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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009600 ID=TCONS_00009600|Name=TCONS_00009600|organism=Clytia hemisphaerica|type=transcript|length=1966bp
CTTACCATATTCCAAGCTTGCTATTTGAATGATTCTTATACAGTATATAT
TGATAAAGATCTTAAGAGATGGTATtacaaaatgacttattttgaaacaa
aagttttttttaaagcagAGTATAAATTCCTGTATTTCTGTAAATTCAGT
TGTAactatttgaaagttttttaaaaattgatttcagCAATACATattca
aaaatgaaagagaATTTGCTTCAAAAATACAAGGGGGCGATCATCTTCCT
GTTTGTCATCCTATTTATAACAATCTTGCTGGTCACACTATACCTTATGT
TAAAGAAAGGcttctgttgttgttgttgcaacAAAGAGAAAGAGGACGAA
GAGAGTCTTTACACTGACCTCGAGCATGATGAAGAAGACGATGAGATGGA
GGGTCATATCCCTCCTCCAAAAGGTGAACTTCTCCACAGCGGTGAACATC
ACTTAGAACCCGAAGAACGTGCCGTAGAGGAGCAGGAACATCACATTCCG
GAGATCATCGTCACCGAAGGTCATTTCGTCCCTGAGAAGAAGAGCAAGAA
AAAACAACTGTCCGGTATGTTGAAACGAATGCGACCGGGCAAAGGAAAAG
TCCGATTTAGCCCGTCTAGTGAACAGATCAGCATGATAAGTTCAGAAGGT
AGCACCATTACCAGCGATTACGGATCGACCACGAATTCCTTACCTATTCA
CAGATCAGATTCTATGGAGAGTTTCATGTCGGCTGTTTCGGCCGCTACAA
CGAACAATATCGATGAGTTTGGAGATGAACTTTCTCCGAGTCGTTTGCAA
GTTTTTTTACATTATGATCCGAAATTATGGACTTTGACAGTAGGTGTCAA
GCAAGCTGATTGCTTAGTATCGACCACAGGTAGTGCCATGTATTGGCAAG
CACATGTAACAATATTACCCTTTAAAAAACATAGATTCAAAACGAAGTAT
AAGTCGACATCGACACCAATTTTTAATCAGAACTATGAAGTAGAAAACAT
CGCGCAACAAGCCCTCTCACAGCTTTCCGTTCGTTATCGGATCTACGGCC
GTCCAGGGCGAGGTGGGCGTAAAAAGCTGGCGGGAGAAACAGAAGTTGAA
CTTTCACATATAACCCAGATGGAGGATATGATAATAAAGGACTGGCGTGT
TTTGAGGCGTAAAGGTGGACCTTTCATCCGCCATGAAAGTGAAGTTTAGA
TGTTTAttttaaattcttatttttgggAGGGCTATAGTggtatatatttt
attttctagttttatttttctcgtgttgttttttattaatgacatttttt
gAAGGCTTAGTGTAAAGGGCTCTGTCCAGAGAGGAACCAGCTTCTAATTT
GCAACGAAAAATTTTTCTATTCAGATATATTAATGATTACTCAAACTGAC
TCGGTGAACtctgaagaaaaattaaaaggagCTGCATAAAGATGAATCTc
cctcttttttataaaaattactcATTTTTAATGGGTTATTCACTGTTATG
TTCtattgtattttaatttttttacattttaatttaCAACTTGGGGTATT
TTAAGTGAAAAGTACATGGCAAATATGGAGAGATCACTTTACTTAGTCAG
AGCCCGGAGAACTGGCATAATTTTATAGTAAAGACAGAGACTTAAGGGGA
AGCACAATTTTgacgttttgatttttgaattcagACTTTATCTTTTGTTC
TCTGATCAGAGACTAGAACAATTATATCATTCTATCAAAGTTTCCAAACC
TGAAGCTTTTACCTGTCGATGTAGAATAATTGGTAGTAGTATTCTTGTTA
GATTTTTTAGTAGCTAAATTAagggagatattttcgtgtttttctaacca
acattttctttttttaattcatttttataTGTCATCATCCATACTTGTAA
AAATAAACCATTAATAGTCTACTACGATAATTACACACTACATATGCAGC
AATCgtaattcaaaaa Run BLAST on NCBI transcript from alignment at sc0000097:531062..537323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009600 ID=TCONS_00009600|Name=TCONS_00009600|organism=Clytia hemisphaerica|type=transcript|length=6262bp|location=Sequence derived from alignment at sc0000097:531062..537323+ (Clytia hemisphaerica)
