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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009592 ID=TCONS_00009592|Name=TCONS_00009592|organism=Clytia hemisphaerica|type=transcript|length=794bp
NCCAACCAGCCCAGCCAATCAGCGCAAGCACAGCAACAGCGTGTCATTGT
ATTGTTCTCAAACGGCTAAATAAAGCACGTGGTAAAGAGACAACGAATAC
GGGGTCTGGACCTGAGTTTTTTGGATTCTCCCATCCCACAATACAGTACT
TAATACAATGTTTAACCGGAGCCGATCAGTGTGAAAAATATGTTCGATCA
GCTTTCGAATTCTCACCAATTACTGCCACTTCTACCTCATCTAACATGAT
CAGAGAAGGAAATTTACCGAACATGAAAGCATTCGATAGAACGAACCTTG
AACTTCCAAATATCCAATCGATCTAGACAAGAGACGCAACGAAATAATGG
AAATAGTTTGAAGGGACCACCCTTGTTCGCCACATAAAGATACGATGTTT
GCCATTTGGACTTGACATATAAAATATAATGAAGTACACCGCAGATTATA
TTATACTACTTTTTGGAAGGTGCAAATTTTtcgaagaaatatttttaaca
ttataaatattgttatttttcatcCCTAGAGATAAAATCTTCTTAATTTG
ATTTTCTCGCATATATAAGGGTTCAAGAAATGTTAATTGATAGAAAAAGA
AGTCTATTCCAATAATATCACGATTCATATATAAATTCGAGTCCTGTGTC
TTTAGTGTTTTTAGTTTCCCATTCTTTGAATCGTTCTATTGTCGCTTCat
caaaaatatctttccaacgaccTGTCTGTCCTTTGTGAATGACTTGGCCT
GGATTATcatttttctgaatttgacaCATCATCTGAAGAAAATG Run BLAST on NCBI protein sequence of TCONS_00009592-protein >TCONS_00009592-protein ID=TCONS_00009592-protein|Name=TCONS_00009592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
QPAQPISASTATACHCIVLKRLNKARGKETTNTGSGPEFFGFSHPTIQYL
IQCLTGADQCEKYVRSAFEFSPITATSTSSNMIREGNLPNMKAFDRTNLE
LPNIQSI Run BLAST on NCBI transcript from alignment at sc0000097:427592..428978+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009592 ID=TCONS_00009592|Name=TCONS_00009592|organism=Clytia hemisphaerica|type=transcript|length=1387bp|location=Sequence derived from alignment at sc0000097:427592..428978+ (Clytia hemisphaerica)
NCCAACCAGCCCAGCCAATCAGCGCAAGCACAGCAACAGCGTGTCATTGT
ATTGTTCTCAAACGGCTAAATAAAGCACGTGGTAAAGAGACAACGAATAC
GGGGTCTGGACCTGAGTTTTTTGGATTCTCCCATCCCACAATACAGTACT
TAATACAATGTTTAACCGGAGCCGATCAGTGTGAAAAATATGTTCGATCA
GCTTTCGAATTCTCACCAATTACTGCCAGTAAGTGTTATTATACTTTCTT
TAacagttttttaatgaaatttgtaCACTTTCTTGGACCTTTTTTGTGAC
TATTTAGATAGATCTTTTTAAAACTCTAGATTCAACCCAGCTAAGAATTC
ACTATTTCGTACGAAAACTTAATTTTGTTTACGTTTTAAAGTCTGGTAGT
CCTCACATTTTGGTACATTGCTCCTGATTGGGCTTTTGATGCGAAAAAGA
TATATGTAAATAACTCATTAGAGGATAATCTTAATTTTAGGATTTTAGTA
TTTTCCAAAAtacaaaatgaagatgaaaaatataTACTGGATAAAAAATG
TTGAGTTTGGGAAGCGCACGTGGTATGGGCGGGGTGGTACAGGCTAGAGG
ACAAGCCTGATTTGCATCTTCTCTTGAAACACGAGACTGACATTTTCACA
TTTCTGCTTCGTCTTTTAGCTTCTACCTCATCTAACATGATCAGAGAAGG
AAATTTACCGAACATGAAAGCATTCGATAGAACGAACCTTGAACTTCCAA
ATATCCAATCGATCTAGACAAGAGACGCAACGAAATAAGTATTTCATAGT
CCTGTCCTCACTATTTCGGATAAAACAATACAGTTCACTCAACTATTGTT
ATATTTATTATCGACTTTACGCTCgttgaaaacttgtaaaataaCGTCGA
GTTcatagaaaattaaattgaataaattatttttctgtaGTGGAAATAGT
TTGAAGGGACCACCCTTGTTCGCCACATAAAGATACGATGTTTGCCATTT
