TCONS_00009611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009611
Unique NameTCONS_00009611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009611 ID=TCONS_00009611|Name=TCONS_00009611|organism=Clytia hemisphaerica|type=transcript|length=845bp
AGCCAATCAGGTTGGTTGGTGGACAAAGAtaattattttcaccatttcaa
TCGTTTGTAAAACAATTCACTGATTCAGTTTCAGGACAATAGAATTTTGA
ATtaaatctctttgtttttcTGTTACAATTGTCAGCAAATCTATCAACTG
TGAAAGGTCCATATCTTTTTGAAACGGTAATAAAACTCTTATTGTCTATT
GACCAATCGTCTGTATCATTGTATTTACTATAGTGATCTGCAATTTGATT
TTCCTCTCTAGGGACCCATGTAGGTTGCATAGAAATGTTGAATTTCATAC
AGTGGTAAAAGATTTCAAGAGCTAAAGATTGTAAGTGTGGTTTGGTACTT
CCAACAGAAAGGATGTGACACGCGTTTTGATTATCAATGTTAATTTGGAT
ATTTTCGTTTGCAAGTTTTGGACCGAAACTTTTCAAGACGTAATCTACCG
CTGAAAGTTCTCTGGCTGTGGAACTGGTTGCTTTTTCGAATTTGCTGAAC
TTTCCTACACAGATGACTTTGTTTAGACGCTCAGCGATAAAACCTCCATA
GCCGAAATTGCTTGCATCTGTGAAGACCATTTTTGATGTGGTTGGATGTG
GCTTGAAAGAGAAACCGTTTTTGGAATCaatgtttttgagccaaaatttt
AATTCGTTGAGGGCACCTTGAGACAGTGAAATTGGATGATACCATGATAC
GCGTGATTCGATCAGTTGATAAATGTATCGAGTAAAAAGCCTTACGATTG
GACCGAGAGCAAGATGCATCGCTGCTAGTTGACCTGCAATTCGTGAAAGT
TGCTTGGCTgagcaaaagGATGAATATCAACGTGGTGGTATCCAG
Run BLAST on NCBI

transcript from alignment at sc0000097:644021..645277+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009611 ID=TCONS_00009611|Name=TCONS_00009611|organism=Clytia hemisphaerica|type=transcript|length=1257bp|location=Sequence derived from alignment at sc0000097:644021..645277+ (Clytia hemisphaerica)
AGCCAATCAGGTTGGTTGGTGGACAAAGAtaattattttcaccatttcaa
TCGTTTGTAAAACAATTCACTGATTCAGTTTCAGGACAATAGAATTTTGA
ATtaaatctctttgtttttcTGTTACAATTGTCAGCAAATCTATCAACTG
TGAAAGGTCCATATCTTTTTGAAACGGTAATAAAACTCTTATTGTCTATT
GACCAATCGTCTGTATCATTGTATTTACTATAGTGATCTGCAATTTGATT
TTCCTCTCTAGGGACCCATGTAGGTTGCATAGAAATGTTGAATTTCATAC
AGTGGTAAAAGATTTCAAGAGCTAAAGATTGTAAGTGTGGTTTGGTACTT
CCAACAGAAAGGATGTGACACGCGTTTTGATTATCAATGTTAATTTGGAT
ATTTTCGTTTGCAAGTTTTGGACCGAAACTTTTCAAGACGTAATCTACCG
CTGAAAGTTCTCTGGCTGTGGAACTGGTTGCTTTTTCGAATTTGCTGAAC
TTTCCTACACAGATGACTTTGTTTAGACGCTCAGCGATAAAACCTCCATA
GCCGAAATTGCTTGCATCTGTGAAGACCATTTTTGATGTGGTTGGATGTG
GCTTGAAAGAGAAACCGTTTTTGGAATCaatgtttttgagccaaaatttt
AATTCGTTGAGGGCACCTTGAGACAGTGAAATTGGATGATACCATGATAC
GCGTGATTCGATCAGTTGATAAATGTATCGAGTAAAAAGCCTTACGATTG
GACCGAGAGCAAGATGCATCGCTGCTAGTTGACCTGCAATTCGTGAAAGT
TGCTTGGCTgagcaaaaggtttgttttagAACTAGTTTAATCCTTCTCAA
AAGTTTATCGATTTTTTCTTTTGGTACGTGAAAGGTCATAGTTCTTGTAT
TTATGATAGTCCCTAGCCACTTTCCTATTTGCGTTGGAATCAATGAACTT
TTTTCGAAGTTGACAAGCCATCCCCCGTTCTTTAAGTCTTCTAAAATTCT
AAAGGCTATGGATTCAACGAACTGCAAACCTCTTCCCCCACAAATACCAT
CGtctataaaaattatacttttaaTCCCTTCTGATCTCCATTTTTTAATA
AACGGTctcaatatttttgtaaaaatgtagCATGCCGAGCTTAGTCCGAA
TGGCAAAACATTAAATATGAAATACTTAGTTTGTCCGTCAGGAAAGAGCC
AGTGAAAacctaaatattttttatgttcaGGATGAATATCAACGTGGTGG
TATCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005364XLOC_005364Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009611-exon-sc0000097-1491911889:644021..644838TCONS_00009611-exon-sc0000097-1491911889:644021..644838Clytia hemisphaericaexon
TCONS_00009611-exon-sc0000097-1510915933:644021..644838TCONS_00009611-exon-sc0000097-1510915933:644021..644838Clytia hemisphaericaexon
TCONS_00009611-exon-sc0000097-1575043694:644021..644838TCONS_00009611-exon-sc0000097-1575043694:644021..644838Clytia hemisphaericaexon
TCONS_00009611-exon-sc0000097-1491911889:645251..645277TCONS_00009611-exon-sc0000097-1491911889:645251..645277Clytia hemisphaericaexon
TCONS_00009611-exon-sc0000097-1510915933:645251..645277TCONS_00009611-exon-sc0000097-1510915933:645251..645277Clytia hemisphaericaexon
TCONS_00009611-exon-sc0000097-1575043694:645251..645277TCONS_00009611-exon-sc0000097-1575043694:645251..645277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:644021..645277 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1737	4.35037	1.98687e-08	0.94792	1.16262	0.968286	0.840952	0.679053	0.658794	0.865452	1.86542	1.31052	0.909174	1.47265	1.99819	1.76396	1.55375	3.01982	0.65369	3.38662	2.16614	2.24428	1.10423	2.45789	0	0	1.72763	1.35563	3.92422	1.97453
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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