CTTACCATATTCCAAGCTTGCTATTTGAATGATTCTTATACAGTATATAT
TGATAAAGATCTTAAGAGATGGTATtacaaaatgacttattttgaaacaa
aagttttttttaaagcagAGTATAAATTCCTGTATTTCTGTAAATTCAGT
TGTAactatttgaaagttttttaaaaattgatttcagCAATACATattca
aaaatgaaagagagtaagtatataatattatatttttcagtctttttttt
tgttttttttgaggATTGGATTGAATGACCATTTAATCATAACTTGctat
tgcaatttttttctcagCAAGGTTTCTTCACGCTTAAGTTAAGGCAGAAT
ATTGCTATACCCTGTATTTATGCTTTAAAGTCATCATCTGCTATATGTGA
AACTTTTTCTAATCCATCTATctatttatctatctatctatctatttatc
tatttattttttaaagtatcATAAGATGCAATCTCATACTCGCCAAAAAG
GCCCATACTGTAAaacatactctcgggtacctaatagccggggggtttgg
aataagcgggggggggttgggaaaaatctcaaaacttaataggcgggggg
ttggaataaaaatgtcctgggtggaaaattttcgaaaaattaattagcgg
gaggacggctattaggtacccgagagtatttgTGACCCTCTAAGCATTGT
CAATTTACCCTTTTAATCTAATAATATGTTATTCCAATAAGGGAATTCTT
GATAAACATGTTTAACAATTAAATATAACTGCATGCCCCCTTTAAAGTTG
TGAAAATATTCTGGGAAgttctttaaacttttaaaatcagcaaatcttGT
GAGAAAAGTAATTCCAACAAAGTACCTAGTCTGTACTCTGTTTCTATCCT
CCCTTATGAGCTTTATGtgttaaaaaactttcaaaggcCTTTGAACTTAT
GATGAAATACTTTTTCATTGTGTTTAGTTTAGAAAACAAAATACCGTGTT
GGTCTAAATAAGATATTGTTCctggaaaaagaaagaaaacttcATTTCTG
TCTTTACCAATATCCCTTATTATTAAAAAACTTATTTTGTTAATGagatc
tgaaagaaaaattaaaataaagccCAAAACACTGCCCGAACTGTGTATTT
CCAGAAAATAGTTCATAGTGAGCACAGTAGACTTCATTTTCTTCATGTAA
CTTTCTGAGAATATTGGATATTAAAAAGCTAAAATTATTTTACTCACTAA
GTTCTTGAGTTCTTGCTTGTCAAAACTCCTAAAAAAACTAAATAGTATTA
AAAATTGTATTCCTCTATAAGCTTTTTAAAATATCATCTTTCTTCCAAAC
GCCTTTCTTCAAGTCCAATAAAAAAGGGTTTATTTCTCATCATATCCTAT
AATATGTATAATATGATCCAAGTATTGACATCCTACCTCCTTGTTATAAC
TACAGTAGATAATTAATAAACAAAACTCCACCTTGAATTGAGGTAAAGAA
TGATAATTTCAATAATCATGATGATAAACTGATTATGAGACCACTCTAAA
AACATGAGCATGAGTCTGTTTGAGATGTCTAGTCTTATTGAATAATCATC
AATGTCATAAACagtatataaaaacaaaaagattatgtGATAGTTTCTAT
TATTACATTTTGAACTGTCTTCCCTTTTAGAATCAGTGTTTGAAACTAGA
ATGACACTGTTACTTTAGACAATATGTCTTGAAACTATCTCTCTAAGATG
AAAATGTTACTTTTGAATATAGTTTtttaaaacaaagatttagtaTAAAG
ATTTGATTTGTGACTTTGTTGTTGAATGCATTTGAAAAGATTGACCTATT
TACATAGGGTAGTTGAAAGAAATCAATTAAATATTAGTAACATTTTATTT
CACTTGAAAGATTAACATTGACAATCTTAAGGAAACTaacttttttatct
tctttctCCATGCTCTGGCAACctctttatcaaataaatttgattCAACA
TTAACAGTTGATAAGAAATTCTGATATTATAACTCAACTAGCCCAATCAT
TTCTCTACGAATACTTCTCTCTATCAAGCTACTAAAGTTAATGGTCCCAC
TCCTAAGAGCCAACTATTTGCCAAACGAATTTGCTGTCATAGCAACATAG
CataaattacctatttcatTATATTTTGAATAGCACTCAACAATTAGTTT
CTCTAACAACTGTATAGCAACGAAATGAGGTGTGTTGCACTCTAATGTCT
CATGTCAgcttttggtttgttttgtagTAGTTGTTGTGAGTAAAAATAGT
TTGAGTCCTAAAGTAAACATTGAACCTTTAGTAATATGCAACAGCTTTTT
TTCATGACAGTGTAGTCTAGTAGGatggttttgaaaattatataaaCGTT
