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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009593 ID=TCONS_00009593|Name=TCONS_00009593|organism=Clytia hemisphaerica|type=transcript|length=1185bp
CGAAAACACATGTTTGCGTCAGGTCGAGGTTGCTATAATCCTGCAAGTGC
AAGTGGCTGGCAAGTGAGTCCACCGGTGTGAAATGTACACCTGAAATACA
TAATACAAGACTTTGAATTGAACTTAACTTTACAGAAATGGCTTTTCAAT
GTCGATGTGGAATTCAAGCTGTAAAGAATGCGAGCAAGGCTGCACGATTA
GTGGTTGGTTCAAGCTTAAGAGGTGTGATTGCCTCACCATTACTTTCTAC
ACAAAGAAATTTCTCTAACACAGAACACGCAACGAGATCACCTGAAGATC
AGTACGAGgATGTGGCCCAATTATTCAGTGATGTCAAACTAAAAGTACGA
GGCAGTGATGAAGCTGTTCTTGATAGTTACACACAATTCGTTCAACGAGC
AGCAACTACTTTGAACCTCGATATATCTGGAAAgATTGTTATTCCGATGC
ACATTGAGAAGAGAACGCTCTTGAAATCGCCACACGTTTACAAGACACAC
CGATATCAATATGAGTTACGTACGCATGCTCGCATGTTGCAGCTACGACA
AATGACTGGCAATACCGCTGATATCTTCTTGGAGTACATTCAACGAAACC
TTCCTGAAGGCGTCAGCATGAGCGTTGAAGCAACAGAACTTGAATCGATG
CCTGACTACTTAACAAGGGCCGCTATGGAAAATTCATCCTAGGAAAAACG
ACATAatattacatttttatcaaaaatttagaatattGAAAACTAGACAA
AAACTAaccattaaaaatatttttgagtttAACAGCGCGGCTTTTATTAT
TTAGTTGAAACAGAATATTGTAAATTTTATGAATAGTAATAAATATAAGA
ACACTGTACAGTTTTTTTAACATCGAAACTGGGATTCCTATTTCTCTCGT
CtggtttttcttttgttcttattttaattACTATTTCTTTGCTACTGTGA
TATATATTTCGCTCGCCTTATCAGCTTAAGAAGTTGCGTAATACGGCGTC
TAGCTAAAGGTGATTCCTTGACCGCGATCGAAAGTGAAATTCTGTTATTT
ATATGAAATTCTATAGCAGTTGAAatagaatcaattttaaaccGAAGCTT
AtcatatttaaaaaatctttgtgacctgtctcaaatatttttgcATTAAA
TTTTCTAACTTGACAAACCGGTTTTTTGAACCGCC Run BLAST on NCBI protein sequence of TCONS_00009593-protein >TCONS_00009593-protein ID=TCONS_00009593-protein|Name=TCONS_00009593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MAFQCRCGIQAVKNASKAARLVVGSSLRGVIASPLLSTQRNFSNTEHATR
SPEDQYEDVAQLFSDVKLKVRGSDEAVLDSYTQFVQRAATTLNLDISGKI
VIPMHIEKRTLLKSPHVYKTHRYQYELRTHARMLQLRQMTGNTADIFLEY
IQRNLPEGVSMSVEATELESMPDYLTRAAMENSS Run BLAST on NCBI transcript from alignment at sc0000097:497563..511777+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009593 ID=TCONS_00009593|Name=TCONS_00009593|organism=Clytia hemisphaerica|type=transcript|length=14215bp|location=Sequence derived from alignment at sc0000097:497563..511777+ (Clytia hemisphaerica)
CGAAAACACATGTTTGCGTCAGGTCGAGGTTGCTATAATCCTGCAAGTGC
AAGTGGCTGGCAAGTGAGTCCACCGGTGTGAAATGTACACCTGAAATACA
TAATACAAGACTTTGAATTGAACTTAACTTTACAGAAATGGCTTTTCAAT
GTCGATGTGGAATTCAAGCTGTAAAGAATGCGAGCAAGGTAATATAATAA
TGTCTGGTGATATTTTTAAGTTTAGGTCTGAAAACACCCTAGTAGGGtgg
tcaggccaaaattttcccctcaaattttgaaaaccaaactaattttattt
gaaagtccttacctttgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcaaaga
atcgcctccttacaccacgccagcaagaaataattttcggaagcaccaaa
atcgcgccaaaaatggcggatgaaatctagtcttccgtgtggtgggcgtg
aggagttttgctgacgctgtctgaaaatcggcccaataaactgttaaact
ttagcctatcgctaatgagctggaaatgatagctaaaaaaaaatttcacc
actagaaagctgaaatcctcagctttcagatggtgtatggtgcttaaatg
aaaaaatccgcaatcttgttaaaaaatcgcaatttcttcttatttttcga
aattccagacgacctgtagattttcaaataaagcaggtTGTGATAGagtg
tagcctaatcttaccctgggtttactaaaaaaaacgcgattgaaaagatg
aaccagctcaatagcgacagccatttgtttcaatgtgggtcgagaatNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcc
tgattgatttaaaaaaagaatgaacacatttggatgatttaaaggtaagt
actaatgccttgaagttcatttttgtaaattcttcctctttccgcgcaaa
aaatcccgacgagtgcgcaccctaacCCTAGTACTgtacatcaaaaattt
ttgtgaagatttttcaagttttattttttttttcaaaatctatcctatct
tgtagagctttgaaaaagaaagaaaatgaggggtcataggcctccagagg
ataccgtgaaaaagggtaactcgcatcagtggaggctaacatgcatatac
cCCAATTCACAGACCAACTAGAGCAGTATTACTTCTCTTCAAAGTGTTGA
CATGGAAACATTATGACAGGGGGGGGTCTTggagttactccttgacacta
tgtggagtaactgcaattttgaacattttctacagacaccaccacccttg
cagttattccataatgtactaactgattttaccctcaaaattggtgtata
ccacccccaaaaatgccaaatttggcaattttttcactgaattcctcatt
tttgatgccattttactgggtatgttttattaacgaccgttcaagagtta
aatatctcaatcattttccaagtttgttaaaatatctttcatgccttgat
tgaagaaaaaattttgtgattttttttNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtgtgatttttttttgacttttgaaaaaaatgttttgaa
tttttttgcttccggaatttttaaaaacctaaaattttaagtgaaaaatt
gaaaaatgtgctcagttagtacaccatatcctaccaaaatcgacaattgt
gggcttaggcaccacatatgttgcagttagtccactggtggagtaacNat
tttgggcttaggcaccacccatgttgcagttagtccactggtggagtaac
tgttttcccaaattttggtttatataccaccacagtagtaattgtcatag
tgtttatataataactgcatgaccccccccctgattaTGACAAAATTACT
TGACAATAGAAAAACGTACCTTTGATCAGATACACTTTTCTTTTCCCACG
ACAACATGTCACAAGTTTCAAAATGGGGTGGTTTCCATAAGGATGCGTAC
TTATTTCTTTTTGCCGCCCCTGTCTCTCCAGGGTGGCTGAAGGGTGGTGA
ATATTTTACCGAGTGGATGGGGAAACCAGGCTCATATCTATTAAAACCAA
TCATATTTTGGACTAATGACATAATCGGGActcattcttttgaaaattct
aaataacaaGATGTCAGATTTTGAAGcggacatgttcataaaacaTAGGG
CGAAAGTTTACACAttgaaaaatggcttttttacatttttatcaataagt
ATTGCAGTAATCTTgctgaaaattggtgaaaatggCGATAATGATGTAAC
AAAAAGGACtgcatcaaaaaatttcaaaaatatactccTCAAACaaggaa
aattataaaattgtaaCTTTGTTactaaattatcaattattaaGGTTCTA
ATGGATTATTTACAATTCTGTAAAaacaaagataattttgaagCATTGGT
AATGTGGCAGTAGCTTTAGGCAAGTAATGTAACACCCTTCCTGAAAAGAT
ATGGGATCAAAAAGTAACTGTGACTTATTTATCAggaatttatttgatta
ttggAAAATAAACCAATGTTTCAGTTTTATCAATGAATCGACTTGCAATT