GGACTTGACATATAAAATATAATGAAGTACACCGCAGATTATATTATACT
ACTTTTTGGAAGGTGCAAATTTTtcgaagaaatatttttaacattataaa
tattgttatttttcatcCCTAGAGATAAAATCTTCTTAATTTGATTTTCT
CGCATATATAAGGGTTCAAGAAATGTTAATTGATAGAAAAAGAAGTCTAT
TCCAATAATATCACGATTCATATATAAATTCGAGTCCTGTGTCTTTAGTG
TTTTTAGTTTCCCATTCTTTGAATCGTTCTATTGTCGCTTCatcaaaaat
atctttccaacgaccTGTCTGTCCTTTGTGAATGACTTGGCCTGGATTAT
catttttctgaatttgacaCATCATCTGAAGAAAATG Coding sequence (CDS) from alignment at sc0000097:427592..428978+ >TCONS_00009592 ID=TCONS_00009592|Name=TCONS_00009592|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000097:427592..428978+ (Clytia hemisphaerica)
CAACCAGCCCAGCCAATCAGCGCAAGCACAGCAACAGCGTGTCATTGTAT
TGTTCTCAAACGGCTAAATAAAGCACGTGGTAAAGAGACAACGAATACGG
GGTCTGGACCTGAGTTTTTTGGATTCTCCCATCCCACAATACAGTACTTA
ATACAATGTTTAACCGGAGCCGATCAGTGTGAAAAATATGTTCGATCAGC
TTTCGAATTCTCACCAATTACTGCCACTTCTACCTCATCTAACATGATCA
GAGAAGGAAATTTACCGAACATGAAAGCATTCGATAGAACGAACCTTGAA
CTTCCAAATATCCAATCGATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009592-exon-sc0000097-1491911889:427592..427819 | TCONS_00009592-exon-sc0000097-1491911889:427592..427819 | Clytia hemisphaerica | exon |
| TCONS_00009592-exon-sc0000097-1510915933:427592..427819 | TCONS_00009592-exon-sc0000097-1510915933:427592..427819 | Clytia hemisphaerica | exon |
| TCONS_00009592-exon-sc0000097-1575043694:427592..427819 | TCONS_00009592-exon-sc0000097-1575043694:427592..427819 | Clytia hemisphaerica | exon |
| TCONS_00009592-exon-sc0000097-1491911889:428261..428379 | TCONS_00009592-exon-sc0000097-1491911889:428261..428379 | Clytia hemisphaerica | exon |
| TCONS_00009592-exon-sc0000097-1510915933:428261..428379 | TCONS_00009592-exon-sc0000097-1510915933:428261..428379 | Clytia hemisphaerica | exon |
| TCONS_00009592-exon-sc0000097-1575043694:428261..428379 | TCONS_00009592-exon-sc0000097-1575043694:428261..428379 | Clytia hemisphaerica | exon |
| TCONS_00009592-exon-sc0000097-1491911889:428532..428978 | TCONS_00009592-exon-sc0000097-1491911889:428532..428978 | Clytia hemisphaerica | exon |
| TCONS_00009592-exon-sc0000097-1510915933:428532..428978 | TCONS_00009592-exon-sc0000097-1510915933:428532..428978 | Clytia hemisphaerica | exon |
| TCONS_00009592-exon-sc0000097-1575043694:428532..428978 | TCONS_00009592-exon-sc0000097-1575043694:428532..428978 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:427592..428978 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003889 | FYrich_C |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005634 |
nucleus |
Blast
The following BLAST results are available for this feature:
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