TCONS_00009606 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009606
Unique Name	TCONS_00009606
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	764

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000097:572954..578364+

transcript sequence

>TCONS_00009606 ID=TCONS_00009606|Name=TCONS_00009606|organism=Clytia hemisphaerica|type=transcript|length=764bp
caaaaaaaagaaattacaaaatggTGGAAGAATCTAATATTGGATGCGTT
GTCAACGTCGACAAATGGCTGAAGGAAAATGAGGAGAGTTTCAAGCCACC
TGTTTGTAACAGCATCATGTGGCTATTTGAAGATCATGTTTGTTGGAGGA
CCGAACGTTCGAAAGGATTACCATATGGACCAAGGAGAAGAGTTATTTTA
CATGTTGAAAGGCGATATGTGTTTGAAGATCATGGAGAAGGGCGAACCTA
AAGACATCCATATTCGTGAAGGAGAAGTTTTTGTGTTACCTTCACGTATC
CCACACTCGCCGCAAAGAAACGCAAACACTCTTGGATTGGTCATCGAAAG
GGAAAGAGCGGATCAATGGGACGGGTTAAGGTATTACTGTGAAGACGGGA
AGACGatcttatttcaaaaatatttccattTGCGCTCGTTGGTTCAAGAT
TTTCTTCCTGTTATCAAAGAATATTTTGCGTCGGAGCAATACAAAACTGG
TGTCCCTATACCAGGAACAACAGACGAAGACGAAGAAAAATTCAAAGTCG
ATCGAACGTCTACCGTTAATACGCCTTTCCTTTTATCTGAGTGGGTGAAA
GAAAACCGAAAAGAGTTGGATAATCAAGGTAAAGTGTTGTTCGAACAAGG
AGAGTTCAAGGTTTATGCTAATGGTGAAGGTAACTTTTCACAACAAAACC
CTTTTGAATCATGGATCTGGTTGATGAATGGTAAATGCAAGTTGCAAATT
GATGGTCAAACTGC

