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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009607 ID=TCONS_00009607|Name=TCONS_00009607|organism=Clytia hemisphaerica|type=transcript|length=1585bp
CACTACTGATTGAAGGGTCTGAGAGTGTTTGCATGATTTTTACGATGGAT
CGAAATGCAACTCCGCAAAAATAAAACGAAAATTATTTTCtacattaaaa
ttttaataaatattatatatatttaaatgatatttttagtttttagattt
tttgatatagcatatttttgaaaataacttttgataatttATCCTTTATT
AACGCAAGTTTTTAcctttattttgttgtttcgtTGAAATATACATCTTA
TGATAGACGGTGTTCTATACGAGTGGCAAAAGTTCTCCCGGCTATAAATT
CTTATtgtattattttgaaatattgatgTGAGTATTTTTCGTTGTAGATA
AAAATAAtacgaaacaaaaaaaacaagatgTCCTTCCAACACGTACCAGT
TCACCATTCTGAATCCATGGAAGAAATCCTTGAAGATCCTTTTGATGACG
AATTAGAATCCACCTTCCCGCCCCAACGTTATTGCGCCACCTACTATCCA
CGCCCTCAACAGGGCGCCACAAAGCTGAGGCGTGAAAGTTCAATCGAGAG
GTCAAGACTTTATCGCGAGCTGGTTGGTCACGAACCCTACCGCCCACCCG
CACCGCGCGCTCAAAAGAACGCGAAGAATGATTTCCGAGTCCTGTTGAGT
GTCAAGCATTACACACCAGAAGAAATCACTCTCAAAGTGGATGGACAGAA
GCTTTACGTCACAGGCAAGCATCACCAAGAACTGGAAAGTGGTTTCGATA
AAAGTGAATTCCAACGTGTTTACGTTATCCCCGAACAAATCGATATGCGT
ACTTTGACGTCCACCATTACGTTAGACGGCGTACTCATCATCAAAGCGAT
CGCAAAACAAGCAGATCAAAACATCGCGGTAAATTCGGAGGAGTTTGCTG
TATTGCCGGCAAACGAGGATGGTGATAAATTCAAAGTGACATTGGACGTT
AGTGAGTATAAGCCAAGTGAGATATCCATTCACGTTAACGAACGTTATCT
CGTGGTGACGGCCGAACGTAAAGAGGAACGCGTCGACGAACACGGCGCTA
TTGCACATCATAAACGTTATGAAAGAAAATTCTCTTTAAGTGCTGAAGTC
AATTCCGAATTTTTGTCATCGCGTTATCGGGATGGTAAGATCACGATTGA
AGCACCACGCAAAGAAGTCAACAACGAAATGAGAAAACTGGAAATCCAGG
AGGAGAAGGAATGAGATTTTGTTCCAACGTTTGCATTTCTTTTCCTTGGA
CCCATACTCAGTCACGCTCAGTCATCAAATAATCATTCAGCATATCCAAT
GACCTGAAAGTGAATATTCAAAAGTTTAACtgtttatttatatatttatg
cTTAAAATCATAGCTACATTAGCTAGTCTACACAGGGGTTAAGGCTCTAG
AGTAGGGGTTTTGCGCTGAAGACGAATAGCGTACTCTAATAGATACGATA
GCTATAATCCATGCCCAATAAAAACTATCGATAGTATTCGGTACTAAGac
agaatgatttcaaagtttgaaattgCTGTCCTACGTACGTAGTTTATTTG
TTTAAAGACTCACTCTTTCGTTAAGTACAATCAGA Run BLAST on NCBI transcript from alignment at sc0000097:578624..583775+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009607 ID=TCONS_00009607|Name=TCONS_00009607|organism=Clytia hemisphaerica|type=transcript|length=5152bp|location=Sequence derived from alignment at sc0000097:578624..583775+ (Clytia hemisphaerica)
CACTACTGATTGAAGGGTCTGAGAGTGTTTGCATGATTTTTACGATGGAT
CGAAATGCAACTCCGCAAAAATAAAACGAAAATTATTTTCtacattaaaa
ttttaataaatattatatatatttaaatgatatttttagtttttagattt
tttgatatagcatatttttgaaaataacttttgataatttATCCTTTATT
AACGCAAGTTTTTAcctttattttgttgtttcgtTGAAATATACATCTTA
TGATAGACGGTGTTCTATACGAGTGGCAAAAGTTCTCCCGGCTATAAATT
CTTATtgtattattttgaaatattgatgTGAGTATTTTTCGTTGTAGATA
AAAATAAtacgaaacaaaaaaaacaagatgTCCTTCCAACACGTACCAGT
TCACCATTCTGAATCCATGGAAGAAATCCTTGAAGATCCTTTTGATGACG
AATTAGAATCCACCTTCCCGCCCCAACGTTATTGCGCCACCTACTATCCA
CGCCCTCAACAGGGCGCCACAAAGCTGAGGCGTGAAAGTTCAATCGAGAG
GTCAAGACTTTATCGCGAGCTGGTTGGTCACGAACCCTACCGCCCACCCG
