TCONS_00009641 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009641
Unique Name	TCONS_00009641
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	968

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000097:485021..486826-

transcript sequence

>TCONS_00009641 ID=TCONS_00009641|Name=TCONS_00009641|organism=Clytia hemisphaerica|type=transcript|length=968bp
TAAGTTCAATTTCGCCGGTTGGCCCTggcAAAGAGTTGATTCCACCACCT
TGGTTGATCGCCATGCAACGTTATGGTCCTCCACCCTCTTACCCTAATCT
CAAAATCGCCGGATTGAACGCTCCCATTCCTGAGGGTTCATCATTCGGCT
ACCACGCAGGAGGTTGGGGCAAACCACCAGTTGACGAAATGGGTAAACCA
CTTTACGGTGATGTCTTCGGTACCATGAATGAAGATCCCAATGCCGGTGC
AGAGACGGAGGACACGATCGATCGAACACCCTGGGGTGAAttagaaagcg
aaagtgaaagtgaaatggAGTcggaagatgaagatgaagatgaagaccAG
ACAGGATTGATCACTCCTGGCGATGCCGGTCTTGTTACGCCGAGCGGTAT
GTCATCTGTTGGCGCCGGTCTCGAAACGCCCGATATGATTGAACTCCGAA
AACGTAAGGAAATCGAAGACGCCATGGAAACGGGCGGAGATACACCTGCG
TTGTATACTGTATTGAACGAGAAAAAGACTAATGTTGGAGCTTCTATGAT
GGGCTCACAACACACTTATGATTTAGCGCCCTCTAAGAAGGCGGGTGATG
GCGTAGAGATCACACTTGACCCGAGTGAGCTTGAACTGGAACCATCTGCA
ATGGCGGCGAAATACGATGATACGATGAAAGAACGAGAAGCGAACGTCAA
CAGGGAAGATTTCTCCGACATGGTGGCTGAACACAACGCTAAAAAGAAAC
GGAAGAAGCCAACGGACAGTGGCAAAGCTGcaaagaaatacaaagaattc
aaattttaaggcttcttgGGGAACTTTAAGGACTTTCATTGATGTATTTT
ATTTGTGgtgactttcaaaaactttttaacctctttttttgtaaagattt
attatttgataGATTTAGTAGTTTTTATTTACAAAGAAAGTTTTTACAAT
ATCTCTTCTGTTTGGCCG