Run BLAST on NCBI

transcript from alignment at sc0000097:572954..578364+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009606 ID=TCONS_00009606|Name=TCONS_00009606|organism=Clytia hemisphaerica|type=transcript|length=5411bp|location=Sequence derived from alignment at sc0000097:572954..578364+ (Clytia hemisphaerica)
caaaaaaaagaaattacaaaatggTGGAAGAATCTAATATTGGATGCGTT
GTCAACGTCGACAAATGGCTGAAGGAAAATGAGGAGAGTTTCAAGCCACC
TGTTTGTAACAGCATCATGTATGTCCAGGTTATTTAAAGTCCACTATCAT
TGTTTGGTCAAGTATTCATCTTTTTGTCATGCTTgagattttgataaata
taatcATAGAGGTCCTGGAtgtaaaaacactttttaacCCATTATTTTTC
CTTGCTACCtttaattgaaaaattggaaactGATGCAAAAATCTATTTAG
TAAATGTACTATTTTCTAAGAAAAACCGAAATCAAAACCAAACAATTTTA
CGGTCTCGAAATCTCTTTTATCGTAAAAAGCTGGAAGTTAGAAGCCTGGA
AACAACACGTTTTACTTATAAGAATGTTTTTGCTACTAGCCTTTTCAGAT
TCTGTTAGATTTGCATGGAACAAGTAGCAATTACGTCTGGTTTTTTCATA
AAGAcagttctttttgttttgaagggCAGGTGGCTATTTGAAGATCATGT
TTGTTGGAGGACCGAACGTTCGAAAGGATTACCATATGGACCAAGGAGAA
GAGGTACACAATAGATATTCTTTCGGCCATCTCAATAGTTATCTTTTTCG
AAAGAGGGAAGGAGAACTTTGCGACATCAATGATATGAACAATTTTAAGG
GGTTAAGGTTGAATTATTGTCATCTTATCATTCGAACTATTCTATTGTTA
GCCGGTTTGGCGGTGACGGGCCTACTACACTAAGATATTGAATATTACAT
AGGCAccattcttcttcatttttatgacgtcagaaatttatttcatttgt
tttttctcttttccaCTGTATTTTCGCGATAaagcattgaaaattgaaag
aaactcaAGGAAACATTGAACAAATACAATACTAACCGGTTTAGGTCGGG
CTCTAATTATTGCCCGAAATCAAATAAACTACAGAGCATTGATGACCGAA
TATTTCTTAGTTATTTTACATGTTGAAAGGCGATATGTGTTTGAAGATCA
TGGAGAAGGGCGAACCTAAAGACATCCATATTCGTGAAGGAGAAGTAAGC
TCTCTATCAGGTCTTTACTCATCATCAAGAATTTCTTTAATACATTTTAC
ATTCATAAGAGTATGCATCCCTGCAAACTCGAGTGGCTTCTGAAAAGTTA
ATTTTTACCAAACCATTTAGGTCATAACTACTTACCTACTAACCTacttt
aaattcaaaaagtgAGGAGAATGTATTGTAGGTTAAGGGAAACTTGCAAC
TTTCTAAAAGCTTAAGTTCTGTTCTGAAGAGATCACTTTATTATTTCAGG
TTTTTGTGTTACCTTCACGTATCCCACACTCGCCGCAAAGAAACGCAAAC
ACTCTTGGATTGGTATGCTGAAGCAATTATTTGGGTTGGAAAATATTGAT
GAGAGATAGCTTCATAAAATCATGTGGCCCAAATGAAGAATTTTATCACA
AAGTGAAGAATCGAATTGAAAAATAACCGAGCGTTTTTTGGGAGATAACT
ATGAGATTGGTAACCTTGGAGGatagtttaaaaattttcgattACCTCGA
GATAAAAAAGTGGTTGAACAACGTGTAATCATTACATCTCCTTGAGCACT
TTGTGAAGGACTTTAATTTCAAGGCTTAACGAAATTCAAAGGTTGAATTG
TATACCTTCTAAGTGAATACtaattgaaaatattataaTAATTCTTTACC
CCTTTCTATAGGTCATCGAAAGGGAAAGAGCGGATCAATGGGACGGGTTA
AGGTAACAAATATTCAGTTTTGCTTGTTGTACTGTAGttaacaaaatttt
gttggtttgtGAGCTGAAGTATTTGGTCGAATCATGCATTTGCTTTCTGT
ATTAAATTACACCTACTCTCGCTTGGAATCTTTTTATAATGCTGCAGTGG
TGGAAATAGCGGTCAGTTATTGGTTAAAACCGACCAGAAATAAAACAACA
CcgacacaaaaagtttcaaatttaaAGAAATAACCGATCAATATTTGAGT
GATCTATATTAATCCGATACTGTTTGGTTAATGTTGGTTCAGTTATCTTT
TGGAACAACCATTTTCTATCTAGAATTTTCATGCGTTTGTATTTGTAAGA
aactaatttaaaaattttcaaggtaTAATTCGTAGAAAGAAGGTTAGAAG
AAGTCATTTTCTCTGCTATATGCAATGATGCTTatctttccttcgttcaa
aagaTTCATAATGAAAATTAATTGATGTCATCAAAATGAGACAGTTTTAG
CAAATCATGAGCAGggataaattttctaaattttctatcTCAGCCAAAAC
CATGGTCGCCCTTCGGGTGACAATAAACACGAGCGATCTACTAAAATAAC
CGATCACAACGGGAAAGCTTATTTCGCCCACTGAATTGCAAACTTATTTC
CAGTCTCCTTTCCAgttactttctgtaattcgaatctctctgttattcga
acaagTGGAATTCCCCTTTCGagctcgaattagcgagagtcgacTATATC
TCTAAACAATTATCTTTGCGTATTGTAGGTATTACTGTGAAGACGGGAAG
ACGatcttatttcaaaaatatttccattTGCGCTCGTTGGTTCAAGATTT
TCTTCCTGTTATCAAAGAATATTTTGCGTCGGAGCAATACAAAACTGGTG
TCCCTATACCAGGTACATACCATAATGTCAAACTCTAAATGTATAGATTT