TAAACTTATTGCAATCAAGTAGACCCAAACCATTTCCTTGAAATTAGtga
taaaaatgtacaaaattaaaatttcaaactgtTACAGTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCagttgttacatttttatcatttttcttgc
ctgacTTTGGGAGCTAATATCTTAAGCCTCGCTTATTATTTAGAAATCTA
ACCTGGACAGTTACAAAATATTATCTATTTACAATTGAAAAACCAAAATC
TTTTGTCTTGAAAAGAATGAGAGATAAATcagtaacaaattaaaaatcta
tGGTGCAAAGTGTAAACTTTCGTCCTATGTTTTATTTATGAACATGTCCA
AGCGTGTAAAAGTGAGGTCATTTGGGAAACGCAATTCATGGTAATTATAA
TAATCTTTCCTCGATTAATTACATCATTacaacatttggcgagttcctgt
acgcggccgcaatcaataAAATCATAACAATCACTCATTAAAAAACAGCG
TTTGTGTCTCtttgcactttttttagcctagacaatgtagcaaacatagt
aagtgtaagaacactgtgcttttaattggctgaaatttttttttgcatca
gaaaaactttttcaaactttcagcaatgattgaccaaactgttacaataa
aaaatatccagcgcattttttatcttcttaccttcttcatcttcattgaa
gcactcaaggtttactgaagttaagcacacaagatattcttataattatt
caTAAGCACTGAAACACCGTTTGTTGTGCGCTGCGGCAGAAGTAGTTGAC
CACAGAGTTAAGATCTACAAACTAATAGAACTCTATTTGAACTCTTAACG
GATTAATCAAACAATATATTGTTATTAAACAGTAATTTCCTTAAAGTTCA
ATGAATTTAGATTGTTCGATTACAAAAATAAGTTTAATAACATTTAGTTG
ACATCGTCTGGAAAAAAGCTTCCCTAATTTTccaatttcagaaaaaagat
tCCCGAAATTAACGGGGTTAAGATTTCGAatttcacttggaaatttttac
tTGGAAATTTTTACTACTCTCGCGTAGTTCGAGTGTCATCACTATGCATC
ATGGTATCTGTGTCTCGCGTGCATTGAACCAGCCTGGACAGCACTAAGCA
TATTCTCTATTCTTTTTCTAATAGTTGTTTTGCAGAACGTTTTCCAAAAA
TCAAGCTGaccaaaatggcaaaaaaatgacaatgacttgtcaagattttt
taacatcttcagggatcgaattagcgtatcgcatttcgcaattcgcgatg
cgtttttggattacttacaagctaaaaattgaaaattgatccattttagg
ataCAAAATCATggttatcaaaaaattgcgatgcactttctatcccttat
ttcgatgcctgATCTTTTTGTTTGGCAAGCAACCAatcttaaataaaaac
aagaagccggagcggcgtgaaggtccagctgacgtggcaatataaccgaa
tgtcgttcgtaccNcggcgtgaaggtccagctaaACGTGGCAatataacc
gaatgtcgttcgtaccgggttccttaagtgacgcaaaaaaatttccttcc
catcctccactctaagcttctattctttgacactttctttgtatcGCTAA
GTTTTGACAGTTTTTGATGCATTccccgaaatttcgaaacttttgacgct
gatgggattcgaacccactatatacaaagcacctatgattagaaggccag
cgccttaaccattcggccatcgagtcacagctccattaaggagttcaaag
ttgcttacaaacatggtatttactccaaactctacccgggggctaaaacc
ctaaccaggggttaactcccatccccaaccctagccctaaccctacctga
aacaaccctttaatctaaccgggaaatttgactctactaccaattcaatc
caaaacatatgtcaaacatcgcgcgggtaggcggggcaaaaattctagat
cggcggtaGGTTTAGCCTGgattgttaatttattgcgcgcacaggccccg
acaaagacaaaatcttttcgatcagttgctttttaaaggtccattctgct
gcgcgctggaccaaatATTTTGGCAAGGAATAGACAAGCTTTTCATATAG
CCAgatagaattaaaaaaagggcACTTTCTTGTGTTTTCTGCTAAAAAGA
CTGTTTTTACCAACATTTAAGTGACttcaggaggggcagcgtccgatgaC
CGGACACTAAAAGGGCTTGAAAAATTACCTGCCCTTGTCGAATCTTCCTA
