatgag
gggtatgtagGAACGGGACCTCTGAAAACcaacccttaaagagactgagt
tttgctgaaaaggtgacccttagagagactctttgaatttttttttcgat
ttttgaaaaaagtcatacccttagagagactttattacaactttttctct
ggaaatcaaaaaatttcctaaaattccTGAATTTNNNNNNNNNNNNNGGG
CGCTCATCATATAGGATAATGTTACAAAGACTCTAGGCGTGCCTAATACA
ATGAAATTTTTATCTAGTCTAGTTTATCAActtgttttatgaattttata
cattttgccaatttagttcaaaaaacttaatttacgttgttttagaatga
gaaaaacttgtcttattttcattttcagtagtctaaagtgtggtacataa
tataagtgattcataagaggaatgttctttgaataaaaacatccacagaT
TCTGTTTAGCGTCCCTTGTATGCAGTATCTTATGCATAtaactttttgca
tttttactgattgccaatttagggggggtgggtccccctttttcagaaaa
ataggGATTGTTAAGTTCGTATTGATACCAATTTAGGGGGGTGGGTCCCC
CCTTTTTTAGAAAATTGGGATTTTCAAGTTGGtattgataccaatttagg
gggtggtggtgtctactactttcaaatctcgaaaagtcaggtttttgggc
cctgggttggtatcctggaccctgaccccccctGCGTAGTGTAATCTAAG
ACTTTATAGTCTAGATagtgttttgattgttttgacgGGGTCCACGGCAA
AACGGTTTTCTATGACAAGGGGATTCGAAGCGGGGACGCTTGAGGTGTGG
CGCTTACGCCATGAACCACCCGGACACGTTTACTTCAAATTATTCGCGTC
GTTTTTGTTTTCAGATGAATGCAGCTTTATCTGACGAAGTTACACACATG
GAATCTCAATTCATGCTTTTAAAGAATGAACGAAAGTAAGTAACTTTGAT
CTGCACTGAAGTCTTTTCCTGACCTGCTTGCAAAACCAGAAATATTCAAA
ACTGTGGGAAAACGAAATTAAAGTGGTTCTTTTGGGTTGTTGCTTTAATG
ATCGGCGTTTGATTTTGGTGTAATTCTTTTAATACAGCCAATTACTGGGC
TCAAAAATCATAAATATTCATCCAAGATATGCTAGGAAATCACCAAAGAG
AACCCCAAGCCTGGGAATATTCTCCTACGGAACCACTGCTAATGCTTGTC
GTGCGTGAGGTAATAATGATCTTTTCAAGTATATGGGCTAAATCGACACA
AATCCTGTCAAACCTTTCTTTTATTCTAGATTTTTATTGAAGAAATTGTT
CAAACATTTACCAATGACTGAATCACAATGTCTTGAAAGCACCAAAGCTT
TGAACGCCTTAGAAAGCTCACATCCTGGACAAATACCGCACAGTATATTG
AGCTCAGTACAACCCACTGTCTCGCCGGCTAAGAAAGGCAACAATGCAGT
GTCAGGTACGTAAATatgacccaaaaaaatatttttgaccccCATCAAAG
GCAAAGGGGAGGTTTAactttaaagaaggaaaaatcggaaaatgcGAAGT
TTAGGCAATTTTCTGAAaacgaaaactttttttctggctggttgtgctcg
tcgaaatgcatcaaaatggcgaaaactaaagaaataccaaaaaaaaatcg
aaattcaacaaaataatgGATTCTGCACCCCTGACAACTGCTTCATGAAC
GAGATTGTGAAGGACAATGATGTGCTACAATGTAGAAGATGCGAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNATTGTAAAGACGACTGATTAGAGGCCAACTGTGCGCCT
ACAAAAtgttaaatatgattatttcatagaggtcgatagacctgcgaaat
atattacTATAAATGAAAGGTTTGGATTTGTCAGTGGTCTTTCGAATAAC
TCTTGATACAATAATATCCAAGACAAATACGAAACAACCTTTTCAGTGTG
TCCATACAGCCTAAGTCGAGAAGGgatatttatgatttttaaaacatttg
gcGAAAACTTTTAGCTTTTCTATGTTTTAGGCTTCAGCGACATATATGAA
ACCATTGTGATAGTCTTGAGTTGTCATTCTAACTTTATATATAGCTGAAT
ATCTTGATAAAGCAGACGTTAGAATAGACTTGACCGTTTCCCTCATTTTC
AGAATCACCAGCCACTTCAAGCAAGAAGCATCAACAACAGCAAGATCCTT
CTAGTGCCAACAAACCCAAACGAAAGAAACCTGGAAGTGTGAAAAAGAAA
GTTCAACCACTTCACATGAATGATGAAAGTAAGAGAAATTCATAAATAgc
tccccgggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccgggggggggg
ggtactagggcaagatgggttacggggatgctccgctggtcagggtacct
tttttaacctccacgagtcccacgtagggtctaccaaaatagaaaaatca
gtccctcgtagggtgaccatttttggaaaatttggggaaaaagtagaaaa
tttgagaacattttgaaattttagtcccattcagagtcacttttttcgca
aatttcgagtcccacgtagggtccatttttcgaacctcagcggagcaccc
ctgtcggtcgacaagggtagtacgcCCTCCTCCCGGGAATAGCTCTTACA
AAAACTTAAATTGGAAAACTCAGACCAGCTCAGTCCTTTCATGATACCAT
TATTTGAGATGGTTCTTATATACATAACGGAGGGGTTCCACCAGTGTTTT
ATTTCCATCATTACATTTTGAACCTAGCATAATGTTGCCCCTctaaattt
gtttatttatccTTGTTATAATCCATAAATAGGGAAGGGTAATAGATCCT
AAAGGTTACAAATCAAGATTGTTCGAAAACCTCTTAAACTCTGTACTATA
TTGTTCTGAATTAGAGTATTGTAAAAAATCTCTGTGTCCCATATGTTATA