TCGTAAACatccaaatttcaaaatctcCCTTAAGGtttaaacaccaaaat
taaGTACTCtagggtacctaatagccgggggggggggttggaataagaat
gtcctggggggaaaatgtttgaaaaggaggctaatacagcagaattaaga
caaaaaagggaactttcaaaaacattttcccagaaattaataagcgggag
ggggggttggaataagaatgtcctggggggaaaatgtttgaaaaggaggc
taatacagcagaattaagacaaaaaagggaactttcaaaaacattttccc
agaaattaataagcgggagggggggttggaataagaatgtcctgggggga
aaatgtttgaaaaggaggctaatacagcagaattaagacaaaaaagggaa
ctttcaaaaacattttcccagaaattaataagcgggagggggggttggaa
taagaatgtcctggggggaaaatgtttgaaaaggaggctaatacagcaga
attaagacaaaaaagggaactttcaaaaacattttcccagaaattaataa
gcgggagggggggttggaataagaatgtcctggggggaaaatgtttgaaa
aggaggctaatacagcagaattaagacaaaaaagggaactttcaaaaaca
ttttcccagaaattaataagcgggagggggggttggaataagaatgtcct
gggtggaaaattttcgaaaaattaattagcggggggactagacggctatt
aggtacccgagagtagtttcATGTAAGTTTAGACTATGTTTTTGTATTCC
ATTATGACATGTTTACGGGAGATCTTGAGTTGATGACTGCACTCTTACTC
AATTTCATGTTATAAGAGATGAGTTGTATTGCTGGCCTAGAGTTTTTGTC
TAGGTTttaatgttcaatttttcatgataGGAACAACAGACGAAGACGAA
GAAAAATTCAAAGTCGATCGAACGTCTACCGTTAATACGCCTTTCCTTTT
ATCTGAGGTGAGAAGTGAATGTGTTTCTTATTTCTGCTATACTCCCCGTG
TCACGAAACAGGTTGACCACTGTAAAATCACTAATTCTCTGATACCCCCC
TTGTGTAATTGAGCAGTATACAATCGAATACAAAAATTCGAACCCTTTAA
AAGTAACAAGTGAGCTTTTCCGGTATTTTGCTACTTAATTTTATCCCTGT
AATTGTAAAAATTGTTCATGAGACAAAGGTGCCACTATACTAATTCTGTC
TCGAgagttttacttttttttatttattttatataatCTTCTTTAATCAA
TCGCTAGTGGGTGAAAGAAAACCGAAAAGAGTTGGATAATCAAGGTAAAG
TGTTGTTCGAACAAGGAGAGTTCAAGGTATGTGTCTTGAGCATATTAACT
CATCGAGCACCCTGTGAGGAGAAGATAAAAATCCTCTACGAATTGTTAGG
AATATACTTTGCTTTATAACCATACGGGAAATTTGCGGGCTGAAACTCAT
CATTCGCTTGCTTAGCAACATTTAATTTTCAGCCTCAATTTATGCCTTAA
CATATGATATGTTcacgaaattttttttaaaacattgtCAAATTTGACTg
attttcatcttcactttttACTTTCTTTATGATTACATCCACTCGATAAA
AAGGTGTGTGTACTTGTTGTAATAAGTATTCTTATACGCTTTTAATTGAA
GATCATTGTGCAAAATGCCTTTCAATTCAATATATTTATTGTCTACCTCC
CTGTCTCATtgattctattttcaaaacaaaatttgaattatgaaTCTTCG
AGCTATGCTATGCTAAGcattgtgtttgtttttttctgctaATTTGAGCA
TCAGTCtgctttttaaaaattatgcttataaaaaagagagtCTCTTCGTT
ATATCCCTCGTCTCCTGAAATTTAGCTTGTCTCTTAAATATGTgactttt
tatccattttttcaacttattcgCGATCAAATCAAAATCTTCCTTTGGAG
AAATTTACCACATTaacgttttttgaaattttgtaaacaaaagtttagaa
atcgaTCTTCTTACTTTTTTGTTCGCTTCAGGTTTATGCTAATGGTGAAG
GTAACTTTTCACAACAAAACCCTTTTGAATCATGGATCTGGTTGATGGTA
ATATATTTTTCCTGTTTGTTGTATTACTGTTACTATTCTTAAAACTGTGG
Ggtacttattttggcgagaacttatttcgtcgaatgttcaaactttttaa
tttcggcgagaactaattttggcgaatagcAGGCTCAATCTGtcctattt
tgccttattttgagcaactttgatgaatttttcGGGTTATTTTGACAAAG
TGaaagaaataataataattttggCGAGAGCTTACTTTGAGTGAGTaaga
taattaattttttggaaaactaattttagcgaatttTGTCTAAGGTCGCC
AAATCCCCCAGAATTGGTTCTTACCAAAATAAGTTTCCTTAATGTATGTA
GAGATTCCATGTTCAAATTAGACTTTTGTATCAACTTTGCCAGTATGTCG
AGAATATCTTAACAAGTCACATGGTCAAGATAATAACATATTACTTAACT
TTCCTCTTCTGTCCCATACACAGAATGGTAAATGCAAGTTGCAAATTGAT
GGTCAAACTGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005361	XLOC_005361	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000097	supercontig	sc0000097:572954..578364 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.4154	2.30146	0.24487	0	5.5323	0	0.563483	0.144914	10.2122	3.50373	0.000444663	4.00852	5.52506	1.13746	3.14796	3.48462	7.35729	8.75817	7.02256	0	9.45435	0.0137668	13.6635	10.0914	5.31666	2.8361	2.51633e-06	12.1667	17.3696	8.7528