GAAATATAATGGAAAAGCTAATTTATAGAAATTGCTGTCCCATGAATTTT
TTCTGCTGCGtgatcagggggggggtcggtagtaaaatcccagacatata
tgagtagtaaaaggatttttaccaatttttacatacctccacccagactc
ttggaagaggtattttactaccctagtagtaaaagttttttgggacaatt
ttgtcataaagaccacctattttttggttgcttttcggacttcATAGGAT
GTTGGAAATTTATTTCTCACATGACAAGAAGTTCCGACTTCACATTCTTA
AAAACAAAATGGTGAAGCACCTTTTTTATGTAAATGGATTATGGAAAGAA
TTCATTTAATTTGACGGctttaattatttctttttctttttctttttttc
atggaaaaaatgTGTTGAAAAGGCAATTTCTTTGCttaaggttttttttc
tttgtgaattttcatcttcattttttatttaaagattGTATATTTCATCA
ATTATCTTGGTTTTTTCAGGGTTAATTCTAGAACTATTAGGGAGTAGAGG
AATCGTTACAGATCTTTAAAAGGTTTGCTAATTCTTAATAATAGTGAATA
GTTTGGACATTGGTAATAACTCATTTCTGCGATCGACCACTGAAACACCC
ATTTCCAAATCCGGACGGCTTATAATTTGTTTATATATTGGGGCAATGGG
CAGTTTGGCAGCAGGGGCTCTCTGATTCAATAAAAAATCAGCGTCAacca
ttttgaagaaaaacaaaaaaagttttaaaaagggTGCGCTAACAGTGAAA
ATTCGTTTGTCATGGTctctattctcaacttcagttgagttagaatctga
gaatgtctgtctgtgtgcGTTTCTGTGTGTCTGTgacaaaaactttgggg
caggctggagacttcaaaaatggtctgatttggctgaaattttgcacact
tgttccttgggtgaatatctgggggatatttttcatttttttgaaaatta
agggtgtggtcacgagtttttagcctaaacgaggctaaaattttggggca
gcctggatggagacttcaaaaattgtttgatttggctgaaattttgcaca
cttgttccttgggtgaatatcttggggtctacaattgggcttatgaataa
tttgaaaccactgaagttgagcccagtgtgTTGCGCACGTTTGACTATTC
AAATTAGAGTAGTGAAGTACAAGGGGCAGTGTCTAAACTTATTTTGTTGA
GAAACAGTTAATACTGCATAATAAAAAGGTGGTGTAAAAATGTTGCAGGG
CAAGTGAAATTAGTGCAGTGTACTAAACAGGTAGTATCAAAACTTAGTAC
AGTGTACAAAAAAGGTGCAAAAGGGAAGTTAAAGGTGatacgtaatagtt
atcggaaaGTTGCGAGTgcagggggggcacgcagttactacaagacatga
tgtgtagtaagtgctttttcaacactttttttcaggaccaccaccctttg
cagttactacaccttggtagtaactgttttcagaaaagacttgcaggtac
cacccctgtttttgaggaatagtgtggtcgtgttacaaaagtacaggctg
tttgtaggaaaaaaataatatatagctgaaactttctccagaccttctct
ataggatgcttatgcctcaaGAAAacatcccctaaaatcccactggtgga
acatcccttgtttgggcaatttcttttttccccaggcaaaaccctaaggt
caaaaatttttgaaaatttcaaactcttttcGAGACaacatcatgtatac
cattcgaaagctctcaaaaaactatatagaagacttttagacgggtatag
ccgatttcattacctaactcgaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttttcctgag
gcataagcatcctatagagaaggtctggagaaagtttcagctatatatta
tttttttcctgtaaattatgctaaacgaccccactatgatatcatcaaaa
acatgctcaaaATTTCCgtaaattgcgattatttttcaacctaaagccat
ttttgtgctagattttcttttaatttacttggttaacagctgttgagaac
attttaatgatcattaggcaattatttttttattttctggtttacggaat
cgccaacgtttttttttgcaaaaataaaataaaaaataaaattggatttt
acagtattttatttatttatactCTTCCGACCTTGTACTGAACAGCCATA
AAAAGGAAACTTtataaaaattacattttataaaagcaagAAGGGCAAGT
AAAAGGGTCAGTGTCCAGGCCTTTAATAACTTAAACACAATTTCCCTACT