CACCGCGCGCTCAAAAGAACGCGAAGAATGATTTCCGAGTCCTGTTGAGT
GTCAAGCATTACACACCAGAAGAAATCACTCTCAAAGTGGATGGTAAGAG
CATATGGTTTCCTTTTCACTCTTCTTCTTGGacttatttttttgcttgaa
attatttttgagacTGGGTAGCCTAATTTTTAATTGTCGAGTTTACttga
cgttctctaattcgattttcaaaaggAATTGGTTTTTATCGAATACTTGA
GAGTAAATATTGGGATGTCTCCTAAAACCACCttgaaaaaccttgaaaat
aaacCCCATAAACTTGAAAATAAACCCCATAAACTTGAAAATAATCCCCA
TAAACTTGAAAATAATCCCCATAAACTtgaaagtatgaatttcacaggta
aaaacgtaaaaaccaaAAACTTAAGAAATACGCCAAACTTcattaaaaat
cttgaaaacgtttaaaatcaaaatatagaaTAAATAGTGTCATTTATcgc
acccccttctcacagccccactgggaacccttcccacttgaaaaattgtc
caaaatatcgtccccgttgggaaattatcctccaatttttgtccccactg
ataataatcaaataaaccaatcctcaatgcaaaatatcatattttttcca
tccccactgaattttctgacttataaacaaaagaatccccagccataaaa
gatattggaatatcaatcgccatcgagtttcagtctgtttattttatcct
caaaagaatcctaccggatctgtgagaaggggatgttttatccgaatttt
ttaaatatattaggCGGTAAGTtttaatttgatcaaaattatcGAGATTA
TTTTATAGTAGAAAGTCGAATTTAGGAgcctatttttccaattcaataaa
atcattaCCTTTTACTTTGACTAcaactaccgggtgcgccacaaaaaagt
ttctctctttgaaactaattttctcgaaatctaaaaattttaaaagaacc
atttctatttcattggaaagaagaaagatagacttaaattttgatggatc
aTTAATTAAATTCTATTCagtaaatcaaaatttatgttcaattgaataga
aaagttactttcgaaaagtgctgaaaaacgttaaaaatcgacctatcaaa
tcaaacagaagcatcattacatgatacatcagttttttcgtttcagtcat
taaaaatgataattaactgtctaaatgaccttttgttgtaaAAGGAAGCT
TGAATTTCAATGACATGAAGAAagtttgataggtcgatttttaacgattt
cgagcactttctgaaagtaacttttccattcaattgagcataacttttga
tctaatgaatcgaatttaataagtGACCCATcataatttaagtttatctt
tcttcttttcaatgaaatgggaatgattcttttaaaatctttagatttcg
aaaaaaattagtttcaaagagagaaacttttttatggcgcacccggtatt
tggCTACATGTTTTTaaattcaagcaaaaaaaatccgaaaacaggctcaa
aGATGctcatagcgtcagccccccctgctggttggggggggggttacacc
ctaaatgtttcccaaaaaaggagggggctggaagtacaccaaTTCTATGG
GGAGACCTATGTACTTGGTGGAGCTAAAAACTCATCACTTaacgtggggg
ctaaaataactcagcttaatagttggcttcaattactcaaattgaagctc
atgaatctgaaaatttttcgaaagtgtgcaaaatattttatcttaaacct
agaactgaacgcaatttacattgACAAACCCTTTTTTAcgggatcaattt
tttgaaagtgtatagcgtcaaaagtcctgggggctaCCAAAAAATACATg
aatctttggggggacttaaaactcaggggggacctaatttttgcctggga
cctaaacccaggctgacgctatggaTGCTTAGGTCGCGCTTAAATTTGCT
AAGATTTGAATTTTCAACTAAGTTACAGCAAACAAAACTGGGGAAAGAGG
AAGGAAAAGACACAGATTTTTCTGTCATAACTGTCGAACAAATGAATCAA
TAATCGAAAGCATTTCTTTCATCATCCTTCATTCCTCAGGGTTGGAATAC
TTGACCAGAATGGGTGtcaggtatgtgcgagccatgcCATAAagtcgaaa
gtctctcaaaggggtgcAAAAACGATAAATAAAGCAATCGATTCTCTAAA
TGAGCCCAAAAATTACGAAATATCAAAAATCGACTCCCTCAAAGTGTCAT
AAAATCgggtacatgttttttcttttataagcataacgtttataagcata
tgcaggctcagtttttggtaccaaaacaatggctctattgtttgagaaca
atagaatgctaagcataatgcgagtctgatgtaggggcagacacttgctt
ataaaaaaaaatatgtataagggtcgtaaaaacgtcgaaattcagtctct
taaagggtcgattttcgaactttggccCGTCACTTCGTAAACTTAGTACC
TCCGGGGTTTTATAGAAATCTTTGCAATGGCTTCACAAAAAAGTGAGAAC
AATTCAAATAACGCAAAATTACTACCTGGTATTACAAAGTAACttcttat
atttttccaggCTCGACGTAATGCAAATTatagcatatgcttaaatttat