TCCATGATANTGTTCGAAAACCTCTTAAACTCTGTACTATATTGTTCTGA
ATTAGAGTATTGTAAAAAATCTCTGTGTCCTATATGTTAtatccatgata
tgcaccactggagagccttccaagaattttcaaaatttttcacccaatac
gtcactttttctattgtttaagtgacgtattgggtgaaaaatttttaaaa
gttctcagaagactctccagtggtgtatatcatgaatactaATCTTTATA
TACcttggaccaagctatatccgtcATTTTTGACCGTAGTTTTTAGAAAA
GTGGTACCTTATTAATTTTAGCACTGCTCAATGTGAgtcaatttattttt
tccaccaACATTGAGCAgagctaccattagggtacctatttcaaaaaact
ccgatcaaagatctTGATTGGTCGGGATCAATAAAATGTGTTCAGGGTAT
ATAAaggcatggaggtataaagaaagacaggagatgaatttgtcggtaat
tggtcgttaaagtcttttgatttcttttatgtaataaatcaaaaggaatt
ctaggctcgcccgatgaaatacgactttttagtagaactcaagttttctc
tgaacattcttactatcagcatcgaagatttctagccttctaatatacga
gNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNaataaaatttagctccacgaaataagtttgcgttcaattttgtca
tccattaaattttgttttgaaaagatattttctccagccagaaaatgaaa
agttctttataagcatacacaatttcagacccaacNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtctcgtctcatctaatttctacaA
CTGAAataagccaataagatttcacctatcaacaaaagagctcattaaaa
atgcacgatatatgagattatgagcatgcatacgtcgtaatttttttaat
cgtagggcgagcatggttacaatacatagcatacttctcctgttttttta
tacctctatgataaaggtcagtgatcatGGCCTGTTACAAAATCCATACT
TATTCCTTTTAGATGTTCCTTTCTTTCCGATAACGATTGGTACATTGACT
GTCCACGATCTAGGAGAGGTAGTTAGTCTTCTTATTCTTTGTTTCTTACA
CCTCTGTCTCGTAGCTCCGGTGGAACTCCTTTCCACAGTGAGGATGAAAA
TCTCTATCGAATCCCAACGGGGATAGAGATTTTACTCATCAAAAAATGGG
GATGGTTTTTTGGATTGAAATTTTCtctcattgaatttcaaagtgatgaa
aacaaagtcaattttccagtgagcCGAATTGTAGGGtctttttcccaccg
gggacgacattttagccaaatttttcagtggatAGGGGCAAcaatgggtc
tgtgacacagggttgTTTTCTTGCTCATTTTAGCCATGGTNcctgacttt
tgaccttttgagctaagttaacaccaccaccccaaaattggtatcgatac
caacttgaaaatcataattttcagaaaaaggggggacccacccccttgtt
ttggtatcgataccagcttgaaaatcataattttcagaaaaaggggggac
tcacccccttaatttggtatcgataccaacatgactttttgaatttgaca
aaatatcatgggacccaccccctaatttagtaccaataccaatctgacaa
atttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTGAAATTTTCtcccattgaatttcaaa
gtgatgaaaacaaagtcaattttccagtgagcCGAATTGTAGGGtctttt
tcccaccggggacgacattttagccaaatttttcagtggatAGGGGCAAc
aatgggtctgtgacacagggttgTTTTCTTGCTCATTTTAGCCATGGTAT
TTCTATTACAACTCTTCATTTTTAGATTCTCTCCGATAAAGCTGGATTCC
ACTCAGAGCGTTATTTATGGCCAGTTGGATTCTGCAGTACTCGATTATAT
CCAAGTATGGTTGATCCTGACAGAAAAATTCTATATTTTTGTTacatcaa
agatggcggaaatGAACCATTGGTAAGTTATTGAAACAAGTAACAGTTTT
TGATCAGCGGACATAATGGCTGTCCTGTAATGAGAGAATTCACTTCATAT
ACGCGATCTGAATAAATATCCTGGTCAAATCATGGTTAACAAACAAAATA
ACCGATAAGaacatagtccgtataaaaaaccccggtgtgacaaaaaaaat
taactccCCTAAATAATGCCTCCCCAGTCATAATAAACTAGTAAATAGTG
ACTCCCCACCTCAAAATAAACTAGTAAATGAAGACTCCCTAGAGTTACTA
TTTCCTAGGAAATCTTGACCCCCTTNAAATATTTACAGTAATCCCAAtgt
gatgaaagttagatacaGTACGTCCATAAAAAATTAGTTCTCCGTCTTTG
AAGTGGTATagcttttcgaatttttggtcaattttgaaaattcttccaCA
GTGAGATGGAGCATTTATCAGGCTGNAGTAAATGAAGACTCCCTAGAGTT
ACTATTTCCTAGGAAATCTTGACCCCCTTTGGTTTAAAATGACTCCCCTC
TATTATCTATgacaaaatcatttaaaaattcatttggCTATCCAGGGCTA
ACTCTACAGACCCTCGTAAGAGAAATACTCCATCTGAGGGAAGCATTTCC
TACAAGAATTTTTAGATTTGGCTCAAAATTTGTATACTGTATACTTCCCT
CTTTTTAAGATCATGTTACAAAATACTGGCGAGAANacttttcaaaaaaa
gcttcaCAACATAAAGGAAAATCGAAGATTTAAGCAATGCTACAGTTCAG
TGGCTCCGTAATCATCAattaaatctttt

Coding sequence (CDS) from alignment at sc0000097:412874..424802+