AAAAACGTTCTTTAATGTATGTAAGTTttctcaaaacatatttttttaat
tttttacaacattaaagtttgaaaagagcaattttatttttatttttttt
ccatcctccggtCCAAAAGATCATCTCCAAATGTAcgtaaaccagaaaaa
aaagaaagtaattgccttagggaaagcataatttcaaagttgggtctgag
aaaaatttcaatttttttttcgtccatttataacaaaaatatttttttta
acaaagaattttttaacaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcccccccccc
cctggcaaGTAccatatgaaaaatattttacgagttccgagatttttctg
TACAATATTTTCAGAGCCTTTAGGcaaggaaaatatacggaaaatccgga
acgagtgaaatattttcatattgtacgagcaaatgtctgataactggttt
atcagtgacccaaaaaatacacttttgtgttggaaaaaagcgctgggcag
ttttgtagcaaagtgacgttagattgctgttACCGCTACAATgtaacaac
atcttttcgttaATTTGTATTTTGTAGATGTAAAATAcgagatatattgt
actctttttgaccaatcagattgcagatattttctGGAATGTCCAATAAC
AACGATACCAAAACTCTGGTTGTTGAAATAAGTGAGTACTGTCccggggg
cactgaccttgactgCACTGACCTTGACTGCCAATGGGGACATGCTGctt
gagtttgaaaaatgggCACTGTTAGATAAAAAAATTAGGTAAATTTGGAC
CCTTTCAGaacaaataattgaaaattttccaatttttaccctgaaaaaga
ccaaaaatttagaaattttccaaCTCAGTCCAACTTTAATTTTCTAACTT
CCTGGAgaatggaccctgtcagaaacactttttgaaaattaataattttG
TGACCCTGTCAGATCTTTTCAGAACCAACTTTGCCTCCCcctagtacagt
gtactaaaagatGATATGAAAGCTCTGACCATGGAAAGAATTTGAACAGT
GTACTAAAAATTCTGGTTGTCTAATAATTTGGAAGAAATCAGTACCCCCT
CTTCAATTTCGTCAAGAAATATCAAAGGCTGACTAAAGCATTCTTGGTGT
TTTGCTTGGGAGATCTGGGGAAATGTTTAACTTCAGTTGAAAAGaaaatc
tgacaatgtctgtctgtgtgtgtgtgtctgtctgtctgtcacaaaaactt
tagggcagcctggagacttcaaaaatgcttggatttggctgaaatttggc
acacttgttccttgggtgaatatctgggggtgtttttttcattttttgaa
aattttgatttttggggcctggggacgagtttttcgccaaaacgaggcta
aaaatttggggcaggctggagacttcaaaaatggtccgattgggctgaaa
tttggcacacttgctccttgggtgaatatctgggggtgtttttttcattt
ttcaaaatttttgatttttggggcctggggacgagttttcgccaaaacga
ggctaaaactttggggcagcctggagacttcaaaaattgttcgatttggc
tgaaatttcgcacacttgttccttgggtgaatatctgggggtgttttttt
catttttcaaaattcctgatttttggggcctggggacaagtttttcgcca
aaacgaggctaaaattttggggcagcctggagacttcaaaaattgttcga
tctggctgaaattctgcacacttgttccttgggtgaatatctggggggtt
tttttcatttttcaaaaattttgatttttggggcctggggacgagttttt
cgccaaaacgaggctaaaattttggggcagcctggagacttcaaaaattg
ttcgatctggctgaaattttgcacacttgttccttgggtgaatatctggg
gttgctttttgcatttttcaaaaatttagatttttggggccaggggacga
gttttttgccaaaacgaggctaaagctttgaagcagcctacagccctcca
aaatggtcggatttggttgaaatttggcacaattgttcattgggtaaata
tctgggggtctacaattgggcctatgaataatttgaagccactgaagttg
agcccagtgcgtggcgcacgttcgactatattaagcagttattggacaaa
gtcgaatccaatatttttcatattggatgagactgcgtccaaataaatcG
TTTATTATTCGTTCAtagctaaaatatttctcgttttcaaacataattcc