Blast

[Close]

BLAST of TCONS_00009606 vs. Swiss-Prot (Human)
Match: 3HAO (3-hydroxyanthranilate 3,4-dioxygenase OS=Homo sapiens GN=HAAO PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 7.944e-57
Identity = 95/216 (43.98%), Postives = 147/216 (68.06%), Query Frame = 1

Query:  127 LKIMFVGGPNVRKDYHMDQGEELFYMLKGDMCLKIMEKGEPKDIHIREGEVFVLPSRIPHSPQRNANTLGLVIERERAD-QWDGLRYYCEDGKTILFQKYFHLRSLVQDFLPVIKEYFASEQYKTGVPIPGTTDEDEEKFKVDRTSTVNTPFLLSEWVKENRKELDNQGKV-LF-EQGEFKVYANGEGNFS--QQNPFESWIWLMNGKCKLQIDGQ 759
            LK+MF+GGPN RKDYH+++GEE+FY L+GDM L+++E+G+ +D+ IR+GE+F+LP+R+PHSPQR ANT+GLV+ER R + + DGLRYY  D   +LF+K+F+ + L     P+I+E+F+SEQY+TG PIP    + E  F +  T ++  P  L  W+  + +EL     + LF +  E +V A G+G+    +QN  + W+W + G   + + G+
Sbjct:   32 LKVMFIGGPNTRKDYHIEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLRYYVGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEQYRTGKPIPDQLLK-EPPFPLS-TRSIMEPMSLDAWLDSHHRELQAGTPLSLFGDTYETQVIAYGQGSSEGLRQN-VDVWLWQLEGSSVVTMGGR 244

The following BLAST results are available for this feature:

BLAST of TCONS_00009606 vs. Swiss-Prot (Human)

BLAST of TCONS_00009606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
3HAO	7.944e-57	43.98	3-hydroxyanthranilate 3,4-dioxygenase OS=Homo sapi...	[more]

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TCONS_00009606 (transcript) - C. hemisphaerica