Run BLAST on NCBI

transcript from alignment at sc0000097:485021..486826-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009641 ID=TCONS_00009641|Name=TCONS_00009641|organism=Clytia hemisphaerica|type=transcript|length=1806bp|location=Sequence derived from alignment at sc0000097:485021..486826- (Clytia hemisphaerica)
TAAGTTCAATTTCGCCGGTTGGCCCTGTAAGTTCAATTTCTTCTGTTTAT
TAACAGACTCGTTATTCTTACATAAAAGTGAATGTTTTAAATGCAAATCC
CTTCACCGTAGTATCAACTATACAAGAAAGACAGACGAAATACAACGGGG
ACAAGATTATAAGCTGATAAGCTGGTATCCATAACAAGCAAACTTTGATG
ACTTTCTCATTTAACATTTTATTTTCAGGGCAAAGAGTTGATTCCACCAC
CTTGGTTGATCGCCATGCAACGTTATGGTCCTCCACCCTCTTACCCTAAT
CTCAAAATCGCCGGATTGAACGCTCCCATTCCTGAGGTATTTTCCATTTC
GCTGAAGTAGCTGTTCTTTTTTATTGTTTTTCACACTTTTTAAATTTTAT
ATAGCTGACAATTTTACATTTTCCATTCGGAGCTCTTAAATTGTTACTTT
TTTCATTGGTCACATAATGTTATAGTCGTAACAGCTTTAAACGATTAATG
TTGATTCATTGTGAATAAAGATGGATCCAGAGGATTAATAGTCTTAAGAA
AAACTCATTTCTCATTGTACAGGGTTCATCATTCGGCTACCACGCAGGAG
GTTGGGGCAAACCACCAGTTGACGAAATGGGTAAACCACTTTACGGTGAT
GTCTTCGGTACCATGAATGAAGATCCCAATGCCGGTGCAGAGACGGAGGA
CACGATCGATCGAACACCCTGGGGTGAATTAGAAAGCGAAAGTGAAAGTG
AAATGGAGTCGGAAGATGAAGATGAAGATGAAGACCAGACAGGATTGATC
ACTCCTGGCGATGCGTATGATTGTTTTCTTTTGCCTCAACTTTTTTGTCT
TTTCTTTTCTTGTTTTCCCCAATCTTGTTGAATCGTTTATTCGCGTCACT
TTTGATATGAAAATCATACCAAACAATATTGTTTCTTCAGCCTTTGAGTT
ACGATTATTTTTCTCGCAATTTTAGCGGTCTTGTTACGCCGAGCGGTATG
TCATCTGTTGGCGCCGGTCTCGAAACGCCCGATATGATTGAACTCCGAAA
ACGTAAGGAAATCGAAGACGCCATGGAAACGGGCGGAGATACACCTGCGT
TGTATACTGTATTGAACGAGAAAAAGACTAATGTTGGAGCTTCTATGATG
GGCTCACAACACACTTATGATTTAGCGCCCTCTAAGAAGGCGGGTGATGG
CGTAGAGATCACACTTGACCCGAGTGAGCTTGAACTGGAACCATCTGCAA
TGGCGGCGAAATACGATGATACGATGAAAGAACGAGAAGCGAACGTCAAC
AGGGAAGATTTCTCCGACATGGTGGCTGAACACAACGCTAAAAAGGTATA
TTATATTTTAATGTTTACAGCTTGAAATTTTCCAAAACAAAATAAAGCTA
TTCTATAGGGCTATTTCAATGCGTTTCAACCAATCAAATGGTCCAACTGT
GTCATGAATAAAGATGGGCTAATTATGATTGGTTCGCATTAATGTCACAT
GCTTTTCAAAACTTTACCTGTTAGCGATAGACTTTTGTCATCCTTCCTAT
GGAATTCATTTTTTAATTATTTTTCTCTTTGTAGAAACGGAAGAAGCCAA
CGGACAGTGGCAAAGCTGCAAAGAAATACAAAGAATTCAAATTTTAAGGC
TTCTTGGGGAACTTTAAGGACTTTCATTGATGTATTTTATTTGTGGTGAC
TTTCAAAAACTTTTTAACCTCTTTTTTTGTAAAGATTTATTATTTGATAG
ATTTAGTAGTTTTTATTTACAAAGAAAGTTTTTACAATATCTCTTCTGTT
TGGCCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005379	XLOC_005379	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000097	supercontig	sc0000097:485021..486826 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.9659	19.1218	21.0632	28.0786	12.2803	9.91298	6.12197	5.72259	14.9704	12.6718	8.63903	4.83428	7.20702	13.8132	6.79839	8.29994	15.3195	15.0544	3.21955	5.7782	8.56709	8.08153	18.233	9.99154	4.76417	6.76307	6.6387	7.61648	8.59884	7.80949

Blast

[Close]

BLAST of TCONS_00009641 vs. Swiss-Prot (Human)
Match: SF3B2 (Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.081e-84
Identity = 153/251 (60.96%), Postives = 185/251 (73.71%), Query Frame = 3

Query:   15 PVGPGKELIPPPWLIAMQRYGPPPSYPNLKIAGLNAPIPEGSSFGYHAGGWGKPPVDEMGKPLYGDVFGTMNEDPNAGAETEDTIDRTPWG----XXXXXXXXXXXXXXXXXXXXQTGLITPGDAGLVTPSGMSSVGAGLETPDMIELRKRKEIEDAMETGGDTPALYTVLNEKKT-NVGASMMGSQHTYDLAP--SKKA----GDGVEITLDPSELELEPSAMAAKYDDTMKEREANVNREDFSDMVAEH 734
            PVGP    +PPPWLIAMQRYGPPPSYPNLKI GLN+PIPE  SFGYHAGGWGKPPVDE GKPLYGDVFGT   +     E E+ IDRTPWG      E  SE E E E +++  D+TG ITP D+GL+TP G SSV AG+ETP++IELRK+K IE+AM+ G +TP L+TVL EK+T  VG +MMGS H YD++   S+K       GVE+ L P ELEL+P AM  KY++ ++E++A V +EDFSDMVAEH
Sbjct:  620 PVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTE-EEEIDRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKK-IEEAMD-GSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEH 867

The following BLAST results are available for this feature:

BLAST of TCONS_00009641 vs. Swiss-Prot (Human)

BLAST of TCONS_00009641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SF3B2	1.081e-84	60.96	Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF...	[more]

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TCONS_00009641 (transcript) - C. hemisphaerica