aatttataagctCGTAAATCTGCTTTCTTGGtagtttttcattcaaaagt
cttatttttattttgtgacgtaacgtcaaaaagaagatgctcaattgtca
ttgaactcgttgtgtgacgtcaatttttgaaatatgtagcctccatggaa
gctacatactcgaaaatattggacagcaaagaagccaatcaaatgtcgct
atttacacGCGTCGAATAATAAAACAGTATAGGTTCATCACAAGCTTTGA
ACActgattttggtaattttacaaatgtttgatttctattttttgCAAAG
AGAATGAAAGATATAGCAAGTTGTCACCTCGTTTTATCTCAGAACcatct
gaagaaaaaagttcatTGTCATTAGTGTCTGGCTGAGTGCGGTTGATATG
GATAGCTGTATCAGTTCTATTACAAACAACTTAGTGTTTCATATTTGTCA
CAGATATTCACCCGATGGTTTTAGGGTTTCTGTTTTAACGTGTTCAATTC
TATGCTCAATATTCATTTTTCTGTAGATTAACCAGGTAGATCCattaaaa
gtatcacttgtcaattttgaaatttctgattAATTCAGctaattcttttt
taattagatcaaaatcattttttcccAAAGTATTTTTCGACTTCATTTCG
AGAGCAGCAGTTCAGAATATGGACTAATATGTAATTTCGTCAATGACAAT
TCTAACACTGATCctgccagggggggggggtcggtagaaaaatctcagac
atatatgagtagtatgTGTTGTtgacttaaattcattttcgaTAATCGTT
GAATTCAAATGTAATTCTCACAGCAATTTGATTCATGTAGAACTcacaat
tattgttattttttctcaACTTAGTATATTATTATACTTATGGTTATGAA
TTCTGAAACATAAATGTATCACAGTTATATAAGTTGAAACAAGATTTCCC
TACTAAAAAACAGGTGATTCCCTGGGGTTCGTTTTCGATAATTCTATAAA
TTATATAATGTTGAAGCAACTCTGAGAAACTCTTTGTCTGTTCTGGATGA
TTGAATAAGCTTTTAACAAAGGGTGAAAAGTTTGGAAACAAAGAACATTG
AGACAAAGGGATTGCGATTCCTTTTAACATAAGTGGTGTCTACTACCACA
gagatttttagttttttatcatttcccTGTTGTGAAGGATGTTCTTCTTG
GAATActacttgaaaataaaaattgttaaGATTGAGGTCTTTTGATGTGA
TCTTCTGAACATGCAggtactttttctttttatgcaGGGTATATGTTTTT
TTGGGGGGCGGTGTGAAATCAATACGAGGATGATTTTCTTTTCTGGGAAT
GGAATATTGCAATTTTGAACTGATACCCTCGCTTGCTTCCGACTAGGGCC
ttcgtttttctttaaaaatgcaATAAATTGTATGTCTGGCAATTTAAAAC
CCACACCTTATTATCTATTTTGTAGGCTGCACGATTAGTGGTTGGTTCAA
GCTTAAGAGGTGTGATTGCCTCACCATTACTTTCTACACAAAGAAATTTC
TCTAACACAGAACACGCAACGAGATCACCTGAAGATCAGTACGAGGTATG
AATGtgtcttaaaaagtttttaaaacaaTATCTGTAAGTACAGTATGCGA
GTATTCTTCTGGTTGCTCAGTGATAATACTTAATATGCGAAATTTATTTG
TATCTGATGCCGTAGAAATTGTTTTTACCAGATTCAACCAGAAGATTTAA
TTATACGCACTTTACTTGCATCTTCAACGCCGTTGATCGTTAGATTTTGC
TTCTCATTCAGTAAtgtttgtttttgatgttttaaggATGTGGCCCAATT
ATTCAGTGATGTCAAACTAAAAGTACGAGGCAGTGATGAAGCTGTTCTTG
ATAGTTACACACAATTCGTTCAACGAGCAGCAACTACTTTGAACCTCGAT
ATATCTGGAAAGTAAgtcaaaaacgttgtgtttcatCACCCTCTTGAGCA
TTGTTACTTCTCGAAAcggctttttaaaaagagttcaATCGAGAAAGGCG
AGGGAAAGTTTCATTGACGGTTACGAGTTCATTCACTAAACCGATATAGT
TCTTATTTCCAGTTCAGATATATTTACATTGACGGGCTCTTATGAAACAG
TTTCTAATGATAAAATTCGTGCATTCCAGGTCATAGATGCTTTcatattt
tcaacaaaagactTACGTCAAAGCTTAGCCAGCTTATTTTGACTTTCATG
GTGTTCACAAGGTGTTATCAAAATAAGTTCACAGTAGGGAAGGAACGGAA
ATGAAACTCTTacataattataaattttttctttttttttgtaggATTGT