GAGGGAGTTGTGTTTTGATTTACTTGGTGTCACTCAAATAATGTTAGATT
CGTATTATCATAGTTTACATTATGATATAATAGTGTGTTCTCTCCTGATG
TGTTTTGATTCTAATGACTGATATACCAGGGCTTTTATTGTCACTCTTTC
TTACACTCTGAACTCAAAATATTATCTGAAAGGGATCCCTGTagtatttt
caagtattatTATATACTGTATTTTATTATAACACTTGAATTTTACTTGA
ATTCTTTGTGAAGACtcaatttatcattttatagTGTAAAGAAAGTTATT
ATTGATGGATTATCTTAACTTGGTAGGGAGCTAACACAACATAGTTAGAT
GAAACGAGTTGTTTTTCGGGTTTTAGGCATGGCTTATTTCTCAAGTCCAT
GCTAAAACTCTAGATTAAAATCATCTTATACTGATTGCAAGTTGTTCATA
GAAGTCTTAGATTTTTGTAACACATAGTTAGAAGGATTTCGGTTGCTTTA
AAAACTGATACCCAGAACCGATTTTACCCAGGTACCCTCTGGTTTACAAA
GAGTTCTTGAGTTTATGGCAGTATTGAACAGCGcactattttcatttttt
gaacaacatagatattttttatttgtcttTTAATCAAAATCCTAGACTGC
AAAAAAACACAACAGTGGACTTACATTCAAATTATAATAGGGAAAactaa
agaaaagaaataattttatataattttctCACTCTGTAGGTATCCAATTT
CATTATCCCCAGATGGGATGAAGTTTTAGGGTTTAGGTCAACTTTTCTAT
TGATAAAGTcatctttattttgtttttaattcaattttatcAACACTTTT
GTGACCTATGTTGCAATCAAGTTTGATAAACTTTGGATGGGCTTAGATTA
CTTTTGGCGATGAATTTCGAAATTGTCATCACTAACGTTAATTTTCTCTA
CAGAGCATAACGTTTACTGGCAACCTTAACAACCTAAATCTACTCAAGTT
ACTTTTCTCACTTCGAGATTTACCTTTTTGACCTTTACATAAAACTATGG
TTCAAATGCCTTCCCATCAGAAAAATGTCTTGCTCGGGGTAAATACTTGT
ATATTAGTGTTTCTTTCTGttgcaaaatgaaaattatagtGGAGAAAGCA
ATTGGTAGGTCTTACTTTTTGATGAGAAGTTCCAATTTAGAATTGTTtga
ttttgtatatattttcctgaaagaaattaattgttctttttttcttcagc
cTTGACAAGTTTTGTTAATTTATATGGGTCTTCTTTCAGAAAAGGATTTC
GAAATCTCGAACTCTACTCATCTTAAGATCTAGCCACgttgaaagttttc
tttttgtcaAAATTGTTCTCGAATACTCTCACGTCAAAATAAAGTTTTCC
AGTTGGCGATTTCCTGGGACAATACTACCAAATTCTACAAAAAATCGGAA
TTGGAAATCTACCAGAATCTACTATTTTAGTTTTCTCAGATTTTACAAGC
ACTTTCGTTATAAGGAACTTTTAGAATTGACTTTCTAAGGGCCTCTTGCT
CCACCTTCTTGCTCCCTTCAGTGCTCCGTAGAAATTTTTCCATAACTTCA
CCAGCTTTGAAGAAAAACAGTTATGAATTCCAAAGGAATCGTATAGTGAG
AGAATAAAATTAAAACGTATATACTACTTGGTCGGGTCCTCTCTTGAACT
TGTGAAAATTCGAAATTCTGTTTTGCTGTTATTCAGACATCTAATTGTAG
TGGGCATTTGGTATTTTGTTTAATGAAAGTGAGTTTCTCTGAACGgaagg
atttttttttggaactaTTCGTTTGGCTGGTCTATGTTAGTCTAAAGGAA
AAAAAAGCTCGAGCTAAATTTCGTATTTTATCATAAAATTTATGCAGCTG
ACCTCAATACTGTTATATATCTTTATATATCTATTGtagaaaaaaaagtt
ctttCGAACTTAAGTATGACAGTTTAATTTCAATATACAGTGTTGCTCCT
TTCCAAATCAGTGGAATGGGTACGtcaactgtttttctttgagtCAACAT
ACAACATATTCAACATTATACACTGTAACACTGATGTCTTTTTTCTCTCT
CATTTTCAGATTTGCTTCAAAAATACAAGGGGGCGATCATCTTCCTGTTT
GTCATCCTATTTATAACAATCTTGCTGGTCACACTATACCTTATGTTAAA
GAAAGGcttctgttgttgttgttgcaacAAAGAGAAAGAGGACGAAGAGA
GTCTTTACACTGACCTCGAGCATGATGAAGAAGACGATGAGATGGAGGGT
CATATCCCTCCTCCAAAAGGTGAACTTCTCCACAGCGGTGAACATCACTT
AGAACCCGAAGAACGTGCCGTAGAGGAGCAGGAACATCACATTCCGGAGA
TCATCGTCACCGAAGGTCATTTCGTCCCTGAGAAGAAGAGCAAGAAAAAA