>TCONS_00009591 ID=TCONS_00009591|Name=TCONS_00009591|organism=Clytia hemisphaerica|type=CDS|length=777bp|location=Sequence derived from alignment at sc0000097:412874..424802+ (Clytia hemisphaerica)
ATGGGCAAAAAAACACCGAAAGTGAAGAATGTGGCAgaacaaagaaaata
caaagaacGATATCAAATCCTTCGAAGACAAGTCAAACATCAAGTCTTTA
TGAATGCAGCTTTATCTGACGAAGTTACACACATGGAATCTCAATTCATG
CTTTTAAAGAATGAACGAAAATTTTTATTGAAGAAATTGTTCAAACATTT
ACCAATGACTGAATCACAATGTCTTGAAAGCACCAAAGCTTTGAACGCCT
TAGAAAGCTCACATCCTGGACAAATACCGCACAGTATATTGAGCTCAGTA
CAACCCACTGTCTCGCCGGCTAAGAAAGGCAACAATGCAGTGTCAGAATC
ACCAGCCACTTCAAGCAAGAAGCATCAACAACAGCAAGATCCTTCTAGTG
CCAACAAACCCAAACGAAAGAAACCTGGAAGTGTGAAAAAGAAAGTTCAA
CCACTTCACATGAATGATGAAAATGTTCCTTTCTTTCCGATAACGATTGG
TACATTGACTGTCCACGATCTAGGAGAGATTCTCTCCGATAAAGCTGGAT
TCCACTCAGAGCGTTATTTATGGCCAGTTGGATTCTGCAGTACTCGATTA
TATCCAAGTATGGTTGATCCTGACAGAAAAATTCTATATTTTTGTTacat
caaagatggcggaaatGAACCATTGATCATGTTACAAAATACTGGCGAGA
ANacttttcaaaaaaagcttcaCAACATAAAGGAAAATCGAAGATTTAAG
CAATGCTACAGTTCAGTGGCTCCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005356XLOC_005356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009591-exon-sc0000097-1491911889:412874..413158TCONS_00009591-exon-sc0000097-1491911889:412874..413158Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1510915933:412874..413158TCONS_00009591-exon-sc0000097-1510915933:412874..413158Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1575043694:412874..413158TCONS_00009591-exon-sc0000097-1575043694:412874..413158Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1491911889:413996..414076TCONS_00009591-exon-sc0000097-1491911889:413996..414076Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1510915933:413996..414076TCONS_00009591-exon-sc0000097-1510915933:413996..414076Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1575043694:413996..414076TCONS_00009591-exon-sc0000097-1575043694:413996..414076Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1491911889:417688..417758TCONS_00009591-exon-sc0000097-1491911889:417688..417758Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1510915933:417688..417758TCONS_00009591-exon-sc0000097-1510915933:417688..417758Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1575043694:417688..417758TCONS_00009591-exon-sc0000097-1575043694:417688..417758Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1491911889:418103..418278TCONS_00009591-exon-sc0000097-1491911889:418103..418278Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1510915933:418103..418278TCONS_00009591-exon-sc0000097-1510915933:418103..418278Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1575043694:418103..418278TCONS_00009591-exon-sc0000097-1575043694:418103..418278Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1491911889:420076..420201TCONS_00009591-exon-sc0000097-1491911889:420076..420201Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1510915933:420076..420201TCONS_00009591-exon-sc0000097-1510915933:420076..420201Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1575043694:420076..420201TCONS_00009591-exon-sc0000097-1575043694:420076..420201Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1491911889:422336..422391TCONS_00009591-exon-sc0000097-1491911889:422336..422391Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1510915933:422336..422391TCONS_00009591-exon-sc0000097-1510915933:422336..422391Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1575043694:422336..422391TCONS_00009591-exon-sc0000097-1575043694:422336..422391Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1491911889:423849..423995TCONS_00009591-exon-sc0000097-1491911889:423849..423995Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1510915933:423849..423995TCONS_00009591-exon-sc0000097-1510915933:423849..423995Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1575043694:423849..423995TCONS_00009591-exon-sc0000097-1575043694:423849..423995Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1491911889:424683..424802TCONS_00009591-exon-sc0000097-1491911889:424683..424802Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1510915933:424683..424802TCONS_00009591-exon-sc0000097-1510915933:424683..424802Clytia hemisphaericaexon
TCONS_00009591-exon-sc0000097-1575043694:424683..424802TCONS_00009591-exon-sc0000097-1575043694:424683..424802Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009591-proteinTCONS_00009591-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:412874..424802 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.4256	61.1622	51.6602	44.506	56.0888	48.3554	98.3898	103.725	44.3715	36.2935	26.6312	44.486	16.3755	17.3221	19.1063	17.3866	17.797	18.5293	11.4511	14.3423	22.6401	21.478	24.7502	27.5308	54.4793	54.0815	95.1839	63.3599	26.9595	28.6433
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003888FYrich_N
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
Blast
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BLAST of TCONS_00009591 vs. Swiss-Prot (Human)
Match: TBRG1 (Transforming growth factor beta regulator 1 OS=Homo sapiens GN=TBRG1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.519e-27
Identity = 89/234 (38.03%), Postives = 131/234 (55.98%), Query Frame = 1 
Query:  274 KKTPKVKNVAEQRKYKERYQILRRQVKHQVFMNAALSDEVTHMESQFMXXXXXXXXXXXXXXXXXPMTESQCLESTKALNALESSHPGQIP--HSILSSVQPTVSPAK--KGNNAVSESPATSSKKHQQQQDPSSANXXXX--------XXXXXXXXXXQPLHMNDENVPFFPITIGTLTVHDLGEILSDKAGFHSERYLWPVGFCSTRLYPSMVDPDRKILYFCYIKDGGNEP 939
            KK PK    ++  KY+ +Y  LR+  K  VF NAA+ DE+  +E +F+  K ER++LLKKL +   +TE +       + A   SH   +P  + + SSV  T+  A    G +  +E P     K ++++     NK +         K  G  +K VQP+ ++    P FPI +G LTV+ LGEI++D+ GFH E  ++PVG+CSTR+Y SM  PD+K LY C IKDGG +P
Sbjct:   23 KKLPKK---SQNEKYRLKYLRLRKAAKATVFENAAICDEIARLEEKFLKAKEERRYLLKKLLQLQALTEGE-------VQAAAPSHSSSLPLTYGVASSVG-TIQGAGPISGPSTGAEEPFGKKTKKEKKEKGKENNKLEVLKKTCKKKKMAGGARKLVQPIALDPSGRPVFPIGLGGLTVYSLGEIITDRPGFHDESAIYPVGYCSTRIYASMKCPDQKCLYTCQIKDGGVQP 245
The following BLAST results are available for this feature:
BLAST of TCONS_00009591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBRG11.519e-2738.03Transforming growth factor beta regulator 1 OS=Hom... [more]
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