TATTCCGATGCACATTGAGAAGAGAACGCTCTTGAAATCGCCACACGTTT
ACAAGACACACCGATATCAATATGAGTTACGTACGCATGCTCGCATGTTG
CAGGTCAGTCTTCTCCCCTTTtgtatttaaaaatgttttacccGCTTTTC
CAAACCATGATCGAAATAGTACTCTACCTTATTTCCTAGATATATCATAT
AAAATGTCCCTTGGGTCGATCAGTGAAATTTTCACGGCTAGTCactttaa
aaaatatcattAGTCGATCTGTTGGAATGTCAAAAGTGCAGAAATCTTGT
GAAATCACTATCTGTAGTCAAAAGCTTTCTTTAACGACATACTCATTTAG
CATTATTCTCAATCCATTTCAGCTACGACAAATGACTGGCAATACCGCTG
ATATCTTCTTGGAGTACATTCAACGAAACCTTCCTGAAGGCGTCAGCATG
AGCGTTGAAGCAACAGAACTTGAATCGATGCCTGACTACTTAACAAGGGC
CGCTATGGAAAATTCATCCTAGGAAAAACGACATAatattacatttttat
caaaaatttagaatattGAAAACTAGACAAAAACTAaccattaaaaatat
ttttgagtttAACAGCGCGGCTTTTATTATTTAGTTGAAACAGAATATTG
TAAATTTTATGAATAGTAATAAATATAAGAACACTGTACAGTTTTTTTAA
CATCGAAACTGGGATTCCTATTTCTCTCGTCtggtttttcttttgttctt
attttaattACTATTTCTTTGCTACTGTGATATATATTTCGCTCGCCTTA
TCAGCTTAAGAAGTTGCGTAATACGGCGTCTAGCTAAAGGTGATTCCTTG
ACCGCGATCGAAAGTGAAATTCTGTTATTTATATGAAATTCTATAGCAGT
TGAAatagaatcaattttaaaccGAAGCTTAtcatatttaaaaaatcttt
gtgacctgtctcaaatatttttgcATTAAATTTTCTAACTTGACAAACCG
GTTTTTTGAACCGCC Coding sequence (CDS) from alignment at sc0000097:497563..511777+ >TCONS_00009593 ID=TCONS_00009593|Name=TCONS_00009593|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0000097:497563..511777+ (Clytia hemisphaerica)
ATGGCTTTTCAATGTCGATGTGGAATTCAAGCTGTAAAGAATGCGAGCAA
GGCTGCACGATTAGTGGTTGGTTCAAGCTTAAGAGGTGTGATTGCCTCAC
CATTACTTTCTACACAAAGAAATTTCTCTAACACAGAACACGCAACGAGA
TCACCTGAAGATCAGTACGAGgATGTGGCCCAATTATTCAGTGATGTCAA
ACTAAAAGTACGAGGCAGTGATGAAGCTGTTCTTGATAGTTACACACAAT
TCGTTCAACGAGCAGCAACTACTTTGAACCTCGATATATCTGGAAAgATT
GTTATTCCGATGCACATTGAGAAGAGAACGCTCTTGAAATCGCCACACGT
TTACAAGACACACCGATATCAATATGAGTTACGTACGCATGCTCGCATGT
TGCAGCTACGACAAATGACTGGCAATACCGCTGATATCTTCTTGGAGTAC
ATTCAACGAAACCTTCCTGAAGGCGTCAGCATGAGCGTTGAAGCAACAGA
ACTTGAATCGATGCCTGACTACTTAACAAGGGCCGCTATGGAAAATTCAT
CCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009593-exon-sc0000097-1491911889:497563..497750 | TCONS_00009593-exon-sc0000097-1491911889:497563..497750 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1510915933:497563..497750 | TCONS_00009593-exon-sc0000097-1510915933:497563..497750 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1575043694:497563..497750 | TCONS_00009593-exon-sc0000097-1575043694:497563..497750 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1491911889:509888..510007 | TCONS_00009593-exon-sc0000097-1491911889:509888..510007 