CAACTGTCCGGTATGTTGAAACGAATGCGACCGGGCAAAGGAAAAGTCCG
ATTTAGCCCGTCTAGTGAACAGATCAGCATGATAAGTTCAGAAGGTAGCA
CCATTACCAGCGATTACGGATCGACCACGAATTCCTTACCTATTCACAGA
TCAGATTCTATGGAGAGTTTCATGTCGGCTGTTTCGGCCGCTACAACGAA
CAATATCGATGAGTTTGGAGATGAACTTTCTCCGAGTCGTTTGCAAGTTT
TTTTACATTATGATCCGAAATTATGGACTTTGACAGTAGGTGTCAAGCAA
GCTGATTGCTTAGTATCGACCACAGGTAGTGCCATGTATTGGCAAGCACA
TGTAACAATATTACCCTTTAAAAAACATAGATTCAAAACGAAGTATAAGT
CGACATCGACACCAATTTTTAATCAGAACTATGAAGTAGAAAACATCGCG
CAACAAGCCCTCTCACAGCTTTCCGTTCGTTATCGGATCTACGGCCGTCC
AGGGCGAGGTGGGCGTAAAAAGCTGGCGGGAGAAACAGAAGTTGAACTTT
CACATATAACCCAGATGGAGGATATGATAATAAAGGACTGGCGTGTTTTG
AGGCGTAAAGGTGGACCTTTCATCCGCCATGAAAGTGAAGTTTAGATGTT
TAttttaaattcttatttttgggAGGGCTATAGTggtatatattttattt
tctagttttatttttctcgtgttgttttttattaatgacattttttgAAG
GCTTAGTGTAAAGGGCTCTGTCCAGAGAGGAACCAGCTTCTAATTTGCAA
CGAAAAATTTTTCTATTCAGATATATTAATGATTACTCAAACTGACTCGG
TGAACtctgaagaaaaattaaaaggagCTGCATAAAGATGAATCTccctc
ttttttataaaaattactcATTTTTAATGGGTTATTCACTGTTATGTTCt
attgtattttaatttttttacattttaatttaCAACTTGGGGTATTTTAA
GTGAAAAGTACATGGCAAATATGGAGAGATCACTTTACTTAGTCAGAGCC
CGGAGAACTGGCATAATTTTATAGTAAAGACAGAGACTTAAGGGGAAGCA
CAATTTTgacgttttgatttttgaattcagACTTTATCTTTTGTTCTCTG
ATCAGAGACTAGAACAATTATATCATTCTATCAAAGTTTCCAAACCTGAA
GCTTTTACCTGTCGATGTAGAATAATTGGTAGTAGTATTCTTGTTAGATT
TTTTAGTAGCTAAATTAagggagatattttcgtgtttttctaaccaacat
tttctttttttaattcatttttataTGTCATCATCCATACTTGTAAAAAT
AAACCATTAATAGTCTACTACGATAATTACACACTACATATGCAGCAATC
gtaattcaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009600-exon-sc0000097-1491911889:531062..531274 | TCONS_00009600-exon-sc0000097-1491911889:531062..531274 | Clytia hemisphaerica | exon |
| TCONS_00009600-exon-sc0000097-1510915933:531062..531274 | TCONS_00009600-exon-sc0000097-1510915933:531062..531274 | Clytia hemisphaerica | exon |
| TCONS_00009600-exon-sc0000097-1575043694:531062..531274 | TCONS_00009600-exon-sc0000097-1575043694:531062..531274 | Clytia hemisphaerica | exon |
| TCONS_00009600-exon-sc0000097-1491911889:535571..537323 | TCONS_00009600-exon-sc0000097-1491911889:535571..537323 | Clytia hemisphaerica | exon |
| TCONS_00009600-exon-sc0000097-1510915933:535571..537323 | TCONS_00009600-exon-sc0000097-1510915933:535571..537323 | Clytia hemisphaerica | exon |
| TCONS_00009600-exon-sc0000097-1575043694:535571..537323 | TCONS_00009600-exon-sc0000097-1575043694:535571..537323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:531062..537323 + |
Blast
The following BLAST results are available for this feature:
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