cccatatctgagcctagatatgcttataagtgcaatgcatataaaaatta
taaaaaaccctactcttctgtgcttaattatatggttgattacatttagc
ttagatttgtaaaggacccgcttttttgtaatcgccctgatgtaaacaaa
aatttctattggttgaaagaaaagtatcgtacgatattttgattggttaa
caaaatatcgtacgaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtattctcgggtgattttggattaat
aacccctcgtttcattgaaaacacttcaaaatattttgaaatgttttcaa
tgaacctcggggttattaatcccaaattaccctctaaaccatgttattac
tagtactaattgtAGTGGGgtcaattttgcaatttttcgggaaaaaattA
CCCCAATAGcacccccccattttatgaaatttcctgaaaaccttcatttt
cctaggggtttttggCAAAATCACCCTAAAATCAATAATGACCTTCCCTC
TATTTTATGGATCCCCTCCAAGAGTACCACCCCCCCCCTACTTATTCCAC
TCCACCCCCTTTACAATTTAGCACAAAAGAGTAGCCTATTTTAGTTCTTG
CCACGTTAAAACATCTtaaatttttggtatttttagtcCGTTTAGGCCGG
GCTTGACATTGTTTCAAAATACCATTCAATGAAAGTAATGAAAGGTTTTT
GCTTCTACAGGACAGAAGCTTTACGTCACAGGCAAGCATCACCAAGAACT
GGAAAGTGGTTTCGATAAAAGTGAATTCCAACGTGTTTACGTTATCCCCG
AACAAATCGATATGCGTACTTTGACGTCCACCATTACGTTAGACGGCGTA
CTCATCATCAAAGCGATCGCAAAACAAGCAGATCAAAACATCGCGGTAAA
TTCGGAGGAGTTTGCTGTATTGCCGGCAAACGAGGATGGTGATAAATTCA
AAGTGACATTGGACGTTAGTGAGTATAAGCCAAGTGAGATATCCATTCAC
GTTAACGAACGTTATCTCGTGGTGACGGCCGAACGTAAAGAGGAACGCGT
CGACGAACACGGCGCTATTGCACATCATAAACGTTATGAAAGAAAATTCT
CTTTAAGTGCTGAAGTCAATTCCGAATTTTTGTCATCGCGTTATCGGGAT
GGTAAGATCACGATTGAAGCACCACGCAAAGAAGTCAACAACGAAATGAG
AAAACTGGAAATCCAGGAGGAGAAGGAATGAGATTTTGTTCCAACGTTTG
CATTTCTTTTCCTTGGACCCATACTCAGTCACGCTCAGTCATCAAATAAT
CATTCAGCATATCCAATGACCTGAAAGTGAATATTCAAAAGTTTAACtgt
ttatttatatatttatgcTTAAAATCATAGCTACATTAGCTAGTCTACAC
AGGGGTTAAGGCTCTAGAGTAGGGGTTTTGCGCTGAAGACGAATAGCGTA
CTCTAATAGATACGATAGCTATAATCCATGCCCAATAAAAACTATCGATA
GTATTCGGTACTAAGacagaatgatttcaaagtttgaaattgCTGTCCTA
CGTACGTAGTTTATTTGTTTAAAGACTCACTCTTTCGTTAAGTACAATCA
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009607-exon-sc0000097-1491911889:578624..579316 | TCONS_00009607-exon-sc0000097-1491911889:578624..579316 | Clytia hemisphaerica | exon |
| TCONS_00009607-exon-sc0000097-1510915933:578624..579316 | TCONS_00009607-exon-sc0000097-1510915933:578624..579316 | Clytia hemisphaerica | exon |
| TCONS_00009607-exon-sc0000097-1575043694:578624..579316 | TCONS_00009607-exon-sc0000097-1575043694:578624..579316 | Clytia hemisphaerica | exon |
| TCONS_00009607-exon-sc0000097-1491911889:582884..583775 | TCONS_00009607-exon-sc0000097-1491911889:582884..583775 | Clytia hemisphaerica | exon |
| TCONS_00009607-exon-sc0000097-1510915933:582884..583775 | TCONS_00009607-exon-sc0000097-1510915933:582884..583775 | Clytia hemisphaerica | exon |
| TCONS_00009607-exon-sc0000097-1575043694:582884..583775 | TCONS_00009607-exon-sc0000097-1575043694:582884..583775 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:578624..583775 + |
Blast
The following BLAST results are available for this feature:
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