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1510915933:509888..510007 | TCONS_00009593-exon-sc0000097-1510915933:509888..510007 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1575043694:509888..510007 | TCONS_00009593-exon-sc0000097-1575043694:509888..510007 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1491911889:510249..510373 | TCONS_00009593-exon-sc0000097-1491911889:510249..510373 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1510915933:510249..510373 | TCONS_00009593-exon-sc0000097-1510915933:510249..510373 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1575043694:510249..510373 | TCONS_00009593-exon-sc0000097-1575043694:510249..510373 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1491911889:510757..510865 | TCONS_00009593-exon-sc0000097-1491911889:510757..510865 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1510915933:510757..510865 | TCONS_00009593-exon-sc0000097-1510915933:510757..510865 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1575043694:510757..510865 | TCONS_00009593-exon-sc0000097-1575043694:510757..510865 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1491911889:511135..511777 | TCONS_00009593-exon-sc0000097-1491911889:511135..511777 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1510915933:511135..511777 | TCONS_00009593-exon-sc0000097-1510915933:511135..511777 | Clytia hemisphaerica | exon |
| TCONS_00009593-exon-sc0000097-1575043694:511135..511777 | TCONS_00009593-exon-sc0000097-1575043694:511135..511777 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:497563..511777 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005840 |
ribosome |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00009593 vs. Swiss-Prot (Human)
Match: RT10 (28S ribosomal protein S10, mitochondrial OS=Homo sapiens GN=MRPS10 PE=1 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 1.958e-31 Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 3
Query: 321 LFSDVKLKVRGSDEAVLDSYTQFVQRAATTLNLDISGKIVIPMHIEKRTLLKSPHVYKTHRYQYELRTHARMLQLRQMTGNTADIFLEYIQRNLPEGVSMSVEATELESMPDYLTRAAMENSS*EK 698
L+ + + V+G D+AVLDSY F AA L + I P IE+ TLL+S H+YK HR QYE+RT R L+L +TG+TAD++LEYIQRNLPEGV+M V T+LE +P+++ E S EK
Sbjct: 72 LYKRLSVLVKGHDKAVLDSYEYFAVLAAKELGISIKVH-EPPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTADVYLEYIQRNLPEGVAMEVTKTQLEQLPEHIKEPIWETLSEEK 196
The following BLAST results are available for this feature:
|
